View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0941_low_94 (Length: 250)
Name: NF0941_low_94
Description: NF0941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0941_low_94 |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 21433734 - 21433493
Alignment:
| Q |
1 |
aattaggatagacctttctgtccccaacacaagattcagatccttctccttcatttcagtcccatcatctcgagaaatcaccttatctttgaagaatttc |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21433734 |
aattaggatagaactttctgtccccaacacaagattcagatccttctccttcatttcagtcccatcatctcgagaaatcaccttatctttgaagaatttc |
21433635 |
T |
|
| Q |
101 |
ccttgaggatcaagcagcctggccatctctaatgagtaccgccgatcacccatggtgtagatgtacatttcaaacattttacttgcttctttaagaaatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21433634 |
ccttgaggatcaagcagcctggccatctctaatgagtaccgccgatcacccatggtgtagatgtacatttcaaacattttacttgcttctttaagaaatg |
21433535 |
T |
|
| Q |
201 |
tgcggacaaagggcctcaacttggccattctttgcctatgct |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21433534 |
tgcggacaaagggcctcaacttggccattctttgcctatgct |
21433493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 26989735 - 26989507
Alignment:
| Q |
1 |
aattaggatagacctttctgtccccaacacaagattcagatccttctccttcatttcagtcccatcatctcgagaaatcaccttatctttgaagaatttc |
100 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||| |||||| ||| | ||| ||| ||||||||||||||||||||| ||||||||||||||| ||| | |
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| T |
26989735 |
aattatgatagaattttctgtccccaacacaagatccagatctttcacgttcttttgagtcccatcatctcgagaaattaccttatctttgaagtattcc |
26989636 |
T |
|
| Q |
101 |
ccttgaggatcaagcagcctggccatctctaatgagtaccgccgatcacccatggtgtagatgtacatttcaaacattttacttgcttctttaagaaatg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
26989635 |
ccttgaggatcaagcagcctggccatctctaatgagtactgccgatcacccatggtgtagatgtacatttcaaacatttcacttgcttctttaagaaatg |
26989536 |
T |
|
| Q |
201 |
tgcggacaaagggcctcaacttggccatt |
229 |
Q |
| |
|
|||||||||||||||||||||||| |||| |
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|
| T |
26989535 |
tgcggacaaagggcctcaacttggtcatt |
26989507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 27028554 - 27028326
Alignment:
| Q |
1 |
aattaggatagacctttctgtccccaacacaagattcagatccttctccttcatttcagtcccatcatctcgagaaatcaccttatctttgaagaatttc |
100 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||| |||||||||| | ||| ||| ||||||||| ||||||||||| ||||||||||||||| | | |
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|
| T |
27028554 |
aattaagatagaattttctgtccccaacacaagatccagatccttcacgttcttttgagtcccatcctctcgagaaattaccttatctttgaagtagagc |
27028455 |
T |
|
| Q |
101 |
ccttgaggatcaagcagcctggccatctctaatgagtaccgccgatcacccatggtgtagatgtacatttcaaacattttacttgcttctttaagaaatg |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
27028454 |
ccttgaggatcaagcagcttggccatctctaacgagtaccgccgatcacccatggtgtagatgtacatttcaaacatttcacttgcttctttaagaaatg |
27028355 |
T |
|
| Q |
201 |
tgcggacaaagggcctcaacttggccatt |
229 |
Q |
| |
|
|||||||||||||||||||||||| |||| |
|
|
| T |
27028354 |
tgcggacaaagggcctcaacttggtcatt |
27028326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 27075565 - 27075793
Alignment:
| Q |
1 |
aattaggatagacctttctgtccccaacacaagattcagatccttctccttcatttcagtcccatcatctcgagaaatcaccttatctttgaagaatttc |
100 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||| |||||||||| | ||| ||| ||||||||| ||||||||||| ||||||||||||||| ||| | |
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|
| T |
27075565 |
aattaagatagaattttctgtccccaacacaagatccagatccttcacattcttttgagtcccatcctctcgagaaattaccttatctttgaagtattcc |
27075664 |
T |
|
| Q |
101 |
ccttgaggatcaagcagcctggccatctctaatgagtaccgccgatcacccatggtgtagatgtacatttcaaacattttacttgcttctttaagaaatg |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
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|
| T |
27075665 |
tcttgaggatcaagcagcctagccatctctaatgaatattgccgatcacccatggtgtagatgtacatttcaaacatttcacttgcttgtttaagaaatg |
27075764 |
T |
|
| Q |
201 |
tgcggacaaagggcctcaacttggccatt |
229 |
Q |
| |
|
|||||||||||||||||||||||| |||| |
|
|
| T |
27075765 |
tgcggacaaagggcctcaacttggtcatt |
27075793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 14 - 235
Target Start/End: Complemental strand, 27152691 - 27152470
Alignment:
| Q |
14 |
ctttctgtccccaacacaagattcagatccttctccttcatttcagtcccatcatctcgagaaatcaccttatctttgaagaatttcccttgaggatcaa |
113 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||| ||| | |||||||||||| |
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|
| T |
27152691 |
ctttttgtccccaacacaacattcagatccttctgcttcatttcagtcccatcatctcaataaatcaccttatctttgaagtattccacttgaggatcaa |
27152592 |
T |
|
| Q |
114 |
gcagcctggccatctctaatgagtaccgccgatcacccatggtgtagatgtacatttcaaacattttacttgcttctttaagaaatgtgcggacaaaggg |
213 |
Q |
| |
|
||||| |||||||||||| ||| ||| ||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||| ||||| |
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| T |
27152591 |
gcagcttggccatctctagtgaatactgccgaatacccatggtgtagatgtacatttcaaacacttcacttgcttctttaagaaatgtacggacgaaggg |
27152492 |
T |
|
| Q |
214 |
cctcaacttggccattctttgc |
235 |
Q |
| |
|
|||||||||| |||||||||| |
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|
| T |
27152491 |
cctcaacttgttcattctttgc |
27152470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 34691810 - 34691582
Alignment:
| Q |
1 |
aattaggatagacctttctgtccccaacacaagattcagatccttctccttcatttcagtcccatcatctcgagaaatcaccttatctttgaagaatttc |
100 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||| |||||| ||| | ||| ||| ||||||||||||||||||||| ||||||||||||||| ||| | |
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|
| T |
34691810 |
aattacgatagaattttctgtccccaacacaagatccagatctttcacgttcttttgagtcccatcatctcgagaaattaccttatctttgaagtattcc |
34691711 |
T |
|
| Q |
101 |
ccttgaggatcaagcagcctggccatctctaatgagtaccgccgatcacccatggtgtagatgtacatttcaaacattttacttgcttctttaagaaatg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
34691710 |
ccttgaggatcaagcagcctggccatctctaatgagtactgccgatcacccatggtgtagatgtacatttcaaacatttcacttgcttctttaagaaatg |
34691611 |
T |
|
| Q |
201 |
tgcggacaaagggcctcaacttggccatt |
229 |
Q |
| |
|
|||||||||||||||||||||||| |||| |
|
|
| T |
34691610 |
tgcggacaaagggcctcaacttggtcatt |
34691582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 58 - 222
Target Start/End: Original strand, 50172854 - 50173018
Alignment:
| Q |
58 |
agtcccatcatctcgagaaatcaccttatctttgaagaatttcccttgaggatcaagcagcctggccatctctaatgagtaccgccgatcacccatggtg |
157 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||| ||| |||||||||||||||||| |||||||||| |||| || ||| ||||||||||||| |
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|
| T |
50172854 |
agtcccatcatctcgagaaatcactttagaattgaagtattctccttgaggatcaagcagcttggccatctccaatgcatagggcctatcacccatggtg |
50172953 |
T |
|
| Q |
158 |
tagatgtacatttcaaacattttacttgcttctttaagaaatgtgcggacaaagggcctcaactt |
222 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
50172954 |
tagatgtacatctcaaacatttcacttgcttctttaagaaatgtacggacaaagggcctcaactt |
50173018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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