View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0941_low_72 (Length: 283)
Name: NF0941_low_72
Description: NF0941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0941_low_72 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 14 - 283
Target Start/End: Original strand, 3873981 - 3874250
Alignment:
| Q |
14 |
agatgctttacacttcaaaacaagaaagagaagaataagaatgaaaacaataccaccagaagaaccaccaactctatgaatccaattacgatcaaacctt |
113 |
Q |
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| T |
3873981 |
agatgctttacacttcaaaacaagaaagagaagaataagaatgaaaacaataccaccagaagaaccaccaactctatgaatccaattacgatcaaacctt |
3874080 |
T |
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| Q |
114 |
gtgaagctcttatccnnnnnnnctgataaagatatgactaaaaccaatacaaaaagcaacattggtaaccataaagtaacactaattggttgttcatcat |
213 |
Q |
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| T |
3874081 |
gtgaagctcttatccaaaaaagctgataaagatatgactaaaaccaatacaaaaagtaacattggtaaccataaagtaacactaattggttgttcatcat |
3874180 |
T |
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| Q |
214 |
cttccaattcactctctgatctgtgatctatgtatagaggagaagccacagctagaactactaagcttat |
283 |
Q |
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| T |
3874181 |
cttccaactcactctctgatctgtgatctatgtatagaggagaagccacagctagaactactaagcttat |
3874250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 11 - 283
Target Start/End: Original strand, 3884507 - 3884778
Alignment:
| Q |
11 |
cagagatgctttacacttcaaaacaagaaagagaagaataagaatgaaaacaataccaccagaagaaccaccaactctatgaatccaattacgatcaaac |
110 |
Q |
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| T |
3884507 |
cagagatgctttacacttcaaaacaagaaagagaagaataagaatgaaaacaataccaccagaagaac-accaactctatgaatccaattacgatcaaac |
3884605 |
T |
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| Q |
111 |
cttgtgaagctcttatccnnnnnnnctgataaagatatgactaaaaccaatacaaaaagcaacattggtaaccataaagtaacactaattggttgttcat |
210 |
Q |
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| T |
3884606 |
cttgtgaagctcttatctaaaaaagctgataaagatatgactaaaaccaatacaaaaagcaacattggtaaccataaagtaacactaataggttgttcat |
3884705 |
T |
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| Q |
211 |
catcttccaattcactctctgatctgtgatctatgtatagaggagaagccacagctagaactactaagcttat |
283 |
Q |
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| T |
3884706 |
catcttccaattcactctctgatctgtgatctatgtatagaggagaagccacagctagaactaccaagcttat |
3884778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 110
Target Start/End: Original strand, 48453465 - 48453561
Alignment:
| Q |
14 |
agatgctttacacttcaaaacaagaaagagaagaataagaatgaaaacaataccaccagaagaaccaccaactctatgaatccaattacgatcaaac |
110 |
Q |
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| T |
48453465 |
agatgatttccacttcaaaataagaaaaagaacagtaataatcacaaaaataccgcctgaggagccacaaactctatgaatccagtaacgatcaaac |
48453561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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