View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0942_high_1 (Length: 794)

Name: NF0942_high_1
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0942_high_1
NF0942_high_1
[»] chr3 (47 HSPs)
chr3 (5-742)||(5261910-5262648)
chr3 (319-739)||(5278640-5279060)
chr3 (5-317)||(5279211-5279524)
chr3 (337-608)||(6898194-6898465)
chr3 (141-254)||(6592653-6592766)
chr3 (123-239)||(6481271-6481387)
chr3 (131-254)||(6257818-6257941)
chr3 (123-226)||(8453276-8453379)
chr3 (140-254)||(6140902-6141016)
chr3 (162-254)||(6850600-6850692)
chr3 (131-254)||(6236341-6236464)
chr3 (140-239)||(8570257-8570356)
chr3 (140-254)||(6264298-6264412)
chr3 (696-742)||(6880488-6880534)
chr3 (130-272)||(7748600-7748742)
chr3 (140-254)||(13271852-13271966)
chr3 (481-742)||(6723875-6724136)
chr3 (696-737)||(6898065-6898106)
chr3 (504-612)||(6257304-6257412)
chr3 (337-612)||(6243419-6243694)
chr3 (696-742)||(5296717-5296763)
chr3 (685-731)||(6450792-6450838)
chr3 (685-739)||(6481983-6482037)
chr3 (696-742)||(6593364-6593410)
chr3 (685-731)||(6730720-6730766)
chr3 (162-226)||(6945912-6945976)
chr3 (667-735)||(7585853-7585921)
chr3 (555-591)||(7748125-7748161)
chr3 (571-619)||(8570835-8570883)
chr3 (668-739)||(4390896-4390967)
chr3 (667-734)||(5266062-5266129)
chr3 (198-253)||(6555811-6555866)
chr3 (667-730)||(6556697-6556760)
chr3 (667-730)||(6733661-6733724)
chr3 (198-253)||(6734564-6734619)
chr3 (699-742)||(6915073-6915116)
chr3 (696-730)||(6841579-6841613)
chr3 (699-733)||(6945252-6945286)
chr3 (696-742)||(7747974-7748020)
chr3 (701-742)||(6140258-6140299)
chr3 (701-742)||(6166869-6166910)
chr3 (701-742)||(6243289-6243330)
chr3 (701-742)||(6257174-6257215)
chr3 (701-742)||(6263654-6263695)
chr3 (555-612)||(6593223-6593280)
chr3 (141-250)||(8470177-8470286)
chr3 (701-742)||(13275420-13275461)
[»] scaffold1643 (2 HSPs)
scaffold1643 (88-230)||(810-952)
scaffold1643 (696-734)||(153-191)
[»] chr7 (1 HSPs)
chr7 (123-223)||(6574611-6574711)
[»] scaffold0425 (2 HSPs)
scaffold0425 (699-742)||(13548-13591)
scaffold0425 (696-730)||(9774-9808)
[»] scaffold0958 (1 HSPs)
scaffold0958 (171-239)||(1125-1193)


Alignment Details
Target: chr3 (Bit Score: 667; Significance: 0; HSPs: 47)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 667; E-Value: 0
Query Start/End: Original strand, 5 - 742
Target Start/End: Complemental strand, 5262648 - 5261910
Alignment:
Q  5 tctcgaacaaaatagcaacctgaatagtctcatcatcgaggactacagaggcactgactttctacattggcttagggactgttatttactcaacttggta 104  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||| ||||||||||||||||||||||||||    
T  5262648 tctcgaaccaaatagcaacctgaatagtctcatcatcgaggactacagaggcacaggctttccacattggcttggggactgttatttactcaacttggta 5262549  T
Q  105 tcccttgaactgaatagatgtggattttgttctcggttgccaccacttgggaagcttccctctcttaaggagctttctatttcagaatgttatggaatag 204  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5262548 tcccttgaactgaatagatgtggattttgttcccggttgccaccacttgggaagcttccctctcttaaagagctttctatttcagaatgttatggaatag 5262449  T
Q  205 agatcatcggtgaagagttttatggctataattcatcaactgttccatttgcttctcttgaaagtttgaaattt-ataacatgtacggttggaatgaatg 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  5262448 agatcatcggtgaagagttttatggctataattcatcaactgttccatttgcttctcttgaaagtttgaaatttgataacatgtacggttggaatgaatg 5262349  T
Q  304 gttatgtcctaaagttacatggatgtgtaaatgttttaataaatgaattgccaaccaacttgaaaaaggcctggcttggcggaactcgggtcattgagtc 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5262348 gttatgtcctaaagttacatggatgtgtaaatgttttaataaatgaattgccaaccaacttgaaaaaggcctggcttggcggaactcgggtcattgagtc 5262249  T
Q  404 ctctctagagcaaattttgttcaacagttcctctcttgaaaagttgtatgatggtgattacgatggtgaaaatcttaaatggccctcttttgatttgcga 503  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  5262248 ctctctagagcaaattttgttcaacagttcctcccttgaaaagttgtatgttggtgattacgatggtgaaaatcttgaatggccctcttttgatttgcga 5262149  T
Q  504 agctgtaattcactttgcactctgtctatatctggttggtgttcctcatcgttgccttttgcactgaacttgttcaccaatcttcattctctagatttgt 603  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5262148 agctgtaattcactttgcactctgtctatatctggttggtgttcctcatccttgccttttgcactgaacttgttcaccaatcttcattctctagatttgt 5262049  T
Q  604 acgattgtcgacagctcaaattgtttctgcaaagaggtttactttccagcttgagcaccctccgaataaacaaatgccctgaacttattgcatcgagaga 703  Q
    |||||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  5262048 acgattgtcgacagctcaaattgtttccacaaagaggtttaccttccagcttgagcaccctccgaataaacaaattccctgaacttattgcattgagaga 5261949  T
Q  704 ggagtggggtttgttcgaactcaattctctgaaagaatt 742  Q
    |||||||||||||||||||||||||||||||||||||||    
T  5261948 ggagtggggtttgttcgaactcaattctctgaaagaatt 5261910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 319 - 739
Target Start/End: Complemental strand, 5279060 - 5278640
Alignment:
Q  319 tacatggatgtgtaaatgttttaataaatgaattgccaaccaacttgaaaaaggcctggcttggcggaactcgggtcattgagtcctctctagagcaaat 418  Q
    |||| ||||||||||| ||||| |||||||||||||||||||||||||||||||| |  ||||| |||||||| |||||||||||||||||||| |||||    
T  5279060 tacacggatgtgtaaacgttttcataaatgaattgccaaccaacttgaaaaaggcttaccttggaggaactcgtgtcattgagtcctctctagaacaaat 5278961  T
Q  419 tttgttcaacagttcctctcttgaaaagttgtatgatggtgattacgatggtgaaaatcttaaatggccctcttttgatttgcgaagctgtaattcactt 518  Q
    ||||||||||||||||||||||||| ||||| ||| |||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  5278960 tttgttcaacagttcctctcttgaacagttgaatgttggtgactacgatggtgaaaatcttgaatggccctcttttgatttgcgaagttgtaattcactt 5278861  T
Q  519 tgcactctgtctatatctggttggtgttcctcatcgttgccttttgcactgaacttgttcaccaatcttcattctctagatttgtacgattgtcgacagc 618  Q
    ||||||||||||||||| || |||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||| |||||||    
T  5278860 tgcactctgtctatatccggatggtgttcctcatccttgccttttgcacttaacttgtccaccaatcttcattctctagatttgtatgattgccgacagc 5278761  T
Q  619 tcaaattgtttctgcaaagaggtttactttccagcttgagcaccctccgaataaacaaatgccctgaacttattgcatcgagagaggagtggggtttgtt 718  Q
    |||||| |||||  |||||||||||||  ||| || |||| | ||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||    
T  5278760 tcaaatcgtttccacaaagaggtttaccgtcccgcctgagtagcctccgaataaacaaatgccctgaactgattgcatcaagaaaggagtggggtttgtt 5278661  T
Q  719 cgaactcaattctctgaaaga 739  Q
    |||||| ||||||||||||||    
T  5278660 cgaactaaattctctgaaaga 5278640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 5 - 317
Target Start/End: Complemental strand, 5279524 - 5279211
Alignment:
Q  5 tctcgaacaaaatagcaacctgaatagtctcatcatcgaggactacagaggcactgactttctacattggcttagggactgttatttactcaacttggta 104  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||| || |||    
T  5279524 tctcgaaccaaatagcaacctcaatagtctcatcatcgaggactacagaggcactggctttccacattggcttggggactgttatttactcaatttagta 5279425  T
Q  105 tcccttgaactgaatagatgtggattttgttctcggttgccaccacttgggaagcttccctctcttaaggagctttctatttcagaatgttatggaatag 204  Q
    |||||||||||||||||||||||||||||||  | ||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  5279424 tcccttgaactgaatagatgtggattttgtttccagtttccaccacttgggcagcttccctctcttaaggagctttctatttcagaatgtgatggaatag 5279325  T
Q  205 agatcatcggtgaagagttttatggctataattcatcaactgttccatttgcttctcttgaaagtttgaaattt-ataacatgtacggttggaatgaatg 303  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||| |||||||||||||||||||||||||    
T  5279324 agattatcggtgaagagttttatggctataattcatcaactgttccattcgcttcccttgaaaatttgaaatttgataacatgtacggttggaatgaatg 5279225  T
Q  304 gttatgtcctaaag 317  Q
    ||||||| ||||||    
T  5279224 gttatgtactaaag 5279211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 337 - 608
Target Start/End: Complemental strand, 6898465 - 6898194
Alignment:
Q  337 ttttaataaatgaattgccaaccaacttgaaaaaggcctggcttggcggaactcgggtcattgagtcctctctagagcaaattttgttcaacagttcctc 436  Q
    |||| ||||||||||||||| ||| |||||||||||||   ||| | ||||||| ||||||||| ||| | |||||| ||||| | || | |||| |||     
T  6898465 ttttgataaatgaattgccatccagcttgaaaaaggccatcctttgtggaactcaggtcattgaatccgccctagagaaaattctatttagcagtgcctt 6898366  T
Q  437 tcttgaaaagttgtatgatggtgattacgatggtgaaaatcttaaatggccctcttttgatttgcgaagctgtaattcactttgcactctgtctatatct 536  Q
    |||||||  |||  | | ||  || | |  |||| |||||||  ||||| ||||||| ||| || | |||||||||||||||||||||||  ||||| |     
T  6898365 tcttgaagtgttagaagttgaagacttctttggtcaaaatctagaatggtcctctttggatatgtgtagctgtaattcactttgcactctaactataaca 6898266  T
Q  537 ggttggtgttcctcatcgttgccttttgcactgaacttgttcaccaatcttcattctctagatttgtacgat 608  Q
    ||||||   || || || ||||| ||||||||| ||||||||||||||||||||||||| |  |||||||||    
T  6898265 ggttggcactcttcctccttgccatttgcactgcacttgttcaccaatcttcattctctggtgttgtacgat 6898194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 141 - 254
Target Start/End: Original strand, 6592653 - 6592766
Alignment:
Q  141 ttgccaccacttgggaagcttccctctcttaaggagctttctatttcagaatgttatggaatagagatcatcggtgaagagttttatggctataattcat 240  Q
    ||||||||||||||| || | |||||||| ||| |||||||  ||||||  ||| |||||||||||||||| |||  ||| ||||| |||||||||||||    
T  6592653 ttgccaccacttgggcagttcccctctctcaagaagctttccttttcaggctgtgatggaatagagatcattggtacagaattttacggctataattcat 6592752  T
Q  241 caactgttccattt 254  Q
    ||| ||||||||||    
T  6592753 caaatgttccattt 6592766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 123 - 239
Target Start/End: Original strand, 6481271 - 6481387
Alignment:
Q  123 tgtggattttgttctcggttgccaccacttgggaagcttccctctcttaaggagctttctatttcagaatgttatggaatagagatcatcggtgaagagt 222  Q
    |||||||| |||||||  ||||||||||||||| | || |||||||| | |||||||||||||||| | ||| |  ||||| ||||||||||||||||||    
T  6481271 tgtggattatgttctcatttgccaccacttgggcaactcccctctctcagggagctttctatttcaaactgtaaaagaataaagatcatcggtgaagagt 6481370  T
Q  223 tttatggctataattca 239  Q
    | |||||  ||||||||    
T  6481371 tatatggaaataattca 6481387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 131 - 254
Target Start/End: Complemental strand, 6257941 - 6257818
Alignment:
Q  131 ttgttctcggttgccaccacttgggaagcttccctctcttaaggagctttctatttcagaatgttatggaatagagatcatcggtgaagagttttatggc 230  Q
    |||||| | ||||||||||||||||||| | || ||||| ||| ||||||| |||||||  ||| |||||||| ||||||| |||  ||||||||  |||    
T  6257941 ttgttcccagttgccaccacttgggaagttcccttctctcaagaagctttccatttcaggctgtcatggaataaagatcattggttcagagttttgcggc 6257842  T
Q  231 tataattcatcaactgttccattt 254  Q
    ||||||||||||| |||| |||||    
T  6257841 tataattcatcaaatgttgcattt 6257818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 123 - 226
Target Start/End: Complemental strand, 8453379 - 8453276
Alignment:
Q  123 tgtggattttgttctcggttgccaccacttgggaagcttccctctcttaaggagctttctatttcagaatgttatggaatagagatcatcggtgaagagt 222  Q
    |||||||| ||||||  |||||||||||||||||  || |||| ||| |||  ||||||||||||||| ||| |||||||| ||||||| ||||||||||    
T  8453379 tgtggattatgttctttgttgccaccacttgggacactcccctttctcaagatgctttctatttcagactgtgatggaataaagatcataggtgaagagt 8453280  T
Q  223 ttta 226  Q
    ||||    
T  8453279 ttta 8453276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 140 - 254
Target Start/End: Complemental strand, 6141016 - 6140902
Alignment:
Q  140 gttgccaccacttgggaagcttccctctcttaaggagctttctatttcagaatgttatggaatagagatcatcggtgaagagttttatggctataattca 239  Q
    |||||||||||||||| || | || ||||| ||| ||||||| |||||||  ||| |||||||||||||||| |||  ||||||||   |||||||||||    
T  6141016 gttgccaccacttgggcagttcccttctctcaagaagctttccatttcaggctgtcatggaatagagatcattggttcagagttttgcagctataattca 6140917  T
Q  240 tcaactgttccattt 254  Q
    |||| |||| |||||    
T  6140916 tcaaatgttgcattt 6140902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 162 - 254
Target Start/End: Original strand, 6850600 - 6850692
Alignment:
Q  162 ccctctcttaaggagctttctatttcagaatgttatggaatagagatcatcggtgaagagttttatggctataattcatcaactgttccattt 254  Q
    |||||||| ||| | ||||| |||||||  ||| |||||||||||||||| |||  ||||||||| ||||| |||||||||| ||||||||||    
T  6850600 ccctctctcaagaatctttccatttcaggctgtgatggaatagagatcattggtccagagttttacggctacaattcatcaaatgttccattt 6850692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 131 - 254
Target Start/End: Complemental strand, 6236464 - 6236341
Alignment:
Q  131 ttgttctcggttgccaccacttgggaagcttccctctcttaaggagctttctatttcagaatgttatggaatagagatcatcggtgaagagttttatggc 230  Q
    |||||| | |||||||||||||||| || | || ||||| ||| ||||||| || |||| |||| ||||||||  | |||| |||  ||||||||  |||    
T  6236464 ttgttcccagttgccaccacttgggcagttcccttctctcaagaagctttccatatcaggatgtcatggaataacgttcattggttcagagttttgcggc 6236365  T
Q  231 tataattcatcaactgttccattt 254  Q
    ||||||||||||| ||||||||||    
T  6236364 tataattcatcaaatgttccattt 6236341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 239
Target Start/End: Original strand, 8570257 - 8570356
Alignment:
Q  140 gttgccaccacttgggaagcttccctctcttaaggagctttctatttcagaatgttatggaatagagatcatcggtgaagagttttatggctataattca 239  Q
    |||||| ||||||||| |||| |||| ||| |||||||||||||||||| | |||||||| ||||| ||||| ||  |||||||||| ||| ||| ||||    
T  8570257 gttgccgccacttgggcagctcccctatctcaaggagctttctatttcatattgttatggtatagaaatcattggcaaagagttttacggcaatagttca 8570356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 254
Target Start/End: Complemental strand, 6264412 - 6264298
Alignment:
Q  140 gttgccaccacttgggaagcttccctctcttaaggagctttctatttcagaatgttatggaatagagatcatcggtgaagagttttatggctataattca 239  Q
    |||||||||||||||| || | || ||||| ||| ||||||| |||||||  ||| ||||| |||||||||| |||  ||||||||   |||||||||||    
T  6264412 gttgccaccacttgggcagttcccttctctcaagaagctttccatttcaggctgtcatggagtagagatcattggttcagagttttgccgctataattca 6264313  T
Q  240 tcaactgttccattt 254  Q
     ||| ||||||||||    
T  6264312 gcaaatgttccattt 6264298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 696 - 742
Target Start/End: Complemental strand, 6880534 - 6880488
Alignment:
Q  696 tcgagagaggagtggggtttgttcgaactcaattctctgaaagaatt 742  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||    
T  6880534 tcgagagaggagtggggtttgttccaactcaattctctgaaacaatt 6880488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 272
Target Start/End: Complemental strand, 7748742 - 7748600
Alignment:
Q  130 tttgttctcggttgccaccacttgggaagcttccctctcttaaggagctttctatttcagaatgttatggaatagagatcatcggtgaagagttttatgg 229  Q
    ||||||| | ||| ||| |||||||| || | | |||||| ||| ||||||| |||||||  ||  ||||||||||||| || |||| |||| ||| |||    
T  7748742 tttgttcccagttaccatcacttgggcagttccactctctcaagaagctttccatttcaggctgcgatggaatagagattattggtgcagagatttgtgg 7748643  T
Q  230 ctataattcatcaactgttccatttgcttctcttgaaagtttg 272  Q
    |||||||||||||| |||| |||||   |||||||||| ||||    
T  7748642 ctataattcatcaaatgtttcatttagatctcttgaaactttg 7748600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 254
Target Start/End: Original strand, 13271852 - 13271966
Alignment:
Q  140 gttgccaccacttgggaagcttccctctcttaaggagctttctatttcagaatgttatggaatagagatcatcggtgaagagttttatggctataattca 239  Q
    |||||||||||||||| || | || |||||  || ||||||| ||||| |  ||| |||||||||||||||| |||  ||||||||  ||||||||| ||    
T  13271852 gttgccaccacttgggcagttgccttctctcgagaagctttccatttctggctgtcatggaatagagatcattggttcagagttttgcggctataatcca 13271951  T
Q  240 tcaactgttccattt 254  Q
    |||| ||||||||||    
T  13271952 tcaaatgttccattt 13271966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 481 - 742
Target Start/End: Original strand, 6723875 - 6724136
Alignment:
Q  481 aatggccctcttttgatttgcgaagctgtaattcactttgcactctgtctatatctggttggtgttcctcatcgttgccttttgcactgaacttgttcac 580  Q
    ||||| ||||||| ||| || | ||||||||||| ||| |||||||  ||||| | ||||||   || || || ||||||||||| ||  ||||| ||||    
T  6723875 aatggtcctctttggatatgtgtagctgtaattctcttcgcactctaactataacaggttggcactcttcctccttgccttttgctctacacttgctcac 6723974  T
Q  581 caatcttcattctctagatttgtacgattgtcgacagctcaaattgtttctgcaaagaggtttactttccagcttgagcaccctccgaataaacaaatgc 680  Q
    ||||||| ||||||| | |||||||||||||| || |||  | | |||| |    ||    |||| ||||||| |  ||| |||||||||| | | |||     
T  6723975 caatcttaattctctcgttttgtacgattgtccactgctggagtcgtttttcggcaggcagttaccttccagcctatgcagcctccgaatagaaagatgt 6724074  T
Q  681 cctgaacttattgcatcgagagaggagtggggtttgttcgaactcaattctctgaaagaatt 742  Q
    ||| || | || || |||||||||||||||||||||||| ||||| ||||||||||| ||||    
T  6724075 cctaaattaatggcttcgagagaggagtggggtttgttccaactcgattctctgaaacaatt 6724136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 696 - 737
Target Start/End: Complemental strand, 6898106 - 6898065
Alignment:
Q  696 tcgagagaggagtggggtttgttcgaactcaattctctgaaa 737  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  6898106 tcgagagaggagtggggtttgttccaactcaattctctgaaa 6898065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 504 - 612
Target Start/End: Complemental strand, 6257412 - 6257304
Alignment:
Q  504 agctgtaattcactttgcactctgtctatatctggttggtgttcctcatcgttgccttttgcactgaacttgttcaccaatcttcattctctagatttgt 603  Q
    |||||| |||| |||||||||||  ||||| | ||||||   || || || ||||||||||||||  ||||||||||||||||| ||||||| |  ||||    
T  6257412 agctgttattccctttgcactctaactataacaggttggcactcttcttccttgccttttgcactacacttgttcaccaatcttaattctctcgtgttgt 6257313  T
Q  604 acgattgtc 612  Q
    |||||||||    
T  6257312 acgattgtc 6257304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 337 - 612
Target Start/End: Complemental strand, 6243694 - 6243419
Alignment:
Q  337 ttttaataaatgaattgccaaccaacttgaaaaaggcctggcttggcggaactcgggtcattgagtcctctctagagcaaattttgttcaacagttcctc 436  Q
    |||| |||||| ||||| || ||||||||||||||| |   ||| | ||||||| | ||||||| ||| | |||||| ||||| | || |||||| |||     
T  6243694 ttttgataaataaattgtcatccaacttgaaaaaggtcatcctttgtggaactcagatcattgaatccgccctagagaaaattctatttaacagtacctt 6243595  T
Q  437 tcttgaaaagttgtatgatggtgattacgatggtgaaaatcttaaatggccctcttttgatttgcgaagctgtaattcactttgcactctgtctatatct 536  Q
    ||||||| | ||| | | ||  || | |  |||| |||||||  ||||| ||||||| ||| |||| ||||||||||| ||| ||||| |  | ||| |     
T  6243594 tcttgaagaattggaagttgaagacttctttggtcaaaatctagaatggtcctctttggatatgcgtagctgtaattctcttcgcactttaaccataaca 6243495  T
Q  537 ggttggtgttcctcatcgttgccttttgcactgaacttgttcaccaatcttcattctctagatttgtacgattgtc 612  Q
     |||||   || || || ||||||||||||||  ||||||||||||||||| ||||||| |  |||||||||||||    
T  6243494 agttggcactcttcctccttgccttttgcactacacttgttcaccaatcttaattctctcgtgttgtacgattgtc 6243419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 696 - 742
Target Start/End: Complemental strand, 5296763 - 5296717
Alignment:
Q  696 tcgagagaggagtggggtttgttcgaactcaattctctgaaagaatt 742  Q
    ||||||||| ||||||| |||||| ||||||||||||||||||||||    
T  5296763 tcgagagagaagtgggggttgttccaactcaattctctgaaagaatt 5296717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 685 - 731
Target Start/End: Original strand, 6450792 - 6450838
Alignment:
Q  685 aacttattgcatcgagagaggagtggggtttgttcgaactcaattct 731  Q
    |||| ||||| |||||||||||||||||||||||| |||||||||||    
T  6450792 aactgattgcttcgagagaggagtggggtttgttccaactcaattct 6450838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 685 - 739
Target Start/End: Original strand, 6481983 - 6482037
Alignment:
Q  685 aacttattgcatcgagagaggagtggggtttgttcgaactcaattctctgaaaga 739  Q
    |||| ||||| || ||||| ||||||||||||||| |||||||||||||||||||    
T  6481983 aactgattgcttcaagagaagagtggggtttgttccaactcaattctctgaaaga 6482037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 696 - 742
Target Start/End: Original strand, 6593364 - 6593410
Alignment:
Q  696 tcgagagaggagtggggtttgttcgaactcaattctctgaaagaatt 742  Q
    |||||||||||||||||||||||| ||||| ||||||||||| ||||    
T  6593364 tcgagagaggagtggggtttgttccaactcgattctctgaaacaatt 6593410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 685 - 731
Target Start/End: Original strand, 6730720 - 6730766
Alignment:
Q  685 aacttattgcatcgagagaggagtggggtttgttcgaactcaattct 731  Q
    |||| ||||| |||||||||||||||||||||||| |||||||||||    
T  6730720 aactgattgcttcgagagaggagtggggtttgttccaactcaattct 6730766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 226
Target Start/End: Complemental strand, 6945976 - 6945912
Alignment:
Q  162 ccctctcttaaggagctttctatttcagaatgttatggaatagagatcatcggtgaagagtttta 226  Q
    |||||||| |||||| ||||||||||| | ||| | |||||| |||||||||| |||||||||||    
T  6945976 ccctctctcaaggagatttctatttcaaactgtaacggaataaagatcatcggcgaagagtttta 6945912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 667 - 735
Target Start/End: Complemental strand, 7585921 - 7585853
Alignment:
Q  667 gaataaacaaatgccctgaacttattgcatcgagagaggagtggggtttgttcgaactcaattctctga 735  Q
    ||||| |||| |||||  |||| ||||| | ||||||| |||||||||||||| |||||||||||||||    
T  7585921 gaatatacaattgcccaaaactgattgctttgagagagcagtggggtttgttccaactcaattctctga 7585853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 555 - 591
Target Start/End: Complemental strand, 7748161 - 7748125
Alignment:
Q  555 ttgccttttgcactgaacttgttcaccaatcttcatt 591  Q
    ||||||||||||||| |||||||||||||||||||||    
T  7748161 ttgccttttgcactgcacttgttcaccaatcttcatt 7748125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 571 - 619
Target Start/End: Original strand, 8570835 - 8570883
Alignment:
Q  571 acttgttcaccaatcttcattctctagatttgtacgattgtcgacagct 619  Q
    ||||||||||||||||||||| |||||| |||| |||||||| ||||||    
T  8570835 acttgttcaccaatcttcattatctagagttgtccgattgtccacagct 8570883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 668 - 739
Target Start/End: Original strand, 4390896 - 4390967
Alignment:
Q  668 aataaacaaatgccctgaacttattgcatcgagagaggagtggggtttgttcgaactcaattctctgaaaga 739  Q
    ||||| ||| |||||  |||| ||||| | ||||| |||||||||||||||| ||||||||||||| |||||    
T  4390896 aataatcaagtgcccaaaactaattgctttgagaggggagtggggtttgttccaactcaattctctaaaaga 4390967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 667 - 734
Target Start/End: Complemental strand, 5266129 - 5266062
Alignment:
Q  667 gaataaacaaatgccctgaacttattgcatcgagagaggagtggggtttgttcgaactcaattctctg 734  Q
    |||||| ||| |||||  |||| ||||| ||||||| |||||||||||||||| |||| |||||||||    
T  5266129 gaataaccaagtgcccaaaactaattgcttcgagaggggagtggggtttgttccaactaaattctctg 5266062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 253
Target Start/End: Original strand, 6555811 - 6555866
Alignment:
Q  198 ggaatagagatcatcggtgaagagttttatggctataattcatcaactgttccatt 253  Q
    |||||| ||||||| | |||||||||||||||| |||||||| ||| |||||||||    
T  6555811 ggaataaagatcattgatgaagagttttatggcaataattcaacaattgttccatt 6555866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 667 - 730
Target Start/End: Original strand, 6556697 - 6556760
Alignment:
Q  667 gaataaacaaatgccctgaacttattgcatcgagagaggagtggggtttgttcgaactcaattc 730  Q
    ||||| |||| |||||  |||| ||||  |||||||||||||||||||||||| ||||||||||    
T  6556697 gaatatacaattgcccaaaactgattggttcgagagaggagtggggtttgttccaactcaattc 6556760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 667 - 730
Target Start/End: Complemental strand, 6733724 - 6733661
Alignment:
Q  667 gaataaacaaatgccctgaacttattgcatcgagagaggagtggggtttgttcgaactcaattc 730  Q
    ||||| |||| |||||  |||| ||||  |||||||||||||||||||||||| ||||||||||    
T  6733724 gaatacacaattgcccaaaactgattggttcgagagaggagtggggtttgttccaactcaattc 6733661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 253
Target Start/End: Complemental strand, 6734619 - 6734564
Alignment:
Q  198 ggaatagagatcatcggtgaagagttttatggctataattcatcaactgttccatt 253  Q
    |||||| ||||||| | |||||||||||||||| |||||||| ||| |||||||||    
T  6734619 ggaataaagatcattgatgaagagttttatggcaataattcaacaattgttccatt 6734564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 699 - 742
Target Start/End: Complemental strand, 6915116 - 6915073
Alignment:
Q  699 agagaggagtggggtttgttcgaactcaattctctgaaagaatt 742  Q
    ||||||||||||||||||||| ||||||||||||| ||| ||||    
T  6915116 agagaggagtggggtttgttccaactcaattctctaaaacaatt 6915073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 696 - 730
Target Start/End: Original strand, 6841579 - 6841613
Alignment:
Q  696 tcgagagaggagtggggtttgttcgaactcaattc 730  Q
    |||||||||||||||||||||||| ||||||||||    
T  6841579 tcgagagaggagtggggtttgttccaactcaattc 6841613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 699 - 733
Target Start/End: Complemental strand, 6945286 - 6945252
Alignment:
Q  699 agagaggagtggggtttgttcgaactcaattctct 733  Q
    ||||||||||||||||||||| |||||||||||||    
T  6945286 agagaggagtggggtttgttccaactcaattctct 6945252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 696 - 742
Target Start/End: Complemental strand, 7748020 - 7747974
Alignment:
Q  696 tcgagagaggagtggggtttgttcgaactcaattctctgaaagaatt 742  Q
    |||||||||||||||||||||||| ||||||| ||||| ||| ||||    
T  7748020 tcgagagaggagtggggtttgttccaactcaaatctctaaaacaatt 7747974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 701 - 742
Target Start/End: Complemental strand, 6140299 - 6140258
Alignment:
Q  701 agaggagtggggtttgttcgaactcaattctctgaaagaatt 742  Q
    ||||||||||||||||||| ||||||| ||||||||| ||||    
T  6140299 agaggagtggggtttgttcaaactcaaatctctgaaacaatt 6140258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 701 - 742
Target Start/End: Complemental strand, 6166910 - 6166869
Alignment:
Q  701 agaggagtggggtttgttcgaactcaattctctgaaagaatt 742  Q
    ||||||||||||||||||| ||||||| ||||||||| ||||    
T  6166910 agaggagtggggtttgttcaaactcaaatctctgaaacaatt 6166869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 701 - 742
Target Start/End: Complemental strand, 6243330 - 6243289
Alignment:
Q  701 agaggagtggggtttgttcgaactcaattctctgaaagaatt 742  Q
    ||||||||||||||||||| ||||||| ||||||||| ||||    
T  6243330 agaggagtggggtttgttccaactcaaatctctgaaacaatt 6243289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 701 - 742
Target Start/End: Complemental strand, 6257215 - 6257174
Alignment:
Q  701 agaggagtggggtttgttcgaactcaattctctgaaagaatt 742  Q
    ||||||||||||||||||| ||||||| ||||||||| ||||    
T  6257215 agaggagtggggtttgttccaactcaaatctctgaaacaatt 6257174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 701 - 742
Target Start/End: Complemental strand, 6263695 - 6263654
Alignment:
Q  701 agaggagtggggtttgttcgaactcaattctctgaaagaatt 742  Q
    ||||||||||||||||||| ||||||| ||||||||| ||||    
T  6263695 agaggagtggggtttgttccaactcaaatctctgaaacaatt 6263654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 555 - 612
Target Start/End: Original strand, 6593223 - 6593280
Alignment:
Q  555 ttgccttttgcactgaacttgttcaccaatcttcattctctagatttgtacgattgtc 612  Q
    ||||||||||| ||  ||||| ||||||||||| ||||||| | ||||||||||||||    
T  6593223 ttgccttttgctctacacttgctcaccaatcttaattctctcgttttgtacgattgtc 6593280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 250
Target Start/End: Complemental strand, 8470286 - 8470177
Alignment:
Q  141 ttgccaccacttgggaagcttccctctcttaaggagctttctatttcagaatgttatggaatagagatcatcggtgaagagttttatggctataattcat 240  Q
    ||||||||||||||  |||| || | ||| ||||||||| |||| |  || ||| |||||||| |||| || |||||||||||| ||||| | ||||||     
T  8470286 ttgccaccacttggacagctcccgtgtctcaaggagcttgctatctgtgactgtcatggaataaagataattggtgaagagtttcatggcaacaattcaa 8470187  T
Q  241 caactgttcc 250  Q
    ||| ||||||    
T  8470186 caaatgttcc 8470177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 701 - 742
Target Start/End: Original strand, 13275420 - 13275461
Alignment:
Q  701 agaggagtggggtttgttcgaactcaattctctgaaagaatt 742  Q
    ||||||||||||||||||| ||||||| ||||||||| ||||    
T  13275420 agaggagtggggtttgttcaaactcaaatctctgaaacaatt 13275461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1643 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: scaffold1643
Description:

Target: scaffold1643; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 88 - 230
Target Start/End: Complemental strand, 952 - 810
Alignment:
Q  88 atttactcaacttggtatcccttgaactgaatagatgtggattttgttctcggttgccaccacttgggaagcttccctctcttaaggagctttctatttc 187  Q
    |||||| |||||| ||||| ||| |||||   || |||||||| ||||| |  || |||||||||||| ||||||| ||||| ||| | |||||||||||    
T  952 atttacccaacttagtatctcttcaactgttaagctgtggattatgttcccattttccaccacttgggcagcttccttctctcaagaatctttctatttc 853  T
Q  188 agaatgttatggaatagagatcatcggtgaagagttttatggc 230  Q
    | | ||| |||||||| ||||||| ||||||||| || |||||    
T  852 atattgtgatggaataaagatcattggtgaagagattcatggc 810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1643; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 696 - 734
Target Start/End: Complemental strand, 191 - 153
Alignment:
Q  696 tcgagagaggagtggggtttgttcgaactcaattctctg 734  Q
    ||||||||||||||| |||||||| ||||||||||||||    
T  191 tcgagagaggagtggagtttgttccaactcaattctctg 153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 223
Target Start/End: Original strand, 6574611 - 6574711
Alignment:
Q  123 tgtggattttgttctcggttgccaccacttgggaagcttccctctcttaaggagctttctatttcagaatgttatggaatagagatcatcggtgaagagt 222  Q
    |||||||||||||| | ||| || ||||||||  |||| || | ||| ||||||||||  |||||||  ||| |||||||| ||||||||||||||||||    
T  6574611 tgtggattttgttccctgtttccgccacttggacagctcccatgtctcaaggagcttttcatttcaggttgtaatggaataaagatcatcggtgaagagt 6574710  T
Q  223 t 223  Q
    |    
T  6574711 t 6574711  T

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Target: scaffold0425 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 699 - 742
Target Start/End: Original strand, 13548 - 13591
Alignment:
Q  699 agagaggagtggggtttgttcgaactcaattctctgaaagaatt 742  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||    
T  13548 agagaggagtggggtttgttccaactcaattctctgaaacaatt 13591  T

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Target: scaffold0425; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 696 - 730
Target Start/End: Original strand, 9774 - 9808
Alignment:
Q  696 tcgagagaggagtggggtttgttcgaactcaattc 730  Q
    |||||||||||||||||||||||| ||||||||||    
T  9774 tcgagagaggagtggggtttgttccaactcaattc 9808  T

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Target: scaffold0958 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0958
Description:

Target: scaffold0958; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 239
Target Start/End: Original strand, 1125 - 1193
Alignment:
Q  171 aaggagctttctatttcagaatgttatggaatagagatcatcggtgaagagttttatggctataattca 239  Q
    |||||||||| ||||||| | |||||||||||||| ||||| ||  |||||||||||||  ||||||||    
T  1125 aaggagctttatatttcatattgttatggaatagaaatcattggcaaagagttttatggaaataattca 1193  T

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