View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0941_low_84 (Length: 262)

Name: NF0941_low_84
Description: NF0941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0941_low_84
NF0941_low_84
[»] chr5 (2 HSPs)
chr5 (5-98)||(41741332-41741425)
chr5 (19-96)||(2431022-2431098)
[»] chr1 (2 HSPs)
chr1 (7-112)||(292461-292566)
chr1 (210-262)||(35817209-35817261)
[»] chr2 (3 HSPs)
chr2 (2-112)||(23357516-23357626)
chr2 (19-96)||(25665462-25665539)
chr2 (51-98)||(9989295-9989342)
[»] chr4 (1 HSPs)
chr4 (2-98)||(28988009-28988105)
[»] chr3 (2 HSPs)
chr3 (19-96)||(8426517-8426594)
chr3 (52-98)||(35424640-35424686)
[»] chr8 (2 HSPs)
chr8 (2-106)||(29022507-29022611)
chr8 (51-98)||(36646821-36646868)
[»] chr7 (1 HSPs)
chr7 (51-98)||(37562007-37562054)
[»] chr6 (1 HSPs)
chr6 (51-97)||(16442973-16443019)


Alignment Details
Target: chr5 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 5 - 98
Target Start/End: Original strand, 41741332 - 41741425
Alignment:
Q  5 gttttctctaacggagaagttaggaattcctgctttagttgtacctgcgttttggtctcaaaactgagttttttggaagcgcttttcattcacc 98  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41741332 gttttctctaacgtagaagctaggaattcctgctttagttgtacctgcgttttggtctcaaaactgagttttttggaagcgcttttcattcacc 41741425  T

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Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 2431022 - 2431098
Alignment:
Q  19 agaagttaggaattcctgctttagttgtacctgcgttttggtctcaaaactgagttttttggaagcgcttttcattca 96  Q
    ||||| |||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  2431022 agaagctaggaattcctgctttagctgtaccggcgttttggtctcaaaactgag-tttttggaagcgcttttcattca 2431098  T

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Target: chr1 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 7 - 112
Target Start/End: Original strand, 292461 - 292566
Alignment:
Q  7 tttctctaacggagaagttaggaattcctgctttagttgtacctgcgttttggtctcaaaactgagttttttggaagcgcttttcattcaccgaaataaa 106  Q
    ||||||||| | ||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||    
T  292461 tttctctaatgtagaagctaggaattcctgctttagctatacctgcgttttggtctcaaaactgagttttttggaagcgcttttcattcacccaaacaaa 292560  T
Q  107 ataaat 112  Q
    | ||||    
T  292561 aaaaat 292566  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 262
Target Start/End: Original strand, 35817209 - 35817261
Alignment:
Q  210 tgtgtaatatcttaaacaaattcatcagatatatttgataaaaacaccactaa 262  Q
    ||||| |||||||||||||||| || ||| ||||||| ||||| |||||||||    
T  35817209 tgtgtcatatcttaaacaaattaataagaaatatttggtaaaagcaccactaa 35817261  T

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Target: chr2 (Bit Score: 67; Significance: 7e-30; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 2 - 112
Target Start/End: Complemental strand, 23357626 - 23357516
Alignment:
Q  2 tgcgttttctctaacggagaagttaggaattcctgctttagttgtacctgcgttttggtctcaaaactgagttttttggaagcgcttttcattcaccgaa 101  Q
    |||||||||||||||| ||||  |||||||||||| ||||| ||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||| ||    
T  23357626 tgcgttttctctaacgtagaaactaggaattcctgatttagctgtacatgcgttttgatctcaaaactgagttttttggaagcacttttcattcacccaa 23357527  T
Q  102 ataaaataaat 112  Q
    | |||| ||||    
T  23357526 acaaaaaaaat 23357516  T

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Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 25665539 - 25665462
Alignment:
Q  19 agaagttaggaattcctgctttagttgtacctgcgttttggtctcaaaactgagttttttggaagcgcttttcattca 96  Q
    ||||| |||||||||||||||||| ||||||  |||||||||||||||||||||||||||| ||||||||||||||||    
T  25665539 agaagctaggaattcctgctttagctgtaccgacgttttggtctcaaaactgagttttttgaaagcgcttttcattca 25665462  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 98
Target Start/End: Original strand, 9989295 - 9989342
Alignment:
Q  51 gcgttttggtctcaaaactgagttttttggaagcgcttttcattcacc 98  Q
    |||||||||||||||||||||||||  ||||  |||||||||||||||    
T  9989295 gcgttttggtctcaaaactgagtttcctggactcgcttttcattcacc 9989342  T

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Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 98
Target Start/End: Original strand, 28988009 - 28988105
Alignment:
Q  2 tgcgttttctctaacggagaagttaggaattcctgctttagttgtacctgcgttttggtctcaaaactgagttttttggaagcgcttttcattcacc 98  Q
    ||||||||||||| || ||||| |||||||||||||||||  |||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||    
T  28988009 tgcgttttctctaccgcagaagctaggaattcctgctttaactgtacctgcgtttttgtctcaaaattgagttttttggaagtgcttttcattcacc 28988105  T

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Target: chr3 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 8426517 - 8426594
Alignment:
Q  19 agaagttaggaattcctgctttagttgtacctgcgttttggtctcaaaactgagttttttggaagcgcttttcattca 96  Q
    ||||| |||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  8426517 agaagctaggaattcctgctttagctgtaccggcgttttgatctcaaaactgagttttttggaagcgcttttcattca 8426594  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 52 - 98
Target Start/End: Complemental strand, 35424686 - 35424640
Alignment:
Q  52 cgttttggtctcaaaactgagttttttggaagcgcttttcattcacc 98  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||    
T  35424686 cgttttggtctcaaaactgagttttttgaaagtgcttttcattcacc 35424640  T

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Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 2 - 106
Target Start/End: Complemental strand, 29022611 - 29022507
Alignment:
Q  2 tgcgttttctctaacggagaagttaggaattcctgctttagttgtacctgcgttttggtctcaaaactg-agttttttggaagcgcttttcattcaccga 100  Q
    |||||||||||||||  ||||| ||| |||||||||||||| |||| |||||||||||||||||||||| | ||||||| |||||| ||||||||||| |    
T  29022611 tgcgttttctctaacatagaagctagaaattcctgctttagctgta-ctgcgttttggtctcaaaactgaatttttttgaaagcgcatttcattcaccta 29022513  T
Q  101 aataaa 106  Q
    ||||||    
T  29022512 aataaa 29022507  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 51 - 98
Target Start/End: Complemental strand, 36646868 - 36646821
Alignment:
Q  51 gcgttttggtctcaaaactgagttttttggaagcgcttttcattcacc 98  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||||    
T  36646868 gcgttttggtctcaaaactgagttttctggacgcgcttttcattcacc 36646821  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 98
Target Start/End: Complemental strand, 37562054 - 37562007
Alignment:
Q  51 gcgttttggtctcaaaactgagttttttggaagcgcttttcattcacc 98  Q
    |||||||||||||||||||||||||  |||| || |||||||||||||    
T  37562054 gcgttttggtctcaaaactgagtttcctggacgctcttttcattcacc 37562007  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 97
Target Start/End: Original strand, 16442973 - 16443019
Alignment:
Q  51 gcgttttggtctcaaaactgagttttttggaagcgcttttcattcac 97  Q
    ||||||||||||||||||||||||   |||| |||||||||||||||    
T  16442973 gcgttttggtctcaaaactgagttccctggacgcgcttttcattcac 16443019  T

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