View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0942_high_11 (Length: 575)

Name: NF0942_high_11
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0942_high_11
NF0942_high_11
[»] chr7 (8 HSPs)
chr7 (96-563)||(39457871-39458338)
chr7 (274-563)||(39437114-39437400)
chr7 (274-563)||(39463401-39463687)
chr7 (274-557)||(39424091-39424371)
chr7 (170-243)||(39423980-39424049)
chr7 (170-243)||(39437000-39437069)
chr7 (324-431)||(47369008-47369115)
chr7 (368-449)||(19981470-19981551)
[»] chr4 (1 HSPs)
chr4 (332-453)||(38490494-38490615)
[»] chr1 (1 HSPs)
chr1 (332-466)||(43098352-43098486)
[»] chr3 (5 HSPs)
chr3 (332-407)||(48445119-48445194)
chr3 (377-447)||(7176148-7176218)
chr3 (332-456)||(13465547-13465671)
chr3 (332-448)||(27816246-27816362)
chr3 (342-456)||(14350675-14350789)


Alignment Details
Target: chr7 (Bit Score: 428; Significance: 0; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 96 - 563
Target Start/End: Complemental strand, 39458338 - 39457871
Alignment:
Q  96 atagatgcaatctataatctattatccttttgtgttttatttattccnnnnnnnnaaaagaacccttgtatgttttattaaacaaaatatactagatttt 195  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||    
T  39458338 atagatgcaatctataatctattatctttttgtgttttatttattccttttttttaaaagaacccttgtatgttttattaaacaaaatatactagatttt 39458239  T
Q  196 ggctcaaaatatattttaggtttagatcgatataaataatagatgtatcgtatgcatcttcctcaccttgccaaagatgatgtcgtctccctctcttaaa 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39458238 ggctcaaaatatattttaggtttagatcgatataaataatagatgtatcgtatgcatcttcctcaccttgccaaagatgatgtcgtctccctctcttaaa 39458139  T
Q  296 aagagaaggatgaaaaaatcttcactgccggtagacagaattagcgacttgccggattcaattctctttcaaatactttattttcttccaaccaaacttg 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  39458138 aagagaaggatgaaaaaatcttcactgccggtagacagaattagcgacttgccggattcaattctctttgaaatactttattttcttccaaccaaacttg 39458039  T
Q  396 ctgtaaccacaagcgtcctctcaaagagatggaaacatgtgtggctctcagttctcgctcttgactttgactccggaggcatcgaaacttccgatctctt 495  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  39458038 ttgtaaccacaagcgtcctctcaaagagatggaaacatgtgtggctctcagttctcgctctcgactttgactccggaggcatcgaaacttccgatctctt 39457939  T
Q  496 tcttgatggagtgcactcaacgatgtaccggcgagacatcacactaccaatccattcctttcgcttca 563  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39457938 tcttgatggagtgcactcaacgatgtaccggcgagacatcacactaccaatccattcctttcgcttca 39457871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 274 - 563
Target Start/End: Original strand, 39437114 - 39437400
Alignment:
Q  274 gatgtcgtctccctctcttaaaaagagaaggatgaaaaaatcttcactgccggtagacagaattagcgacttgccggattcaattctctttcaaatactt 373  Q
    |||||||||| |||| | ||||||||||||| ||| |||||||||   |   ||||| || ||||||||| | |||||||||||||| | ||| |||||     
T  39437114 gatgtcgtcttcctcacataaaaagagaaggttgagaaaatcttccaag---gtagataggattagcgacctaccggattcaattctgtgtcacatactc 39437210  T
Q  374 tattttcttccaaccaaacttgctgtaaccacaagcgtcctctcaaagagatggaaacatgtgtggctctcagttctcgctcttgactttgactccggag 473  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||   ||||||| ||||||||| | || ||||||||| |  | |    
T  39437211 tattttcttccaaccaaacttgctgcaaccacaagtgtcctctcaaagagatggaaacgattgtggctatcagttctctccctcgactttgaccctagcg 39437310  T
Q  474 gcatcgaaacttccgatctctttcttgatggagtgcactcaacgatgtaccggcgagacatcacactaccaatccattcctttcgcttca 563  Q
    || || ||||||| |||||||||||  ||| |||  ||||||| |||||||| ||||| || ||||||||||||||||| ||||||||||    
T  39437311 gcttcaaaacttctgatctctttctccatgtagtttactcaaccatgtaccgtcgagaaattacactaccaatccattcgtttcgcttca 39437400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 274 - 563
Target Start/End: Complemental strand, 39463687 - 39463401
Alignment:
Q  274 gatgtcgtctccctctcttaaaaagagaaggatgaaaaaatcttcactgccggtagacagaattagcgacttgccggattcaattctctttcaaatactt 373  Q
    |||||||| | |||| | ||||||||||||| ||| |||||||||   |   ||||| || ||||||||||||||||| |||||||||   || |||||     
T  39463687 gatgtcgtattcctcacataaaaagagaaggttgagaaaatcttccaag---gtagataggattagcgacttgccggactcaattctcagccacatactc 39463591  T
Q  374 tattttcttccaaccaaacttgctgtaaccacaagcgtcctctcaaagagatggaaacatgtgtggctctcagttctcgctcttgactttgactccggag 473  Q
    ||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||   |||||||||| |||||  |||| |||||||||||| | |    
T  39463590 tattttcttccaaccaaacttgctgcaacgacaagcgttctctcaaagagatggaaacgattgtggctctccgttctttctctcgactttgactccagcg 39463491  T
Q  474 gcatcgaaacttccgatctctttcttgatggagtgcactcaacgatgtaccggcgagacatcacactaccaatccattcctttcgcttca 563  Q
    || || ||||||  || ||||||||   || |||| |||||||||||||| | ||||| || ||||||||||||||||| ||||||||||    
T  39463490 gcttcaaaacttttgacctctttctccgtgtagtgtactcaacgatgtactgtcgagaaattacactaccaatccattcgtttcgcttca 39463401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 274 - 557
Target Start/End: Original strand, 39424091 - 39424371
Alignment:
Q  274 gatgtcgtctccctctcttaaaaagagaaggatgaaaaaatcttcactgccggtagacagaattagcgacttgccggattcaattctctttcaaatactt 373  Q
    |||||||||| |||| | ||||||||||||| ||| |||||||||   |   ||||| || || |||||| |||||||||||||||| | ||| |||||     
T  39424091 gatgtcgtcttcctcacataaaaagagaaggttgagaaaatcttccaag---gtagataggataagcgacctgccggattcaattctgtgtcacatactc 39424187  T
Q  374 tattttcttccaaccaaacttgctgtaaccacaagcgtcctctcaaagagatggaaacatgtgtggctctcagttctcgctcttgactttgactccggag 473  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||   ||||||| || ||||| ||| | |||||||||||| |      
T  39424188 tattttcttccaaccaaacttgctgcaaccacaagtgtcctctcaaaaagatggaaactattgtggctttcggttctagctttcgactttgactccagcc 39424287  T
Q  474 gcatcgaaacttccgatctctttcttgatggagtgcactcaacgatgtaccggcgagacatcacactaccaatccattcctttc 557  Q
    || || ||||||| ||||||||||||  ||  ||| | |||||||| ||||||||||| ||| |||||||||||||||| ||||    
T  39424288 gcttcaaaacttctgatctctttcttcgtgtggtgtattcaacgatataccggcgagatatcgcactaccaatccattcgtttc 39424371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 170 - 243
Target Start/End: Original strand, 39423980 - 39424049
Alignment:
Q  170 ttattaaacaaaatatactagattttggctcaaaatatattttaggtttagatcgatataaataatagatgtat 243  Q
    |||||||||||||||||| ||||||| ||| |||||||||||||||||||    | ||||||||||||||||||    
T  39423980 ttattaaacaaaatatacgagattttagctgaaaatatattttaggttta----gctataaataatagatgtat 39424049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 170 - 243
Target Start/End: Original strand, 39437000 - 39437069
Alignment:
Q  170 ttattaaacaaaatatactagattttggctcaaaatatattttaggtttagatcgatataaataatagatgtat 243  Q
    ||||| |||||||| ||||||||||| ||||||||||||||||||||||||||    |||||||||||| ||||    
T  39437000 ttattgaacaaaatttactagattttagctcaaaatatattttaggtttagat----ataaataatagacgtat 39437069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 324 - 431
Target Start/End: Complemental strand, 47369115 - 47369008
Alignment:
Q  324 cggtagacagaattagcgacttgccggattcaattctctttcaaatactttattttcttccaaccaaacttgctgtaaccacaagcgtcctctcaaagag 423  Q
    ||||||| ||||| |||||| |||| ||||| || |||| ||| || || |  ||||  ||||||||| | |||| |||||||||||| |||||||||||    
T  47369115 cggtagatagaatcagcgacatgcctgattcgatactctgtcatattctctcctttcacccaaccaaattcgctgcaaccacaagcgttctctcaaagag 47369016  T
Q  424 atggaaac 431  Q
    ||||||||    
T  47369015 atggaaac 47369008  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 368 - 449
Target Start/End: Complemental strand, 19981551 - 19981470
Alignment:
Q  368 atactttattttcttccaaccaaacttgctgtaaccacaagcgtcctctcaaagagatggaaacatgtgtggctctcagttc 449  Q
    |||||||  ||||| ||||||||||| ||||  | | |||||||||||||||||||||||||||   | |||||||||||||    
T  19981551 atactttcatttctcccaaccaaactcgctgcgatcccaagcgtcctctcaaagagatggaaaccattatggctctcagttc 19981470  T

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Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 332 - 453
Target Start/End: Complemental strand, 38490615 - 38490494
Alignment:
Q  332 agaattagcgacttgccggattcaattctctttcaaatactttattttcttccaaccaaacttgctgtaaccacaagcgtcctctcaaagagatggaaac 431  Q
    ||||||||||||||||| ||||| || |||| ||| || || | |||||| |||||||| |||||| | | ||||||| ||||||||||||||||||||     
T  38490615 agaattagcgacttgcctgattcgatactctgtcacattctctcttttctcccaaccaatcttgctttcatcacaagcttcctctcaaagagatggaaat 38490516  T
Q  432 atgtgtggctctcagttctcgc 453  Q
      |||||||||||||| |||||    
T  38490515 cggtgtggctctcagtcctcgc 38490494  T

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Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 332 - 466
Target Start/End: Original strand, 43098352 - 43098486
Alignment:
Q  332 agaattagcgacttgccggattcaattctctttcaaatactttattttcttccaaccaaacttgctgtaaccacaagcgtcctctcaaagagatggaaac 431  Q
    ||||||||| | ||||| ||||||||||| | ||| || || | |||  | |||||||||||||| | || |||||||||||||||||| |||||| |||    
T  43098352 agaattagctatttgccagattcaattctgtgtcacattctctctttcgtcccaaccaaacttgcggcaatcacaagcgtcctctcaaaaagatgggaac 43098451  T
Q  432 atgtgtggctctcagttctcgctcttgactttgac 466  Q
    | || |||||||||||||| |||||  ||||||||    
T  43098452 aggtatggctctcagttcttgctctctactttgac 43098486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 332 - 407
Target Start/End: Original strand, 48445119 - 48445194
Alignment:
Q  332 agaattagcgacttgccggattcaattctctttcaaatactttattttcttccaaccaaacttgctgtaaccacaa 407  Q
    |||||||||||| ||||||||||||| |||  ||| || || | |||||| |||||||||||||||||||||||||    
T  48445119 agaattagcgacatgccggattcaatactcagtcatattctctcttttctcccaaccaaacttgctgtaaccacaa 48445194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 377 - 447
Target Start/End: Complemental strand, 7176218 - 7176148
Alignment:
Q  377 tttcttccaaccaaacttgctgtaaccacaagcgtcctctcaaagagatggaaacatgtgtggctctcagt 447  Q
    |||||||| || ||||| |||| |||||||||||||||||||||||||||||||   |||||| |||||||    
T  7176218 tttcttccgactaaactagctgcaaccacaagcgtcctctcaaagagatggaaatcggtgtggatctcagt 7176148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 332 - 456
Target Start/End: Complemental strand, 13465671 - 13465547
Alignment:
Q  332 agaattagcgacttgccggattcaattctctttcaaatactttattttcttccaaccaaacttgctgtaaccacaagcgtcctctcaaagagatggaaac 431  Q
    ||||||||  ||||||||||||||||||| | ||| || || | |||| |  | |||||||  |||| ||  |||||||||||||||||| |||||| ||    
T  13465671 agaattagtaacttgccggattcaattctgtgtcacattctctcttttatctcgaccaaacaagctgcaattacaagcgtcctctcaaagcgatggagac 13465572  T
Q  432 atgtgtggctctcagttctcgctct 456  Q
       ||||||||||||||||||||||    
T  13465571 cattgtggctctcagttctcgctct 13465547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 332 - 448
Target Start/End: Complemental strand, 27816362 - 27816246
Alignment:
Q  332 agaattagcgacttgccggattcaattctctttcaaatactttattttcttccaaccaaacttgctgtaaccacaagcgtcctctcaaagagatggaaac 431  Q
    ||||||||||| || || |||||||| |||  ||| || || | |||  |||||||||||||  |||  ||||||||| |||||||||||||||||| |     
T  27816362 agaattagcgagttacctgattcaatactcagtcacatcctctctttaattccaaccaaactcactgcgaccacaagcatcctctcaaagagatggagat 27816263  T
Q  432 atgtgtggctctcagtt 448  Q
      |||||||||||||||    
T  27816262 cggtgtggctctcagtt 27816246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 342 - 456
Target Start/End: Complemental strand, 14350789 - 14350675
Alignment:
Q  342 acttgccggattcaattctctttcaaatactttattttcttccaaccaaacttgctgtaaccacaagcgtcctctcaaagagatggaaacatgtgtggct 441  Q
    ||||||||||||||||||| | ||| || || | |||| |  | |||||||  |||| ||  |||||||||||||||||| |||||| ||   ||||||     
T  14350789 acttgccggattcaattctgtgtcacattctctcttttatctcgaccaaacaagctgcaattacaagcgtcctctcaaagcgatggagaccattgtggcg 14350690  T
Q  442 ctcagttctcgctct 456  Q
    |||||||||||||||    
T  14350689 ctcagttctcgctct 14350675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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