View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0942_high_134 (Length: 225)

Name: NF0942_high_134
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0942_high_134
NF0942_high_134
[»] chr8 (1 HSPs)
chr8 (134-171)||(44680335-44680372)


Alignment Details
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 171
Target Start/End: Complemental strand, 44680372 - 44680335
Alignment:
134 atgcttggaacatttctgctaaggtatctagagatgga 171  Q
    ||||||||||||||||||||||||||||||||||||||    
44680372 atgcttggaacatttctgctaaggtatctagagatgga 44680335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University