View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0942_high_138 (Length: 221)
Name: NF0942_high_138
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0942_high_138 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 2830192 - 2830325
Alignment:
| Q |
1 |
tgaataatataccataaataatggaatagctacatcctttaacacactaacatcagccacatgtgatccttaaccatagcacagacgaactgcaaaaatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
2830192 |
tgaataatataccataaataatggaatagctacatccttta-cgcactaacatcagccacatgtgatccttaaccatagcacagactaactgcaaaaatg |
2830290 |
T |
|
| Q |
101 |
taggtcaagtcaagctatgtttatctacctactct |
135 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |
|
|
| T |
2830291 |
taggtcaagtcaagctatgtttctctacctactct |
2830325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University