View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0941_low_83 (Length: 264)

Name: NF0941_low_83
Description: NF0941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0941_low_83
NF0941_low_83
[»] chr1 (1 HSPs)
chr1 (29-264)||(1492688-1492923)


Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 29 - 264
Target Start/End: Original strand, 1492688 - 1492923
Alignment:
29 accataaagtaatatacaaaatggctatcatatgataagataagaattgaagtggcaattgaagtttgtgtatacagctactatctcactataccaagtt 128  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
1492688 accataaagtaatatacaaagtggctatcatatgataagataagaattgaagtggccattgaagtttgtgtatacagctactatctcactataccaagtt 1492787  T
129 atatatagaaaaaggaccttacactatgtgtgggaccatactaggtttctatgtataacataaatttaatatgcacttttaataaagaagtagtatcacc 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
1492788 atatatagaaaaaggaccttacactatgtgtgggaccatactaggtttctatgtataacataaatttaatatgcacttttaataaagaagtagtatcacc 1492887  T
229 acacttcaagagcttccacttcaacctcatcacaca 264  Q
    ||||||||||||||||||||||||||||||||||||    
1492888 acacttcaagagcttccacttcaacctcatcacaca 1492923  T

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