View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0941_low_86 (Length: 257)
Name: NF0941_low_86
Description: NF0941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0941_low_86 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 16814409 - 16814226
Alignment:
| Q |
1 |
gttgtaacaacggtttgccatttcggaacgggaaacaaatggtcatcagaaaagagatcaaaccgttgttaaagaacaacaatcaaacaagatgtctctg |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| || ||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
16814409 |
gttgtaacaacggtttgccatttcagaacggggaaaaaatgctcatcagaaaagagatcaa-ccgttgttcaagaacaacaatcaaacaagatgtatctg |
16814311 |
T |
|
| Q |
101 |
ctgacgacggcgcagagttgcaagaacctgacccatactagtttgaccaaccaaacaaaagaccaaagtacatgttctgacaaag |
185 |
Q |
| |
|
|||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16814310 |
ctgacgacggtgcacagttgtaagaacctgacccatactagtttgaccaaccaaacaaaagaccaaagtacatgttctgacaaag |
16814226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University