View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0942_high_109 (Length: 260)
Name: NF0942_high_109
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0942_high_109 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 30 - 260
Target Start/End: Original strand, 10322814 - 10323044
Alignment:
| Q |
30 |
gctagacataattcaaaattccagatttcgtgcctattcacaaattttaaaggtataaaaatgtcaaaggcctgcaatattttcaagggcacatcttgat |
129 |
Q |
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| T |
10322814 |
gctagacataattcaaaattccagatttcgtgcctattcacaaattttaaaggtataaaaatgtcaaaggcctacaatattttcaagggcacatcttgat |
10322913 |
T |
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| Q |
130 |
gatttagtccgaagataatactagttttacataagcataaacctgcatgttaaaaaagaaagttgaatactatttaatgaaccgccaatttagtttttaa |
229 |
Q |
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| T |
10322914 |
aatttagtccgaagataatactagttttacataagcataaacctgcatgttaaaaaagaaagttgaatactatttaatgaaccgccaatttagtttttaa |
10323013 |
T |
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| Q |
230 |
actatcacattctcaccagttagtctatata |
260 |
Q |
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| T |
10323014 |
actatcacattctcaccaattagtctatata |
10323044 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 243
Target Start/End: Original strand, 41259770 - 41259798
Alignment:
| Q |
215 |
caatttagtttttaaactatcacattctc |
243 |
Q |
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| T |
41259770 |
caatttagtttttaaactatcacattctc |
41259798 |
T |
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