View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0942_high_34 (Length: 434)
Name: NF0942_high_34
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0942_high_34 |
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Alignment Details
Target: chr8 (Bit Score: 418; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Original strand, 3056960 - 3057385
Alignment:
| Q |
1 |
gatggtgctttaggtgcattggttgagggtgacaatgaagcattggaggacaaggaaaatttggagaaattggtaatgattgctctttggtgtgttcaag |
100 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3056960 |
gatggtgctttatgtgcattggttgagggtgacaatgaagcattggaggacaaggaaaatttggagaaattggtaatgattgctctttggtgtgttcaag |
3057059 |
T |
|
| Q |
101 |
aggatccatatcttagaccaaacatgagagatgtggtacatatgcttgaaggtactgttgaagtgcaagttccaccatacccctcacaaattagtattca |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3057060 |
aggatccatatcttagaccaaacatgagagatgtggtacatatgcttgaaggtactgttgaagtgcaagttccaccatacccctcacaaattagtattca |
3057159 |
T |
|
| Q |
201 |
atattctctaaattaataagtctgtaagctaagattggcaacttgtgctaatacttgttgtgctcttttctaagattgacaacttgtgctgatacttgtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3057160 |
atattctctaaattaataagtctgtaagctaagattggcaacttgtgctaatacttgttgtgctcttttctaagattgacaacttgtgctgatacttgtt |
3057259 |
T |
|
| Q |
301 |
gtgctcttttaagtgtaccgtaatatttgcatttatgtttgtgtatcaagatgttgtttccatattatggtaggttccaatattagttcatctccacgta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3057260 |
gtgctcttttaagtgtaccgtaatatttgcatttatttttgtgtatcaagatgttgtttccatattatggtaggttccaatattagttcatctccacgta |
3057359 |
T |
|
| Q |
401 |
cccctcaatcatatgttgttcatctc |
426 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
3057360 |
cccctcaatcatatgttgttcatctc |
3057385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 3036092 - 3036348
Alignment:
| Q |
1 |
gatggtgctttaggtgcattggttgagggtgacaatgaagcattggaggacaaggaaaatttggagaaattggtaatgattgctctttggtgtgttcaag |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3036092 |
gatggtgctttagatgcattggttgagggtgacaatgaagcattggaggacaaggaaaatttggagaaattggtaatgattgctctttggtgtgttcaag |
3036191 |
T |
|
| Q |
101 |
aggatccatatcttagaccaaacatgagagatgtggtacatatgcttgaaggtactgttgaagtgcaagttccaccatacccctcacaaattagtattca |
200 |
Q |
| |
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||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
3036192 |
aggatccatgtcttagaccaaccatgagaaatgtggtacatatgcttgaaggtactgttgaagtgcaagttccaccatacccctcaccaattagtattca |
3036291 |
T |
|
| Q |
201 |
atattctctaaattaataagtctgtaagctaagattggcaacttgtgctaatacttg |
257 |
Q |
| |
|
||||||||||||||||||||| | |||| ||||||||||||||||||||||||||| |
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|
| T |
3036292 |
atattctctaaattaataagttgggaagcaaagattggcaacttgtgctaatacttg |
3036348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 2 - 221
Target Start/End: Complemental strand, 3069951 - 3069732
Alignment:
| Q |
2 |
atggtgctttaggtgcattggttgagggtgacaatgaagcattggaggacaaggaaaatttggagaaattggtaatgattgctctttggtgtgttcaaga |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
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|
| T |
3069951 |
atggtgctttaggtgcattggttgagggtgacaatgaggcattggaggacaaggaaaatttggagaaattggtaaagattgctatttggtgtgttcaaga |
3069852 |
T |
|
| Q |
102 |
ggatccatatcttagaccaaacatgagagatgtggtacatatgcttgaaggtactgttgaagtgcaagttccaccatacccctcacaaattagtattcaa |
201 |
Q |
| |
|
|||| ||| ||||||| ||| ||||||| ||||| ||||||||||||||||||||||||||||||||| ||| | ||||||||| ||||||||||| |
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| T |
3069851 |
ggatgcatgtcttagatcaaccatgagaaatgtgatacatatgcttgaaggtactgttgaagtgcaagctccgttaaacccctcaccgtttagtattcaa |
3069752 |
T |
|
| Q |
202 |
tattctctaaattaataagt |
221 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
3069751 |
tattctctaaattaataagt |
3069732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 19 - 152
Target Start/End: Complemental strand, 3048973 - 3048840
Alignment:
| Q |
19 |
ttggttgagggtgacaatgaagcattggaggacaaggaaaatttggagaaattggtaatgattgctctttggtgtgttcaagaggatccatatcttagac |
118 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3048973 |
ttggttgagggtgacaatgaggcattgaaggacaaggaaaatttggagaaattggtaaagattgctatttggtgtgttcaagaggatccatatcttagac |
3048874 |
T |
|
| Q |
119 |
caaacatgagagatgtggtacatatgcttgaagg |
152 |
Q |
| |
|
||| ||||||| ||||| |||||||||||||||| |
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|
| T |
3048873 |
caaccatgagaaatgtgatacatatgcttgaagg |
3048840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 143 - 252
Target Start/End: Complemental strand, 3048436 - 3048326
Alignment:
| Q |
143 |
tgcttgaaggtactgttgaagtgcaagttccaccat--acccctcacaaattagtattcaatattctctaaattaataagtctgtaagctaagattggca |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| |||| |||||||||| |||||||||||||||||||| | |||||| |||||||||| |
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|
| T |
3048436 |
tgcttgaaggtactgttgaagtgcaagttccaccatacacccttcaccaattagtattgaatattctctaaattaataactttgtaag-gaagattggca |
3048338 |
T |
|
| Q |
241 |
acttgtgctaat |
252 |
Q |
| |
|
||||||||||| |
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|
| T |
3048337 |
gcttgtgctaat |
3048326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 272 - 383
Target Start/End: Original strand, 3036322 - 3036432
Alignment:
| Q |
272 |
aagattgacaacttgtgctgatacttgttgtgctctttt-aagtgtaccgt--aatatttgcatttatgtttgtgtatcaagatgttgtttccatattat |
368 |
Q |
| |
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||||||| ||||||||||| ||||||| |||||||| ||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||| |
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| T |
3036322 |
aagattggcaacttgtgctaatacttgc---gctctttttaagtgtaccgtgtaatatttgcatttatgtttgtgt-tcaagatgtgatttccatattaa |
3036417 |
T |
|
| Q |
369 |
ggtaggttccaatat |
383 |
Q |
| |
|
||||||| ||||||| |
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|
| T |
3036418 |
ggtaggtcccaatat |
3036432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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