View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0941_low_73 (Length: 279)
Name: NF0941_low_73
Description: NF0941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0941_low_73 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 35 - 279
Target Start/End: Complemental strand, 3874465 - 3874222
Alignment:
| Q |
35 |
tagtgagaatccgatgctctttagttagtgcatactttgaaaagcaatattccacttaccatatcaatatttttgtgttgcaattccatcatatcatatc |
134 |
Q |
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| T |
3874465 |
tagtgagaatccgatgctctttagttagtgcatactttgaaaagcaatattccacttaccatatcaacatttttgtgttgcaattccatcatatcatatc |
3874366 |
T |
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| Q |
135 |
atatatacatacattttaattaacaacacaattttcatctaaatcaatcttctgaaatggaacctgaagctagtaggaggggtcacaaattctcatctta |
234 |
Q |
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| T |
3874365 |
atatatacatacattttaattaacaacacaattttcatctaaatcaatcttctg-aatggaacctgaagctagtaggaggggtcacaaattttcatctta |
3874267 |
T |
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| Q |
235 |
tgagagagtagcagccataaacttagtagttctagctgtggcttc |
279 |
Q |
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| T |
3874266 |
tgagagagtagcagccataagcttagtagttctagctgtggcttc |
3874222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 38 - 165
Target Start/End: Complemental strand, 3885009 - 3884886
Alignment:
| Q |
38 |
tgagaatccgatgctctttagttagtgcatactttgaaaa-gcaatattccacttaccatatcaatatttttgtgttgcaattccatcatatcatatcat |
136 |
Q |
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| T |
3885009 |
tgagaatccgatgctctttagt----gcttactttgaaaaagcaatattccacttaccatatcaatatttttgtgttgcaatttcatcatatcatat-aa |
3884915 |
T |
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| Q |
137 |
atatacatacattttaattaacaacacaa |
165 |
Q |
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| T |
3884914 |
acatatatacattttaattagcaacacaa |
3884886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 169 - 279
Target Start/End: Complemental strand, 3884859 - 3884750
Alignment:
| Q |
169 |
tcatctaaatcaatcttctgaaatggaacctgaagctagtaggaggggtcacaaattctcatcttatgagagagtagcagccataaacttagtagttcta |
268 |
Q |
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| T |
3884859 |
tcatctaaatcaatcttttgaa-tggaacttgaagctaataggaggggaagcaaattttcttcatttgagagagtagcagccataagcttggtagttcta |
3884761 |
T |
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| Q |
269 |
gctgtggcttc |
279 |
Q |
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| T |
3884760 |
gctgtggcttc |
3884750 |
T |
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