View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0942_high_41 (Length: 404)
Name: NF0942_high_41
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0942_high_41 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 30 - 404
Target Start/End: Original strand, 38880598 - 38880972
Alignment:
| Q |
30 |
caaagttcctaatccaaagaagtacaagaaggatacctcagttttagcagaagcattcactttctcctcatatctttcaacaatttgaacaagctcaggt |
129 |
Q |
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| T |
38880598 |
caaagttcctaatccaaagaagtacaagaaggatacctcagttttagcagaagcattcgctttctcctcatatctttcaacaatttgaacaagctcaggt |
38880697 |
T |
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| Q |
130 |
aaagtatattttttattggaagcaccaccacccttcattattctgttcgcgctgcaccaattatattacatttaaacaaatgatagatcatgtcagaata |
229 |
Q |
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| T |
38880698 |
aaagtatattttttattggaagcaccaccactcttcattattctgttcgcgctgcaccaattatattacatttaaacaaatgatagatcatgtcagaata |
38880797 |
T |
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| Q |
230 |
ttgaacagcttcataaaagttataaacataaagaattagaagtttttaactataaaaggaattcaattattagtacttatacaagatcaatgatagacac |
329 |
Q |
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| T |
38880798 |
ttgaacagcttcataaaagttataaacataaagaattagaagtttttaactataaaaggagttcaattattagtacttatacaagatcaatgatagacac |
38880897 |
T |
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| Q |
330 |
tgacatgcttatattccttgcaataaaaggaaaaggtgctcaaggnnnnnnnttaatcacaaagaaagtagttat |
404 |
Q |
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| T |
38880898 |
taacatgcttatattccttgcaataaaaggaaaaggtgctaaaggaaaaaatttaaccacaaagaaagtagttat |
38880972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 180 - 277
Target Start/End: Original strand, 16632280 - 16632378
Alignment:
| Q |
180 |
gctgcaccaattatattacatttaaacaaatgatagatcatgtcagaatattgaacagcttcataaaa-gttataaacataaagaattagaagttttta |
277 |
Q |
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| T |
16632280 |
gctgcatcgattatattacatttaaacagatggtagatcatgtcagaatattgaagagcttcagaaaatgttgtaaacataaagaattcaaagttttta |
16632378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 214 - 279
Target Start/End: Original strand, 16619938 - 16620003
Alignment:
| Q |
214 |
agatcatgtcagaatattgaacagcttcataaaagttataaacataaagaattagaagtttttaac |
279 |
Q |
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| T |
16619938 |
agataatgtcagaatattgaagaggttcctaaaagctataaacataaagaattaaaagtttttaac |
16620003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 180 - 255
Target Start/End: Original strand, 14630460 - 14630536
Alignment:
| Q |
180 |
gctgcaccaattatattacatttaaacaaatgatagatcatgtcagaatattgaacagcttcataaaa-gttataaa |
255 |
Q |
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| T |
14630460 |
gctgcatcaaatatattacatttacacagatggtagatcatgtcagaatattgaagagcttcagaaaatgttataaa |
14630536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 99
Target Start/End: Original strand, 16619794 - 16619832
Alignment:
| Q |
61 |
gatacctcagttttagcagaagcattcactttctcctca |
99 |
Q |
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| T |
16619794 |
gatacctcagttttggcagaagcattcactttctcctca |
16619832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 234
Target Start/End: Original strand, 16641193 - 16641238
Alignment:
| Q |
189 |
attatattacatttaaacaaatgatagatcatgtcagaatattgaa |
234 |
Q |
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| T |
16641193 |
attatattacatttaaacagatggtagatcaagtcagaatagtgaa |
16641238 |
T |
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