View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0942_high_130 (Length: 228)
Name: NF0942_high_130
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0942_high_130 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 6e-98; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 18814320 - 18814535
Alignment:
| Q |
1 |
caggctgtgcgagataacctaactgcttgaaacatgttaatatatgaaaaacagttctaaatcacagtatttaatctagctaggtaaatttcaaaataca |
100 |
Q |
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| T |
18814320 |
caggctgtgcgaggtaacctaactgcttgaaacatgttaatatatgaaaaacagttctaaatcacagtaattaatctagctaggtaaatttcaaaataca |
18814419 |
T |
|
| Q |
101 |
gtacaaggttttacatgtcagaatatcttatttagtttatactttgtacattttaattttgtatttttccaaaaggaattatattaaatagagaagtaac |
200 |
Q |
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| T |
18814420 |
gtacaaggttttacatgtcagaatatctta-----tttatactttgtacatgttaattttgtatttttccaaaaggaattatattaaatagagaagtaac |
18814514 |
T |
|
| Q |
201 |
aacgtaagcatagtggcacat |
221 |
Q |
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|||||||||||| ||||||| |
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| T |
18814515 |
aacgtaagcataacggcacat |
18814535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 16 - 169
Target Start/End: Original strand, 18791811 - 18791963
Alignment:
| Q |
16 |
aacctaactgcttgaaacatgttaatatatgaaaaacagttctaaatcacagtatttaatctagctaggtaaatttcaaaatacagtacaaggttttaca |
115 |
Q |
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||||||||||||| ||| |||||| |||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||| ||||||||| |
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| T |
18791811 |
aacctaactgcttaaaa-atgttattatatgaaaaacagttctaaatcacaataattaatctagctaggtaaatttccaaatacagtgagtggttttaca |
18791909 |
T |
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| Q |
116 |
tgtcagaatatcttatttagtttatactttgtacattttaattttgtatttttc |
169 |
Q |
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| T |
18791910 |
tgtcagaatatcttatgtagtttatactttgtacatgttaattttgtatttttc |
18791963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 3 - 220
Target Start/End: Complemental strand, 18813619 - 18813400
Alignment:
| Q |
3 |
ggctgtgcgagataacctaactgcttgaaacatgttaatatatgaaaaacagttctaaatcacagtatttaatctagctaggtaaatttcaaaatacagt |
102 |
Q |
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| T |
18813619 |
ggctgtgcgagggaacctaactgcttgaaacatgttattatatgaaaatgagttctagattacaataactaatttagctagataaatttcaaaatacagt |
18813520 |
T |
|
| Q |
103 |
acaaggtt----ttacatgtcagaatatcttatttagtttatactttgtacattttaattttgtatttttccaaaaggaattatattaaatagagaagta |
198 |
Q |
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| T |
18813519 |
aggtggttttacttacatatcagaaagtcttttgtagtttgtactttgtacatgttaatttggt-ttttgccaaaaggaagtatattaaatagagaagtg |
18813421 |
T |
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| Q |
199 |
acaacgtaagcatagtggcaca |
220 |
Q |
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| T |
18813420 |
agaacgt-agcatattggcaca |
18813400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 18791687 - 18791496
Alignment:
| Q |
1 |
caggctgtgcgagataacctaactgcttgaaacatgttaatatatgaaaaacagttctaaatcacagtatttaatctagctaggtaaatttcaaaataca |
100 |
Q |
| |
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|||| |||||||| ||||||||||||||||||||||||| |||||| ||| ||||||| || ||| || |||||||||||||||||||||||||||||| |
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| T |
18791687 |
caggttgtgcgaggtaacctaactgcttgaaacatgttattatatg--aaagagttctagattacaataattaatctagctaggtaaatttcaaaataca |
18791590 |
T |
|
| Q |
101 |
gtacaaggtt----ttacatgtcagaatatcttatttagtttatactttgtacattttaattttgtatttttccaaaaggaattatattaaatag |
191 |
Q |
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||| |||| |||||| ||| || |||| | |||||| |||||||||||| ||||||| || || |||||||||||| |||||||||||| |
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| T |
18791589 |
gtaggtggttttacttacatatcataaagtcttttgtagtttgtactttgtacatgttaatttggt-ttattccaaaaggaagtatattaaatag |
18791496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 131; Significance: 4e-68; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 11328841 - 11329057
Alignment:
| Q |
1 |
caggctgtgcgagataacctaactgcttgaaacatgttaatatatgaaaaacagttctaaatcacagtatttaatctagctaggtaaatttcaaaataca |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||| |||| ||||||||||||||| |||||||| |||||||| ||||||||||| || |||| |
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| T |
11328841 |
caggctgtgcgagggaacctaactgcttgaaatatgttattatacgaaaaacagttctaa-tcacagtaattaatcta---aggtaaatttccaattaca |
11328936 |
T |
|
| Q |
101 |
gtacaaggttttacatgtcagaatatcttatttagtttatactttgtacattttaattttgtatttttccaaaaggaattatattaaatagagaagtaac |
200 |
Q |
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||| ||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
11328937 |
gtaagtggttttacatgtcagaatatcttctgcagtttatactttgtagattttaattttgtatttttccaaaaggaattatattaaataaagaagtaac |
11329036 |
T |
|
| Q |
201 |
aacgtaagcatagtggcacat |
221 |
Q |
| |
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|| |||||||||||||||||| |
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| T |
11329037 |
aatgtaagcatagtggcacat |
11329057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 11327929 - 11327847
Alignment:
| Q |
16 |
aacctaactgcttgaaacatgttaatatatgaaaaacagttctaaatcacagtatttaatctagctaggtaaatttcaaaata |
98 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||| ||||||| || ||| || |||||||| ||||||||||||||||||| |
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| T |
11327929 |
aacctaactgcttgaaacatgttattatatgaaaaagagttctagattacaataattaatctatctaggtaaatttcaaaata |
11327847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 203
Target Start/End: Original strand, 35869250 - 35869311
Alignment:
| Q |
141 |
actttgtacattttaattttgtatttttccaaaaggaattatattaaatagagaagtaacaac |
203 |
Q |
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||||||||||| |||||||||| |||| |||||||||| ||||| |||| ||||||| ||||| |
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| T |
35869250 |
actttgtacatgttaattttgt-ttttgccaaaaggaagtatatcaaatggagaagtgacaac |
35869311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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