View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0942_high_113 (Length: 251)
Name: NF0942_high_113
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0942_high_113 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 6e-95; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 18814341 - 18814097
Alignment:
| Q |
1 |
ttaggttatctcgcacagcctgtccaaattacttgtggttgcaagttactcaattcccaaccatgcccatgaagtctaaccaaaaagcaagattgagtat |
100 |
Q |
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| T |
18814341 |
ttaggttacctcgcacagcctgtccaaattacttgtggttgcaagttactcaattcccaaccatgcccatgaagtctaaccaaaaagcaagattgagtat |
18814242 |
T |
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| Q |
101 |
ttgacgcaaagttaagacgcagcttcattgaaacgtgtgatttaatgccaaattgccatctcaaaagcatgcaagacctttgnnnnnnnnnnnnnnnttt |
200 |
Q |
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| T |
18814241 |
ttgatgcaaagttaagacgcagcttcattgaaacgtgtgatttaatgccaaattgccatctcaaaagcatgcaagacctttgaaaaaaaataaaaaaatt |
18814142 |
T |
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| Q |
201 |
cgga-ccaaatcattggtattattacttagttctccttcttttct |
244 |
Q |
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| T |
18814141 |
cagagccaaatcattggtattattacttagttctccttcttttct |
18814097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 18813600 - 18813782
Alignment:
| Q |
1 |
ttaggttatctcgcacagcctgtccaaattacttgtggttgcaagttactcaattcccaaccatgcccatg-aagtctaaccaaaaagcaagattgagta |
99 |
Q |
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| T |
18813600 |
ttaggttccctcgcacagcccgtccaaattacttgtggttgcaaattacttatttcccaaccatgcccatgaaagtctaaccaaaaagtaagattgagtt |
18813699 |
T |
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| Q |
100 |
tttgacgcaaagttaagacgcagcttcattgaaacgtgtgatttaatgccaaattgccatctcaaaagcatgcaagacctttg |
182 |
Q |
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| T |
18813700 |
tttgatgcaaacttaagacgcaaattcgacgaaacatgtgatttaacgtcaaaatgccaccttaaatgcatgcaaaacctttg |
18813782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 18791666 - 18791738
Alignment:
| Q |
1 |
ttaggttatctcgcacagcctgtccaaattacttgtggttgcaagttactcaattcccaaccatgcccatgaa |
73 |
Q |
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| T |
18791666 |
ttaggttacctcgcacaacctgtccaaattacctgtggttgcaactcactcaattccctaccatacccatgaa |
18791738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 18791801 - 18791745
Alignment:
| Q |
17 |
agcctgtccaaattacttgtggttgcaagttactcaattcccaaccatgcccatgaa |
73 |
Q |
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| T |
18791801 |
agcctgtccaaattatttgtcgttgcaaatcactcaattcccaaccaagtccatgaa |
18791745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 182
Target Start/End: Original strand, 11327935 - 11328105
Alignment:
| Q |
13 |
gcacagcctgtccaaattacttgtggttgcaagttactcaattcccaaccatgcccatg-aagtctaaccaaaa-agcaagattgagtatttgacgcaaa |
110 |
Q |
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| T |
11327935 |
gcacagtctgtccaaattacttgtggttgtatgaaacttcattccctgccatgcccatgaaaatctaagaaaaacagtaagagtgggtatttgatgcaaa |
11328034 |
T |
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| Q |
111 |
gttaagacgcagcttcattgaaacgtgtgatttaatgccaaattgccatctcaaaagcatgcaagacctttg |
182 |
Q |
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| T |
11328035 |
gttaagatgcaacttcgttgaaacatgtg-tttaacatcaaaatgccacctcaaatgcatgcaaaacctttg |
11328105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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