View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0942_high_107 (Length: 263)
Name: NF0942_high_107
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0942_high_107 |
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Alignment Details
Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 94 - 234
Target Start/End: Original strand, 37433596 - 37433736
Alignment:
| Q |
94 |
ataaactactaaataaatgaactgacgttattgaagcagtcataaatccgataatatggtactcaccatatctgtcctatagggacattcccaactaacc |
193 |
Q |
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| T |
37433596 |
ataaattactaaataaatgaactgacgttattgaagcagtcagaaatccaataatatggtactcaccatatctgtcctatagagacattcccaactaacc |
37433695 |
T |
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| Q |
194 |
tatttaaaattagactataaactactattaagtgcaaaaag |
234 |
Q |
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| T |
37433696 |
tattttaaattagactataaactagtattaagtgcaaaaag |
37433736 |
T |
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Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 37433399 - 37433463
Alignment:
| Q |
13 |
gatgcattgaccactttaagtcttgtataagaactcacgttttgtctttagttaaaagacgtctc |
77 |
Q |
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|||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||| |
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| T |
37433399 |
gatgcattgaccactttaagtcttgtataagacctcaagttttgtccttagttaaaagacgtctc |
37433463 |
T |
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