View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0941_low_7 (Length: 631)

Name: NF0941_low_7
Description: NF0941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0941_low_7
NF0941_low_7
[»] chr4 (23 HSPs)
chr4 (246-631)||(46015608-46015993)
chr4 (246-405)||(46428196-46428355)
chr4 (249-405)||(46027879-46028034)
chr4 (451-609)||(46027579-46027737)
chr4 (449-604)||(46427946-46428095)
chr4 (190-245)||(46016023-46016078)
chr4 (187-241)||(46428384-46428438)
chr4 (255-405)||(46303817-46303969)
chr4 (255-397)||(46021197-46021341)
chr4 (246-342)||(46015351-46015446)
chr4 (246-342)||(46020583-46020678)
chr4 (528-631)||(46021043-46021144)
chr4 (567-631)||(46428521-46428584)
chr4 (271-345)||(46020784-46020861)
chr4 (190-245)||(46020921-46020976)
chr4 (79-118)||(46428507-46428546)
chr4 (506-629)||(46304004-46304125)
chr4 (576-629)||(46028205-46028258)
chr4 (246-342)||(46246255-46246350)
chr4 (263-312)||(41074446-41074495)
chr4 (85-118)||(46021029-46021062)
chr4 (186-243)||(46028078-46028135)
chr4 (255-331)||(14320569-14320645)
[»] chr1 (13 HSPs)
chr1 (284-392)||(3804121-3804229)
chr1 (260-377)||(3801740-3801859)
chr1 (562-627)||(50667483-50667548)
chr1 (561-617)||(3801975-3802031)
chr1 (246-362)||(3802212-3802327)
chr1 (190-243)||(50668628-50668681)
chr1 (268-331)||(50668040-50668103)
chr1 (246-366)||(3802651-3802767)
chr1 (528-629)||(3803692-3803793)
chr1 (571-631)||(25481831-25481889)
chr1 (571-631)||(25862146-25862204)
chr1 (568-617)||(50669602-50669651)
chr1 (564-631)||(25887882-25887947)
[»] chr8 (4 HSPs)
chr8 (246-323)||(4522939-4523015)
chr8 (574-631)||(4525565-4525622)
chr8 (571-631)||(4522770-4522830)
chr8 (255-340)||(4525320-4525403)
[»] scaffold0079 (1 HSPs)
scaffold0079 (246-325)||(7948-8026)
[»] scaffold0384 (1 HSPs)
scaffold0384 (246-323)||(5736-5812)
[»] chr3 (1 HSPs)
chr3 (249-351)||(52806365-52806467)


Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 246 - 631
Target Start/End: Complemental strand, 46015993 - 46015608
Alignment:
Q  246 attttcataaaaacaggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatggacgaagtacatgttaacccaa 345  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46015993 attttcataaaaacaggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatggacgaagtacatgttaacccaa 46015894  T
Q  346 attaatataactgcaaagaacatatcaatacaccattacagcattgagtaaaacttacttgctcnnnnnnnattattagcaataaactgtttctctcgct 445  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||       ||||||||||| |||||||||||||||||    
T  46015893 attaatataactgcaaagaacatatcaatacatcattacagcattgagtaaaacttacttgctctttttttattattagcaagaaactgtttctctcgct 46015794  T
Q  446 ctgtggcaacttcgttcttgtttcttgcacgacgaacattctccagacgaaaatttctccttgtgcgtcttaccttttgtttcttagcaacttcattttt 545  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||| ||||||||||||||||||||||||||    
T  46015793 ctgcggcaacttcgttcttgtttcttgcacgacgaacattctccagacgaaactttctccctatgcgtcttactttttgtttcttagcaacttcattttt 46015694  T
Q  546 gtttgtatttaaacaatgctccttagcaaattctgtttaatgttttgatcaaataaaaaatgaaagggtgaggttattttaatatg 631  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46015693 gtttgtatttaaacaatgctccttagcaaattctgtttaatgttttgatcaaataaaaaatgaaagggtgaggttattttaatatg 46015608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 246 - 405
Target Start/End: Complemental strand, 46428355 - 46428196
Alignment:
Q  246 attttcataaaaacaggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatggacgaagtacatgttaacccaa 345  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  46428355 attttcataaaaacaggaaagcaaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaatcataacagttggacgaagtacatgttaacccaa 46428256  T
Q  346 attaatataactgcaaagaacatatcaatacaccattacagcattgagtaaaacttactt 405  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  46428255 attaatttaactgcaaagaacatatcaatataccattacagcattgagtaaaacttactt 46428196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 249 - 405
Target Start/End: Complemental strand, 46028034 - 46027879
Alignment:
Q  249 ttcataaaaacaggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatggacgaagtacatgttaacccaaatt 348  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||| |||||    
T  46028034 ttcataaaaacaggaaagcaaaaataattgtatcttcacatagttt-aaagtcaaaatttaaatcataacagatggacgaagtacatgttaacctaaatt 46027936  T
Q  349 aatataactgcaaagaacatatcaatacaccattacagcattgagtaaaacttactt 405  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46027935 aatttaactgcaaagaacatatcaatacaccattacagcattgagtaaaacttactt 46027879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 451 - 609
Target Start/End: Complemental strand, 46027737 - 46027579
Alignment:
Q  451 gcaacttcgttcttgtttcttgcacgacgaacattctccagacgaaaatttctccttgtgcgtcttaccttttgtttcttagcaacttcatttttgtttg 550  Q
    |||||||||||||||||||||||||||||||||| | ||| |||||| |||||| |||||| |||||| ||||| ||| |||||||||||||||||||||    
T  46027737 gcaacttcgttcttgtttcttgcacgacgaacatacaccacacgaaactttctctttgtgcttcttactttttgcttcatagcaacttcatttttgtttg 46027638  T
Q  551 tatttaaacaatgctccttagcaaattctgtttaatgttttgatcaaataaaaaatgaa 609  Q
    || |||||||| |||||| |||||||||||||||||||||||||||||||||| |||||    
T  46027637 taattaaacaacgctcctcagcaaattctgtttaatgttttgatcaaataaaatatgaa 46027579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 449 - 604
Target Start/End: Complemental strand, 46428095 - 46427946
Alignment:
Q  449 tggcaacttcgttcttgtttcttgcacgacgaacattctccagacgaaaatttctccttgtgcgtcttaccttttgtttcttagcaacttcatttttgtt 548  Q
    ||||||||||||||||||||||||||||||||||||       |||||| |||||| |||||| |||||| || ||  |||||||||||||| ||||| |    
T  46428095 tggcaacttcgttcttgtttcttgcacgacgaacatc------acgaaactttctctttgtgcttcttactttctgcctcttagcaacttcacttttgct 46428002  T
Q  549 tgtatttaaacaatgctccttagcaaattctgtttaatgttttgatcaaataaaaa 604  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  46428001 tgtatttaaacaatgctctttagcaaattctgtttaatgttttgatcaaataaaaa 46427946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 190 - 245
Target Start/End: Complemental strand, 46016078 - 46016023
Alignment:
Q  190 agaatgaaatgggctgaatttcccaagcctggcaacaatggcaagataaacatatg 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46016078 agaatgaaatgggctgaatttcccaagcctggcaacaatggcaagataaacatatg 46016023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 187 - 241
Target Start/End: Complemental strand, 46428438 - 46428384
Alignment:
Q  187 aatagaatgaaatgggctgaatttcccaagcctggcaacaatggcaagataaaca 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46428438 aatagaatgaaatgggctgaatttcccaagcctggcaacaatggcaagataaaca 46428384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 255 - 405
Target Start/End: Original strand, 46303817 - 46303969
Alignment:
Q  255 aaaacaggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatggacgaagtacatgttaa-cccaaattaatat 353  Q
    |||| ||||||||| ||| |||||| | ||||||||||||||||||||| || |||||||||||||||||| ||| | |||||||| |||||  |||| |    
T  46303817 aaaataggaaagcataaagaattgtgtcttcacatagttttaaagtcaaaatctaaatcataacagatggatgaaatgcatgttaaccccaagctaattt 46303916  T
Q  354 aactgcaaagaacatatcaatacaccattacagcattg-agtaaaacttactt 405  Q
     || ||||||||||| | |||||  ||| ||| ||||| ||||||||||||||    
T  46303917 cacagcaaagaacatgttaatacgacatcacaacattgaagtaaaacttactt 46303969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 255 - 397
Target Start/End: Complemental strand, 46021341 - 46021197
Alignment:
Q  255 aaaacaggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatggacgaagtacatgttaacccaaattaatata 354  Q
    |||||||||||||| ||| |||||| | |||| ||  ||||||||||||  | |||||||||||||||||| | ||| ||||||||| ||||||||| ||    
T  46021341 aaaacaggaaagcagaaagaattgtgtcttcaaatgattttaaagtcaa--tctaaatcataacagatggatggagtgcatgttaactcaaattaattta 46021244  T
Q  355 actgcaaagaacat----atcaatacaccattacagcattgagtaaa 397  Q
    |||||||| || ||    || |||||| |||||||||||||||||||    
T  46021243 actgcaaataatatattaattaatacaacattacagcattgagtaaa 46021197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 246 - 342
Target Start/End: Complemental strand, 46015446 - 46015351
Alignment:
Q  246 attttcataaaaacaggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatggacgaagtacatgttaacc 342  Q
    |||||||||||| ||||||| ||| || |||| ||| ||||||| |||||||| |||| ||||| ||||||||||||||| ||||| ||||||||||    
T  46015446 attttcataaaa-caggaaaacaacaagaattttatcttcacatggttttaaactcaaaatgtacatcataacagatggatgaagtgcatgttaacc 46015351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 246 - 342
Target Start/End: Complemental strand, 46020678 - 46020583
Alignment:
Q  246 attttcataaaaacaggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatggacgaagtacatgttaacc 342  Q
    ||||||||||||| |||||| |||||| |||||||| ||||||| |||||||| |||  | |||||||||||||||||||  |||| ||||||||||    
T  46020678 attttcataaaaa-aggaaaacaaaaagaattgtatcttcacatggttttaaactcataaggtaaatcataacagatggattaagtgcatgttaacc 46020583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 528 - 631
Target Start/End: Complemental strand, 46021144 - 46021043
Alignment:
Q  528 cttagcaacttcatttttgtttgtatttaaacaatgctccttagcaaattctgtttaatgttttgatcaaataaaaaatgaaagggtgaggttattttaa 627  Q
    |||| ||||||||||||||||  | ||| ||| | ||| |||| |||||||||||||||||||| || |||||| |||||||  ||||||||||||||||    
T  46021144 cttaccaacttcatttttgttgttttttgaactacgcttcttaccaaattctgtttaatgtttttatgaaataagaaatgaa--ggtgaggttattttaa 46021047  T
Q  628 tatg 631  Q
    ||||    
T  46021046 tatg 46021043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 567 - 631
Target Start/End: Complemental strand, 46428584 - 46428521
Alignment:
Q  567 cttagcaaattctgtttaatgttttgatcaaataaaaaatgaaagggtgaggttattttaatatg 631  Q
    |||| |||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||    
T  46428584 cttaccaaattctgtttaatgttttgatcaattaagaaatg-aagggtgaggttattttaatatg 46428521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 271 - 345
Target Start/End: Complemental strand, 46020861 - 46020784
Alignment:
Q  271 aataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatgg---acgaagtacatgttaacccaa 345  Q
    ||||||||||| ||||||||||||||||||||| | ||||||||||||||||||   | | |||||||||||||||||    
T  46020861 aataattgtatcttcacatagttttaaagtcaaaacgtaaatcataacagatggatcaagtagtacatgttaacccaa 46020784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 190 - 245
Target Start/End: Complemental strand, 46020976 - 46020921
Alignment:
Q  190 agaatgaaatgggctgaatttcccaagcctggcaacaatggcaagataaacatatg 245  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||    
T  46020976 agaatgaaatgggctgaatttcccaagtctggcaacaacggcaagatagacatatg 46020921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 79 - 118
Target Start/End: Complemental strand, 46428546 - 46428507
Alignment:
Q  79 atgaagggtgaggttattttaatatggctgaaactgttaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  46428546 atgaagggtgaggttattttaatatggctgaaactgttaa 46428507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 506 - 629
Target Start/End: Original strand, 46304004 - 46304125
Alignment:
Q  506 ttgtgcgtcttaccttttgtttcttagcaacttcatttttgtttgtatttaaacaatgctccttagcaaattctgtttaatgttttgatcaaataaaaaa 605  Q
    ||||||| | ||| ||||| |||| ||||||||||||||||||  | ||| |   | |||||||||||||||||| || ||||||||||||| ||| |||    
T  46304004 ttgtgcgccctactttttgcttctcagcaacttcatttttgttgttttttgagtgacgctccttagcaaattctgatttatgttttgatcaattaagaaa 46304103  T
Q  606 tgaaagggtgaggttattttaata 629  Q
       ||||||||| |||||||||||    
T  46304104 --caagggtgagattattttaata 46304125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 576 - 629
Target Start/End: Complemental strand, 46028258 - 46028205
Alignment:
Q  576 ttctgtttaatgttttgatcaaataaaaaatgaaagggtgaggttattttaata 629  Q
    ||||||| |||||||||||||||||| ||| ||||||||||| |||| ||||||    
T  46028258 ttctgttaaatgttttgatcaaataagaaacgaaagggtgagattatattaata 46028205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 246 - 342
Target Start/End: Original strand, 46246255 - 46246350
Alignment:
Q  246 attttcataaaaacaggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatggacgaagtacatgttaacc 342  Q
    ||||||||||||| ||||||  ||||| |||||||| ||||||  |||||||| | |  | |||||||||||||||||||  |||| ||||||||||    
T  46246255 attttcataaaaa-aggaaaaaaaaaagaattgtatcttcacaaggttttaaacttataaggtaaatcataacagatggattaagtgcatgttaacc 46246350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 41074495 - 41074446
Alignment:
Q  263 aaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaat 312  Q
    |||||||||| |||||||| ||||||| ||||||||||||| || |||||    
T  41074495 aaagcaaaaagaattgtatcttcacatggttttaaagtcaaaatctaaat 41074446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 118
Target Start/End: Complemental strand, 46021062 - 46021029
Alignment:
Q  85 ggtgaggttattttaatatggctgaaactgttaa 118  Q
    ||||||||||||||||||||||||||| ||||||    
T  46021062 ggtgaggttattttaatatggctgaaagtgttaa 46021029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 243
Target Start/End: Complemental strand, 46028135 - 46028078
Alignment:
Q  186 taatagaatgaaatgggctgaatttcccaagcctggcaacaatggcaagataaacata 243  Q
    ||||||||||||||||||| |||||| ||||  ||||||| || |||| |||||||||    
T  46028135 taatagaatgaaatgggctaaatttcacaagtatggcaaccatagcaaaataaacata 46028078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 255 - 331
Target Start/End: Complemental strand, 14320645 - 14320569
Alignment:
Q  255 aaaacaggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatggacgaagt 331  Q
    |||||||||||||||||  |||||||| ||||||| ||| || ||| || || |||||||| ||| ||||| |||||    
T  14320645 aaaacaggaaagcaaaatgaattgtatcttcacatggttctacagttaatatctaaatcatgacaaatggatgaagt 14320569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 284 - 392
Target Start/End: Original strand, 3804121 - 3804229
Alignment:
Q  284 tcacatagttttaaagtcaagatgtaaatcataacagatggacgaagtacatgttaacccaaattaatataactgcaaagaacatatcaatacaccatta 383  Q
    |||||| ||||||||||||| || |||||||||||||||||| ||||| |||||||||||||| |||  | |  ||||||||||||| |||||| ||| |    
T  3804121 tcacatggttttaaagtcaaaatttaaatcataacagatggatgaagtgcatgttaacccaaactaacttcatagcaaagaacatattaatacaacatca 3804220  T
Q  384 cagcattga 392  Q
    || ||||||    
T  3804221 caacattga 3804229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 260 - 377
Target Start/End: Original strand, 3801740 - 3801859
Alignment:
Q  260 aggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatggacgaagtacatgtt--aacccaaattaatataact 357  Q
    ||||||||| ||| |||||| | ||||||| ||||||||||||| || |||||||||||||||||| ||| | ||||||  | |||||| |||| | |||    
T  3801740 aggaaagcataaagaattgtgtcttcacatggttttaaagtcaaaatctaaatcataacagatggatgaaatgcatgtttaaccccaaactaatttcact 3801839  T
Q  358 gcaaagaacatatcaataca 377  Q
    ||||||||| ||| ||||||    
T  3801840 gcaaagaacgtattaataca 3801859  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 562 - 627
Target Start/End: Complemental strand, 50667548 - 50667483
Alignment:
Q  562 tgctccttagcaaattctgtttaatgttttgatcaaataaaaaatgaaagggtgaggttattttaa 627  Q
    ||||||||||||| |||  |||| |||||||||||||||| |||| ||||||||||| ||||||||    
T  50667548 tgctccttagcaacttcgatttattgttttgatcaaataagaaatcaaagggtgaggatattttaa 50667483  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 561 - 617
Target Start/End: Original strand, 3801975 - 3802031
Alignment:
Q  561 atgctccttagcaaattctgtttaatgttttgatcaaataaaaaatgaaagggtgag 617  Q
    |||||| ||||||||||||| |||||||||||||||||||| |||  ||||||||||    
T  3801975 atgctctttagcaaattctgattaatgttttgatcaaataagaaacaaaagggtgag 3802031  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 246 - 362
Target Start/End: Original strand, 3802212 - 3802327
Alignment:
Q  246 attttcataaaaacaggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatggacgaagtacatgttaacccaa 345  Q
    ||||||||||||  |||||||||||| ||||||||  ||||||| ||||||||||| | || |||||||||||| ||| | ||| | ||| |||  ||||    
T  3802212 attttcataaaat-aggaaagcaaaactaattgtagcttcacatggttttaaagtcgaaatctaaatcataacatatgaaagaaatgcatattacgccaa 3802310  T
Q  346 attaatataactgcaaa 362  Q
    |||||| |||| |||||    
T  3802311 attaatttaaccgcaaa 3802327  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 190 - 243
Target Start/End: Complemental strand, 50668681 - 50668628
Alignment:
Q  190 agaatgaaatgggctgaatttcccaagcctggcaacaatggcaagataaacata 243  Q
    ||||||||||||||| ||||| ||||| ||| ||||||| ||||||||||||||    
T  50668681 agaatgaaatgggctcaattttccaagtctgacaacaatagcaagataaacata 50668628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 331
Target Start/End: Complemental strand, 50668103 - 50668040
Alignment:
Q  268 aaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatggacgaagt 331  Q
    ||||| |||||||| ||||||| ||| ||||||||| || |||||||| ||| |||||||||||    
T  50668103 aaaaaaaattgtatcttcacatggttctaaagtcaaaatttaaatcatgacatatggacgaagt 50668040  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 246 - 366
Target Start/End: Original strand, 3802651 - 3802767
Alignment:
Q  246 attttcataaaaacaggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatggacgaagtacatgttaacccaa 345  Q
    ||||||||||||  |||||| |||||  |||||||| |||||||  |||||||||||| || |||   |||||| ||||| ||||| |||| || |||||    
T  3802651 attttcataaaat-aggaaaacaaaacgaattgtatcttcacatgattttaaagtcaaaatctaa---ataacaaatggaagaagtgcatgctagcccaa 3802746  T
Q  346 attaatataactgcaaagaac 366  Q
    ||||||| |  ||||||||||    
T  3802747 attaatacatgtgcaaagaac 3802767  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 528 - 629
Target Start/End: Original strand, 3803692 - 3803793
Alignment:
Q  528 cttagcaacttcatttttgtttgtatttaaacaatgctccttagcaaattctgtttaatgttttgatcaaataaaaaatgaaagggtgaggttattttaa 627  Q
    |||||||||||||||||||||  | ||| | | |  || | |||||||||||||||||||||||||  |||||| |||   ||||||||| ||| |||||    
T  3803692 cttagcaacttcatttttgttgttttttgagcgacacttcatagcaaattctgtttaatgttttgaagaaataagaaacagaagggtgagattaatttaa 3803791  T
Q  628 ta 629  Q
    ||    
T  3803792 ta 3803793  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 571 - 631
Target Start/End: Original strand, 25481831 - 25481889
Alignment:
Q  571 gcaaattctgtttaatgttttgatcaaataaaaaatgaaagggtgaggttattttaatatg 631  Q
    |||||||||||||| |||||||||||||||| |||   || ||||||| ||||||||||||    
T  25481831 gcaaattctgtttattgttttgatcaaataacaaa--caaaggtgaggatattttaatatg 25481889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 571 - 631
Target Start/End: Complemental strand, 25862204 - 25862146
Alignment:
Q  571 gcaaattctgtttaatgttttgatcaaataaaaaatgaaagggtgaggttattttaatatg 631  Q
    |||||||||||||| |||||||||||||||| |||   || ||||||| ||||||||||||    
T  25862204 gcaaattctgtttattgttttgatcaaataacaaa--caaaggtgaggatattttaatatg 25862146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 568 - 617
Target Start/End: Complemental strand, 50669651 - 50669602
Alignment:
Q  568 ttagcaaattctgtttaatgttttgatcaaataaaaaatgaaagggtgag 617  Q
    ||||||| ||||||||| |||||||||||||||| |||  ||||||||||    
T  50669651 ttagcaacttctgtttattgttttgatcaaataagaaaccaaagggtgag 50669602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 564 - 631
Target Start/End: Complemental strand, 25887947 - 25887882
Alignment:
Q  564 ctccttagcaaattctgtttaatgttttgatcaaataaaaaatgaaagggtgaggttattttaatatg 631  Q
    |||||| |||| ||||||||| |||||||||||||||| |||   || ||||||| ||||||||||||    
T  25887947 ctccttggcaagttctgtttattgttttgatcaaataacaaa--caaaggtgaggatattttaatatg 25887882  T

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Target: chr8 (Bit Score: 46; Significance: 6e-17; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 246 - 323
Target Start/End: Original strand, 4522939 - 4523015
Alignment:
Q  246 attttcataaaaacaggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatg 323  Q
    |||||||||||| |||||||||||||| |||||| | ||||||| ||||||||||||| || ||||||||||||||||    
T  4522939 attttcataaaa-caggaaagcaaaaagaattgtgtcttcacatggttttaaagtcaaaatctaaatcataacagatg 4523015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 574 - 631
Target Start/End: Original strand, 4525565 - 4525622
Alignment:
Q  574 aattctgtttaatgttttgatcaaataaaaaatgaaagggtgaggttattttaatatg 631  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||    
T  4525565 aattctgtttaatgtttttatcaaataagaaatgaaagggtgaggttgttttaatatg 4525622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 571 - 631
Target Start/End: Original strand, 4522770 - 4522830
Alignment:
Q  571 gcaaattctgtttaatgttttgatcaaataaaaaatgaaagggtgaggttattttaatatg 631  Q
    |||||||||||||||| |||||||||||||| |||  |||||||||| | |||||||||||    
T  4522770 gcaaattctgtttaatattttgatcaaataagaaacaaaagggtgagatcattttaatatg 4522830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 255 - 340
Target Start/End: Original strand, 4525320 - 4525403
Alignment:
Q  255 aaaacaggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatggacgaagtacatgttaa 340  Q
    |||||| ||||||||||| |||||| |  |||||| ||||||||||||| |  || ||||||||||||||| ||||| ||| ||||    
T  4525320 aaaacaagaaagcaaaaagaattgtct--tcacatggttttaaagtcaaaacctagatcataacagatggatgaagtgcattttaa 4525403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 246 - 325
Target Start/End: Original strand, 7948 - 8026
Alignment:
Q  246 attttcataaaaacaggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatgga 325  Q
    |||||||||||| || |||| |||||| |||||||| | |||| |||| ||||||||| ||||||||||||| |||||||    
T  7948 attttcataaaa-caagaaaacaaaaagaattgtatctacacaaagttctaaagtcaacatgtaaatcataagagatgga 8026  T

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Target: scaffold0384 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 246 - 323
Target Start/End: Original strand, 5736 - 5812
Alignment:
Q  246 attttcataaaaacaggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatg 323  Q
    |||||||||||| || |||| |||||| |||||||| | |||| |||| ||||||||| ||||||||||||| |||||    
T  5736 attttcataaaa-caagaaaacaaaaagaattgtatctacacaaagttctaaagtcaacatgtaaatcataagagatg 5812  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 249 - 351
Target Start/End: Original strand, 52806365 - 52806467
Alignment:
Q  249 ttcataaaaacaggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatggacgaagtacatgttaacccaaatt 348  Q
    |||||||||||| ||||| ||||| ||||| || ||||||| ||| ||||||||| || |||||| | | ||||||| | | | || |||||||||| ||    
T  52806365 ttcataaaaacaagaaagaaaaaagaattgcatcttcacattgttctaaagtcaaaatctaaatcgtgaaagatggaaggaatgcaagttaacccaagtt 52806464  T
Q  349 aat 351  Q
    |||    
T  52806465 aat 52806467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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