View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0941_low_70 (Length: 285)
Name: NF0941_low_70
Description: NF0941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0941_low_70 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 7e-95; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 4 - 195
Target Start/End: Original strand, 14746011 - 14746202
Alignment:
| Q |
4 |
actatcttaaactcgacattaacatatgatgacaggcaaacttgttacattagagaaagtgagaaactaacaaatagagaacaaagtacaagaaagaaga |
103 |
Q |
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| T |
14746011 |
actatcttaaactcgaccttaacatatgatgacaggcaaacttgttacattagagaaagtgagaaactaacaaatagagaacaaagtacaagaaagaaga |
14746110 |
T |
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| Q |
104 |
acaccttaagttttggagttcttgaatatttagatttagagaaagaaaagcacctctctgaaaggttatgtggctccagctgaatatatatt |
195 |
Q |
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| T |
14746111 |
acaccttaagttttggaattcttgaatatttagatttagagaaacaaaagcacctctctaaaaggttatgtggctccagctgaatatatatt |
14746202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 75 - 211
Target Start/End: Original strand, 14743051 - 14743179
Alignment:
| Q |
75 |
aaatagagaacaaagtacaagaaagaagaa-caccttaagttttggagttcttgaatatttagatttagagaaagaaaagcacctctctgaaaggttatg |
173 |
Q |
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| T |
14743051 |
aaatagagaacaaagtacaagaaataagaaacaccttaagttttggagattttgaatatttagatttagagaaacaaaagcacctctc---------atg |
14743141 |
T |
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| Q |
174 |
tggctccagctgaatatatatttattaagtaacatcat |
211 |
Q |
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| T |
14743142 |
tcgctcctgctgaataaatatttattaattaacatcat |
14743179 |
T |
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