View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0941_low_88 (Length: 255)
Name: NF0941_low_88
Description: NF0941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0941_low_88 |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 30 - 223
Target Start/End: Original strand, 41520012 - 41520205
Alignment:
| Q |
30 |
gctgcaagtgttgaatctggtctgagtccaacatctttactcaccaaaacaccttcaactctgtcaaaaacttctgtgagataagctccacgcaacactt |
129 |
Q |
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| T |
41520012 |
gctgcaagtgctgaatctggtctgagtccaacatctttactcaccaaaacaccttcaactctgtcaaaaacttctgtgagataagctccacgcaacactt |
41520111 |
T |
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| Q |
130 |
caataagatcagggatagtcttatcttgtaagttatcattttccacaccttcaacaagaatcacatggttggttgaagatgatgacacaggttc |
223 |
Q |
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| T |
41520112 |
caataagatcagggatagtcttatcttgtaagttatcatcttccacaccttcaacaagaatgtcgtggttggttgaagatgatgacccaggttc |
41520205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 50 - 223
Target Start/End: Original strand, 41509808 - 41509981
Alignment:
| Q |
50 |
tctgagtccaacatctttactcaccaaaacaccttcaactctgtcaaaaacttctgtgagataagctccacgcaacacttcaataagatcagggatagtc |
149 |
Q |
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| T |
41509808 |
tctgagtccaacatctctactcaccaaaacaccttcaactctgtcaaaaacttctgtgagataagctccacgcaacacttcaataagatcagggatagtc |
41509907 |
T |
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| Q |
150 |
ttatcttgtaagttatcattttccacaccttcaacaagaatcacatggttggttgaagatgatgacacaggttc |
223 |
Q |
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| T |
41509908 |
ttatcttgtaagttatcattttccacaccttcaacaagaatcacatggttggttgaagatgatgacccaggttc |
41509981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 132
Target Start/End: Complemental strand, 39254231 - 39254135
Alignment:
| Q |
38 |
tgttgaatctggt--ctgagtccaacatctttactcaccaaaacaccttcaactctgtcaaaaacttctgtgagataagctccacgcaacacttcaa |
132 |
Q |
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||||||||||||| |||||| |||||||| ||||||||||||||||| |||| |||||||| |||| | |||||||| |||||| ||||||| |
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| T |
39254231 |
tgttgaatctggtttctgagttcaacatctctactcaccaaaacacctccaacattgtcaaaatcttcagacttataagctctacgcaatacttcaa |
39254135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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