View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0941_low_85 (Length: 261)

Name: NF0941_low_85
Description: NF0941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0941_low_85
NF0941_low_85
[»] chr3 (8 HSPs)
chr3 (59-162)||(6270000-6270103)
chr3 (59-122)||(6178909-6178972)
chr3 (12-47)||(6267085-6267120)
chr3 (214-257)||(8563473-8563516)
chr3 (214-257)||(31952127-31952170)
chr3 (82-122)||(6260560-6260600)
chr3 (214-257)||(31663560-31663603)
chr3 (214-257)||(31932793-31932836)
[»] chr7 (1 HSPs)
chr7 (181-257)||(41598507-41598581)
[»] scaffold0252 (1 HSPs)
scaffold0252 (214-261)||(5375-5422)
[»] chr2 (1 HSPs)
chr2 (214-257)||(25102096-25102139)


Alignment Details
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 59 - 162
Target Start/End: Original strand, 6270000 - 6270103
Alignment:
Q  59 aacatgactcaacaacaagaagggtgttacgaagcttcttgcatataggtggacccatctggtatatactagctggtttcatccggtatggagagagggt 158  Q
    |||||||| ||| |||||||||| ||||||||| || |||||||| |||||||||||| ||||||  ||||||| ||||||||| || ||| ||| ||||    
T  6270000 aacatgacccaagaacaagaaggttgttacgaaactacttgcatagaggtggacccatgtggtatcaactagctagtttcatccagtctggggagtgggt 6270099  T
Q  159 gatg 162  Q
    ||||    
T  6270100 gatg 6270103  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 59 - 122
Target Start/End: Original strand, 6178909 - 6178972
Alignment:
Q  59 aacatgactcaacaacaagaagggtgttacgaagcttcttgcatataggtggacccatctggta 122  Q
    |||||||||||| |||| ||||||||||| |||| | |||||||||||||||||||||||||||    
T  6178909 aacatgactcaagaacaggaagggtgttatgaagttacttgcatataggtggacccatctggta 6178972  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 47
Target Start/End: Original strand, 6267085 - 6267120
Alignment:
Q  12 aaaggatcgatgaagaagtgcaaaaacaaattacaa 47  Q
    ||||||||||||||||||||||||||||||||||||    
T  6267085 aaaggatcgatgaagaagtgcaaaaacaaattacaa 6267120  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 214 - 257
Target Start/End: Complemental strand, 8563516 - 8563473
Alignment:
Q  214 cctttatgaataagtgcaatgttagtaatatttatatcaggtgg 257  Q
    |||||| ||||||||||||||||||||||||||| |||||||||    
T  8563516 cctttaggaataagtgcaatgttagtaatatttaaatcaggtgg 8563473  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 214 - 257
Target Start/End: Complemental strand, 31952170 - 31952127
Alignment:
Q  214 cctttatgaataagtgcaatgttagtaatatttatatcaggtgg 257  Q
    |||||| ||||||||||||||||||||||||||| |||||||||    
T  31952170 cctttaggaataagtgcaatgttagtaatatttaaatcaggtgg 31952127  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 122
Target Start/End: Original strand, 6260560 - 6260600
Alignment:
Q  82 gtgttacgaagcttcttgcatataggtggacccatctggta 122  Q
    ||||||||||||| |||||||||||||||| ||||||||||    
T  6260560 gtgttacgaagctacttgcatataggtggagccatctggta 6260600  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 257
Target Start/End: Original strand, 31663560 - 31663603
Alignment:
Q  214 cctttatgaataagtgcaatgttagtaatatttatatcaggtgg 257  Q
    |||||| |||||||||||||||||||||||||||  ||||||||    
T  31663560 cctttaggaataagtgcaatgttagtaatatttaactcaggtgg 31663603  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 257
Target Start/End: Complemental strand, 31932836 - 31932793
Alignment:
Q  214 cctttatgaataagtgcaatgttagtaatatttatatcaggtgg 257  Q
    |||||| |||||||||||||||||||||||||||  ||||||||    
T  31932836 cctttaggaataagtgcaatgttagtaatatttaactcaggtgg 31932793  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 257
Target Start/End: Complemental strand, 41598581 - 41598507
Alignment:
Q  181 ccgccaatctttcatactaacctgcnnnnnnnncctttatgaataagtgcaatgttagtaatatttatatcaggtgg 257  Q
    |||||||||||||||||||||||||        |||||| ||||||||||||||||||||||||||| |||||||||    
T  41598581 ccgccaatctttcatactaacctgcgtggaa--cctttaggaataagtgcaatgttagtaatatttaaatcaggtgg 41598507  T

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Target: scaffold0252 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 214 - 261
Target Start/End: Complemental strand, 5422 - 5375
Alignment:
Q  214 cctttatgaataagtgcaatgttagtaatatttatatcaggtgggaac 261  Q
    |||||| ||||||||||||||||| ||||||||| |||||||||||||    
T  5422 cctttaggaataagtgcaatgttaataatatttaaatcaggtgggaac 5375  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 214 - 257
Target Start/End: Complemental strand, 25102139 - 25102096
Alignment:
Q  214 cctttatgaataagtgcaatgttagtaatatttatatcaggtgg 257  Q
    |||||| ||||||||||||||||||||||||||| |||||||||    
T  25102139 cctttaggaataagtgcaatgttagtaatatttaaatcaggtgg 25102096  T

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