View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0942_high_135 (Length: 224)
Name: NF0942_high_135
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0942_high_135 |
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Alignment Details
Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 11 - 133
Target Start/End: Original strand, 7142482 - 7142604
Alignment:
| Q |
11 |
caaacaacaatttaagttgtttgcttccagaagatattggtatattccttcctagcgttgactatctgaacttttcatggaatagctttgaaggaaatat |
110 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||| |
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| T |
7142482 |
caaacaacaatttaagtggtttgcttccagaagatattggtatattccttcctagtgttgactatctgaacttttcattgaatagctttcaaggaaatat |
7142581 |
T |
|
| Q |
111 |
accttcatcaattggtatgatga |
133 |
Q |
| |
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||||| ||||||||||||||||| |
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| T |
7142582 |
accttaatcaattggtatgatga |
7142604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 11 - 133
Target Start/End: Original strand, 5182545 - 5182667
Alignment:
| Q |
11 |
caaacaacaatttaagttgtttgcttccagaagatattggtatattccttcctagcgttgactatctgaacttttcatggaatagctttgaaggaaatat |
110 |
Q |
| |
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||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||| ||| | ||| |||||||||||||||||||||||||||||||||| |
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| T |
5182545 |
caaacaacaatttgagtggtttgcttccaaaagatattggtatattccttcctagtgttaagtatttgaacttttcatggaatagctttgaaggaaatat |
5182644 |
T |
|
| Q |
111 |
accttcatcaattggtatgatga |
133 |
Q |
| |
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||||||||||||||||| ||||| |
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| T |
5182645 |
accttcatcaattggtaagatga |
5182667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 11 - 133
Target Start/End: Original strand, 5195945 - 5196067
Alignment:
| Q |
11 |
caaacaacaatttaagttgtttgcttccagaagatattggtatattccttcctagcgttgactatctgaacttttcatggaatagctttgaaggaaatat |
110 |
Q |
| |
|
||||||||||||| ||| ||||||||||| ||||||| |||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
5195945 |
caaacaacaatttgagtggtttgcttccaaaagatatcggtatattccttcctaatgttacctatttgaacttttcatggaatagctttgaaggaaatat |
5196044 |
T |
|
| Q |
111 |
accttcatcaattggtatgatga |
133 |
Q |
| |
|
||||||||||||||||| ||||| |
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| T |
5196045 |
accttcatcaattggtaagatga |
5196067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 133
Target Start/End: Complemental strand, 4842312 - 4842190
Alignment:
| Q |
11 |
caaacaacaatttaagttgtttgcttccagaagatattggtatattccttcctagcgttgactatctgaacttttcatggaatagctttgaaggaaatat |
110 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||| |||| |||| ||||||| |||| ||||||||||||||| |
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| T |
4842312 |
caaacaacaattttagtggtttgcttccagaagatattggtatattccttcctagtgttacctatatgaatttttcatcaaataactttgaaggaaatat |
4842213 |
T |
|
| Q |
111 |
accttcatcaattggtatgatga |
133 |
Q |
| |
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||||||||||||| ||| ||||| |
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| T |
4842212 |
accttcatcaatttgtaagatga |
4842190 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 11 - 111
Target Start/End: Complemental strand, 4856786 - 4856686
Alignment:
| Q |
11 |
caaacaacaatttaagttgtttgcttccagaagatattggtatattccttcctagcgttgactatctgaacttttcatggaatagctttgaaggaaatat |
110 |
Q |
| |
|
||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||| ||| |||| ||||| |||||||||||||||||||||||||||| |
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| T |
4856786 |
caaacaacaatttgagtggtttgcttccaaaagatattggtatattccttcctagtgttacctatttgaacatttcatggaatagctttgaaggaaatat |
4856687 |
T |
|
| Q |
111 |
a |
111 |
Q |
| |
|
| |
|
|
| T |
4856686 |
a |
4856686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 15 - 133
Target Start/End: Original strand, 5214106 - 5214224
Alignment:
| Q |
15 |
caacaatttaagttgtttgcttccagaagatattggtatattccttcctagcgttgactatctgaacttttcatggaatagctttgaaggaaatatacct |
114 |
Q |
| |
|
||||| ||||||| |||| |||||| ||||||||||||||||||||||||| ||| |||| |||| ||||||| |||| ||||||||||||||||||| |
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| T |
5214106 |
caacagtttaagtggttttcttccaaaagatattggtatattccttcctagtgttacctatatgaatttttcatcaaataactttgaaggaaatatacct |
5214205 |
T |
|
| Q |
115 |
tcatcaattggtatgatga |
133 |
Q |
| |
|
||||||||||||| ||||| |
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|
| T |
5214206 |
tcatcaattggtaagatga |
5214224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 11 - 133
Target Start/End: Original strand, 5173216 - 5173332
Alignment:
| Q |
11 |
caaacaacaatttaagttgtttgcttccagaagatattggtatattccttcctagcgttgactatctgaacttttcatggaatagctttgaaggaaatat |
110 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||| ||||||||| || || |||| |||||||||||||||||||||||||||||||||| |
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| T |
5173216 |
caaacaacaattttagtggtttgcttccagaagatat------attccttccaagtattacctatttgaacttttcatggaatagctttgaaggaaatat |
5173309 |
T |
|
| Q |
111 |
accttcatcaattggtatgatga |
133 |
Q |
| |
|
||||||||||||||||| ||||| |
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|
| T |
5173310 |
accttcatcaattggtaagatga |
5173332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 77 - 127
Target Start/End: Original strand, 5160366 - 5160416
Alignment:
| Q |
77 |
tgaacttttcatggaatagctttgaaggaaatataccttcatcaattggta |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5160366 |
tgaacttttcatggaatagctttgaaggaaatataccttcatcaattggta |
5160416 |
T |
|
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