View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0942_high_104 (Length: 265)

Name: NF0942_high_104
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0942_high_104
NF0942_high_104
[»] chr7 (18 HSPs)
chr7 (1-239)||(26088167-26088405)
chr7 (1-239)||(26111955-26112193)
chr7 (1-232)||(26128959-26129190)
chr7 (1-239)||(19103071-19103309)
chr7 (1-212)||(26155600-26155811)
chr7 (2-232)||(26186634-26186871)
chr7 (1-223)||(26191666-26191888)
chr7 (42-239)||(26179468-26179665)
chr7 (56-187)||(26251285-26251416)
chr7 (42-189)||(26302244-26302391)
chr7 (56-191)||(26242833-26242968)
chr7 (56-191)||(26297881-26298016)
chr7 (56-156)||(26278167-26278267)
chr7 (54-210)||(26204299-26204455)
chr7 (54-210)||(26223937-26224093)
chr7 (47-189)||(26260307-26260449)
chr7 (47-112)||(26227484-26227549)
chr7 (47-117)||(26207918-26207988)
[»] chr4 (1 HSPs)
chr4 (42-191)||(44903686-44903835)
[»] chr5 (1 HSPs)
chr5 (54-103)||(5995053-5995102)


Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 26088405 - 26088167
Alignment:
Q  1 cctcaaaatcttgaaggaaagtgttttcactctcatccctctcatatttccttacaacccagataaaattatgacctgaattttcaagaccgtgtgcaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  26088405 cctcaaaatcttgaaggaaagtgttttcactctcatccctctcatatttccttacaacccagataaaattatgacctgaattttcgagaccgtgtgcaat 26088306  T
Q  101 ttctacaatctgagcattatcaagcccagttagacttccaaaacttacatacaatacggactcattttcctttgagttaagccaatttagccactcttcc 200  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26088305 ttctacaatctgagcattatcaagcctaattagacttccaaaacttacatacaatacggactcattttcctttgagttaagccaatttagccactcttcc 26088206  T
Q  201 tcttttccaagctcctctatgtgtcccctattggccttt 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  26088205 tcttttccaagctcctctatgtgtcccctattggccttt 26088167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 26112193 - 26111955
Alignment:
Q  1 cctcaaaatcttgaaggaaagtgttttcactctcatccctctcatatttccttacaacccagataaaattatgacctgaattttcaagaccgtgtgcaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  26112193 cctcaaaatcttgaaggaaagtgttttcactctcatccctctcatatttccttacaacccagataaaattatgacctgaattttcgagaccgtgtgcaat 26112094  T
Q  101 ttctacaatctgagcattatcaagcccagttagacttccaaaacttacatacaatacggactcattttcctttgagttaagccaatttagccactcttcc 200  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26112093 ttctacaatctgagcattatcaagcctaattagacttccaaaacttacatacaatacggactcattttcctttgagttaagccaatttagccactcttcc 26111994  T
Q  201 tcttttccaagctcctctatgtgtcccctattggccttt 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  26111993 tcttttccaagctcctctatgtgtcccctattggccttt 26111955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 26129190 - 26128959
Alignment:
Q  1 cctcaaaatcttgaaggaaagtgttttcactctcatccctctcatatttccttacaacccagataaaattatgacctgaattttcaagaccgtgtgcaat 100  Q
    |||||||||||||||||||| |||||||||||||||| ||||| | ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  26129190 cctcaaaatcttgaaggaaattgttttcactctcatcgctctcctttttccttacaacccatataaaattatgacctgaattttcgagaccgtgtgcaat 26129091  T
Q  101 ttctacaatctgagcattatcaagcccagttagacttccaaaacttacatacaatacggactcattttcctttgagttaagccaatttagccactcttcc 200  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||| ||| ||    
T  26129090 ttctacaatctgagcattatcaagcctagttagacttccaaaacttacatacagtacggactcattttgctttgagttaagccaatttaaccagtctgcc 26128991  T
Q  201 tcttttccaagctcctctatgtgtcccctatt 232  Q
    ||||||||||||||||||||||||||||||||    
T  26128990 tcttttccaagctcctctatgtgtcccctatt 26128959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 19103071 - 19103309
Alignment:
Q  1 cctcaaaatcttgaaggaaagtgttttcactctcatccctctcatatttccttacaacccagataaaattatgacctgaattttcaagaccgtgtgcaat 100  Q
    ||||||||||||| || ||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  19103071 cctcaaaatcttgtagaaaactgttttcactctcatctctctcatttttccttacaacccagataaaattatgacctgaattttcaagaccgtgtgcgat 19103170  T
Q  101 ttctacaatctgagcattatcaagcccagttagacttccaaaacttacatacaatacggactcattttcctttgagttaagccaatttagccactcttcc 200  Q
    ||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  19103171 ttctacaatctgatcattttcaagcctagttagacttccaaaacttacatacaatacagactcattttgctttgagttaagccaatttagccactcttcc 19103270  T
Q  201 tcttttccaagctcctctatgtgtcccctattggccttt 239  Q
    |||||||| | |||||||| ||| |||||| ||||||||    
T  19103271 tcttttccgatctcctctacgtgccccctactggccttt 19103309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 26155811 - 26155600
Alignment:
Q  1 cctcaaaatcttgaaggaaagtgttttcactctcatccctctcatatttccttacaacccagataaaattatgacctgaattttcaagaccgtgtgcaat 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  26155811 cctcaaaatcttgaaggaaagtgttttcactctcatcgctctcctttttccttacaacccagataaaattatgacctgaattttcgagaccgtgtgcaat 26155712  T
Q  101 ttctacaatctgagcattatcaagcccagttagacttccaaaacttacatacaatacggactcattttcctttgagttaagccaatttagccactcttcc 200  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||  ||    
T  26155711 ttctacaatctgagcattatcaagcctagttagacttccaaaacttacatacaatacggactcattttgctttgtgttaagccaatttaaccactcggcc 26155612  T
Q  201 tcttttccaagc 212  Q
    ||||||||||||    
T  26155611 tcttttccaagc 26155600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 2 - 232
Target Start/End: Complemental strand, 26186871 - 26186634
Alignment:
Q  2 ctcaaaatcttgaaggaaagtgttttcactctcatccctctcatatttcctta-------caacccagataaaattatgacctgaattttcaagaccgtg 94  Q
    |||||||||||| ||||||||||||||||||||||| || || | ||||||||       |||||||||||||||||||| |||||||||||||||||||    
T  26186871 ctcaaaatcttgtaggaaagtgttttcactctcatctctttcctttttccttataagttacaacccagataaaattatgatctgaattttcaagaccgtg 26186772  T
Q  95 tgcaatttctacaatctgagcattatcaagcccagttagacttccaaaacttacatacaatacggactcattttcctttgagttaagccaatttagccac 194  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||| |||||||||| ||| |||||||||||||||||||||||||    
T  26186771 tgcaatttctacaatctgagcattatcaagcctagttacacttccaaaacttaaatacagtacggactcaatttgctttgagttaagccaatttagccac 26186672  T
Q  195 tcttcctcttttccaagctcctctatgtgtcccctatt 232  Q
    |||||||||| | |||||||||| ||||||||||||||    
T  26186671 tcttcctcttctgcaagctcctccatgtgtcccctatt 26186634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 26191888 - 26191666
Alignment:
Q  1 cctcaaaatcttgaaggaaagtgttttcactctcatccctctcatatttccttacaacccagataaaattatgacctgaattttcaagaccgtgtgcaat 100  Q
    ||||||||||||| |||||| ||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  26191888 cctcaaaatcttgtaggaaactgttttcactctcatccatatcatttttccttacaacccagataaaattatgacctgaattttcaagcccatgtgcaat 26191789  T
Q  101 ttctacaatctgagcattatcaagcccagttagacttccaaaacttacatacaatacggactcattttcctttgagttaagccaatttagccactcttcc 200  Q
    |||||||| |||||||| |   |||| ||||| ||||||||| |||||||| | ||| |||||||||| |||||||||||||||||||||||||||| ||    
T  26191788 ttctacaagctgagcatgagttagcctagttaaacttccaaagcttacataaagtacagactcattttgctttgagttaagccaatttagccactctgcc 26191689  T
Q  201 tcttttccaagctcctctatgtg 223  Q
     ||||||||  ||||||||||||    
T  26191688 acttttccattctcctctatgtg 26191666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 42 - 239
Target Start/End: Complemental strand, 26179665 - 26179468
Alignment:
Q  42 tcatatttccttacaacccagataaaattatgacctgaattttcaagaccgtgtgcaatttctacaatctgagcattatcaagcccagttagacttccaa 141  Q
    ||||||||  ||| ||||||||||||||| |||||||| |||||||| ||||| ||||||||||||| ||||||||    || || |   || || ||||    
T  26179665 tcatatttttttataacccagataaaattttgacctgagttttcaagcccgtgcgcaatttctacaagctgagcatgcggaaacctaacaaggctaccaa 26179566  T
Q  142 aacttacatacaatacggactcattttcctttgagttaagccaatttagccactcttcctcttttccaagctcctctatgtgtcccctattggccttt 239  Q
    |||||||||| ||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||    
T  26179565 aacttacatataatacagactcattttgctttgagttaagccaatttagccattcttcctcttttccaagttcctctatgtgtccccttttggccttt 26179468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 56 - 187
Target Start/End: Complemental strand, 26251416 - 26251285
Alignment:
Q  56 aacccagataaaattatgacctgaattttcaagaccgtgtgcaatttctacaatctgagcattatcaagcccagttagacttccaaaacttacatacaat 155  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||| |  ||||| ||| || || ||||||||||||||||||    
T  26251416 aacccagataaaattatgacctgaattttcaagcccatgtgcaatttctacaagctgagcatgaggaagcctagtaaggctgccaaaacttacatacaat 26251317  T
Q  156 acggactcattttcctttgagttaagccaatt 187  Q
    || |||||||||| ||| ||||||||||||||    
T  26251316 actgactcattttgcttcgagttaagccaatt 26251285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 42 - 189
Target Start/End: Complemental strand, 26302391 - 26302244
Alignment:
Q  42 tcatatttccttacaacccagataaaattatgacctgaattttcaagaccgtgtgcaatttctacaatctgagcattatcaagcccagttagacttccaa 141  Q
    |||||||| | ||| ||||| |||||| ||||||||||||||||||| ||||||||||||||||||| |||||||| |  | ||| |   || || ||||    
T  26302391 tcatattttcgtacgacccaaataaaactatgacctgaattttcaagcccgtgtgcaatttctacaagctgagcatgaggatgccaaacaaggctgccaa 26302292  T
Q  142 aacttacatacaatacggactcattttcctttgagttaagccaattta 189  Q
    |||||||||||||||| |||||||||| ||||||||||||||||||||    
T  26302291 aacttacatacaatacagactcattttgctttgagttaagccaattta 26302244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 56 - 191
Target Start/End: Complemental strand, 26242968 - 26242833
Alignment:
Q  56 aacccagataaaattatgacctgaattttcaagaccgtgtgcaatttctacaatctgagcattatcaagcccagttagacttccaaaacttacatacaat 155  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||| |  || || |||  | || ||||||||||||||||||    
T  26242968 aacccagataaaattatgacctgaattttcaagcccgtgagcaatttctacaagctgagcatgaggaaacctagtctggctgccaaaacttacatacaat 26242869  T
Q  156 acggactcattttcctttgagttaagccaatttagc 191  Q
    || |||||||||| |||   ||||||||||||||||    
T  26242868 acagactcattttgcttcaggttaagccaatttagc 26242833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 56 - 191
Target Start/End: Complemental strand, 26298016 - 26297881
Alignment:
Q  56 aacccagataaaattatgacctgaattttcaagaccgtgtgcaatttctacaatctgagcattatcaagcccagttagacttccaaaacttacatacaat 155  Q
    ||||||||||||||||||||||||||||||||| || ||  |||||||||||| |||||||| |  ||||| ||| |  || ||||||||||||||||||    
T  26298016 aacccagataaaattatgacctgaattttcaagcccatgaacaatttctacaagctgagcataaggaagcctagtaaagctgccaaaacttacatacaat 26297917  T
Q  156 acggactcattttcctttgagttaagccaatttagc 191  Q
    || || ||||||||||| || |||||||||||||||    
T  26297916 acagattcattttccttcgaattaagccaatttagc 26297881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 56 - 156
Target Start/End: Complemental strand, 26278267 - 26278167
Alignment:
Q  56 aacccagataaaattatgacctgaattttcaagaccgtgtgcaatttctacaatctgagcattatcaagcccagttagacttccaaaacttacatacaat 155  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |  ||||| | | || || ||||| ||||||||||||    
T  26278267 aacccagataaaattatgacctgaattttcaagcccgtgtgcaatttctacaagctgagcatgaggaagcctaataaggctgccaaagcttacatacaat 26278168  T
Q  156 a 156  Q
    |    
T  26278167 a 26278167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 54 - 210
Target Start/End: Complemental strand, 26204455 - 26204299
Alignment:
Q  54 acaacccagataaaattatgacctgaattttcaagaccgtgtgcaatttctacaatctgagcattatcaagcccagttagacttccaaaacttacataca 153  Q
    |||||||| || ||||||||||| |||||||||||||| || || |||||  |||||||  ||| |  ||||| ||| || |||||||||||||||||||    
T  26204455 acaacccaaatgaaattatgaccagaattttcaagaccatgagctatttcagcaatctgttcatgagaaagcctagtaaggcttccaaaacttacataca 26204356  T
Q  154 atacggactcattttcctttgagttaagccaatttagccactcttcctcttttccaa 210  Q
    | || ||||| |||||||| || ||||||||||||| | | ||||  ||||||||||    
T  26204355 acacagactcgttttccttagaattaagccaatttaccaattcttgatcttttccaa 26204299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 54 - 210
Target Start/End: Complemental strand, 26224093 - 26223937
Alignment:
Q  54 acaacccagataaaattatgacctgaattttcaagaccgtgtgcaatttctacaatctgagcattatcaagcccagttagacttccaaaacttacataca 153  Q
    |||||||| || ||||||||||| |||||||||||||| || || |||||  |||||||  ||| |  ||||| ||| || |||||||||||||||||||    
T  26224093 acaacccaaatgaaattatgaccagaattttcaagaccatgagctatttcagcaatctgttcatgagaaagcctagtaaggcttccaaaacttacataca 26223994  T
Q  154 atacggactcattttcctttgagttaagccaatttagccactcttcctcttttccaa 210  Q
    | || ||||| |||||||| || ||||||||||||| | | ||||  ||||||||||    
T  26223993 acacagactcgttttccttagaattaagccaatttaccaattcttgatcttttccaa 26223937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 47 - 189
Target Start/End: Complemental strand, 26260449 - 26260307
Alignment:
Q  47 tttccttacaacccagataaaattatgacctgaattttcaagaccgtgtgcaatttctacaatctgagcattatcaagcccagttagacttccaaaactt 146  Q
    |||||| |||||||| || ||||||||||||||||||||||| || || || ||||| |||| |||||||| |  ||||| ||| |  ||||||||||||    
T  26260449 tttcctaacaacccaaatgaaattatgacctgaattttcaagtccatgagctatttcaacaacctgagcataagaaagcctagtcaagcttccaaaactt 26260350  T
Q  147 acatacaatacggactcattttcctttgagttaagccaattta 189  Q
    |||||||| || || |||||    || ||||||||||||||||    
T  26260349 acatacaacacagaatcattagggttagagttaagccaattta 26260307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 26227549 - 26227484
Alignment:
Q  47 tttccttacaacccagataaaattatgacctgaattttcaagaccgtgtgcaatttctacaatctg 112  Q
    |||||| |||||||| || |||||||||||||||||||||||||| || || ||||||||||||||    
T  26227549 tttcctaacaacccaaatgaaattatgacctgaattttcaagaccatgagctatttctacaatctg 26227484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 117
Target Start/End: Complemental strand, 26207988 - 26207918
Alignment:
Q  47 tttccttacaacccagataaaattatgacctgaattttcaagaccgtgtgcaatttctacaatctgagcat 117  Q
    |||||| |||||||| || ||||||||||| |||||||| ||||| || || |||||||||||||||||||    
T  26207988 tttcctaacaacccaaatgaaattatgaccggaattttccagaccatgagctatttctacaatctgagcat 26207918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 42 - 191
Target Start/End: Complemental strand, 44903835 - 44903686
Alignment:
Q  42 tcatatttccttacaacccagataaaattatgacctgaattttcaagaccgtgtgcaatttctacaatctgagcattatcaagcccagttagacttccaa 141  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||| |||||||| |  ||||  ||| || |||||||    
T  44903835 tcatttttccttacaacccagataaaattatgacctgacttttcaagcccatgtgcaatttctacaagctgagcatgaaaaagcttagtaaggcttccaa 44903736  T
Q  142 aacttacatacaatacggactcattttcctttgagttaagccaatttagc 191  Q
    ||||||||||||| || |||||||||| ||||||||||||||||||||||    
T  44903735 aacttacatacaacacagactcattttgctttgagttaagccaatttagc 44903686  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 103
Target Start/End: Original strand, 5995053 - 5995102
Alignment:
Q  54 acaacccagataaaattatgacctgaattttcaagaccgtgtgcaatttc 103  Q
    |||||||| || |||||||||||||||||||||||  | |||||||||||    
T  5995053 acaacccaaatgaaattatgacctgaattttcaagtgcatgtgcaatttc 5995102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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