View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0942_high_42 (Length: 401)
Name: NF0942_high_42
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0942_high_42 |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 74 - 390
Target Start/End: Complemental strand, 22769843 - 22769550
Alignment:
| Q |
74 |
ctaagtaggaagccatgaaaaaatgacagattaattaaggagagaaatatgaatgaatatannnnnnnggtggtgtaaatatgtgagtatgaatgtataa |
173 |
Q |
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| T |
22769843 |
ctaagtaggaagccatgaaaaaatgacagattaattaaggagagaaatatgaatgaatatatttttttggtggtgta--------------------taa |
22769764 |
T |
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| Q |
174 |
cagagttctctagtgacgtttgccattagctgtgttgattactacagtagttgacttgacttggaaaattcacttaaaaagaagacttgagaaattggcc |
273 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
22769763 |
cagaattctctagtgacgtttgccattagctgtgttgattactacagtagttgacttgacttggaaaattcacttaaa---aagacttgagaaattggcc |
22769667 |
T |
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| Q |
274 |
acaaagagtgtattgagaattttcttggagcccttaatggactttacactaatagtccatttcatggagccacaagtttacatcgcagagtccaccacaa |
373 |
Q |
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| T |
22769666 |
acaaagagtgtattgagaattttattggagcccttatgtgactttacactaatagtccatttcatggagccacaagtttacatcgcagagtccaccacaa |
22769567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 15528698 - 15528632
Alignment:
| Q |
220 |
gtagttgacttgacttggaaaattcacttaaaaagaagacttgagaaattggccacaaagagtgtattg |
288 |
Q |
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| T |
15528698 |
gtagttgacttgacttcgacaattcacttaga--gaagacttaagaaattggccagaaagagtgtattg |
15528632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 373
Target Start/End: Complemental strand, 15528589 - 15528529
Alignment:
| Q |
313 |
gactttacactaatagtccatttcatggagccacaagtttacatcgcagagtccaccacaa |
373 |
Q |
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|||||||||||||| |||||||||||||| || |||||||||| | |||||||| ||||| |
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| T |
15528589 |
gactttacactaattgtccatttcatggaacccaaagtttacattgtagagtccatcacaa |
15528529 |
T |
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