View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0942_high_44 (Length: 400)

Name: NF0942_high_44
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0942_high_44
NF0942_high_44
[»] chr1 (2 HSPs)
chr1 (13-182)||(23485442-23485616)
chr1 (277-393)||(23486143-23486259)
[»] chr6 (1 HSPs)
chr6 (354-392)||(6561378-6561416)
[»] chr7 (1 HSPs)
chr7 (355-392)||(8259044-8259081)
[»] chr3 (1 HSPs)
chr3 (355-392)||(19264273-19264310)
[»] chr2 (2 HSPs)
chr2 (355-392)||(22268357-22268394)
chr2 (116-148)||(34129137-34129169)


Alignment Details
Target: chr1 (Bit Score: 116; Significance: 7e-59; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 13 - 182
Target Start/End: Original strand, 23485442 - 23485616
Alignment:
Q  13 aatatttaacgttagaaagagtaaacgtttacagagagtaatt----tgtaaaggagtagtagtgtaaaatatcaaagtgttaatgggnnnnnnnnnn-a 107  Q
    |||||||||||||||||||||||||||||||||||||||||||    |||||||||| ||||||||||||||||||||||||||||||           |    
T  23485442 aatatttaacgttagaaagagtaaacgtttacagagagtaattaatttgtaaaggaggagtagtgtaaaatatcaaagtgttaatgggatttttttttta 23485541  T
Q  108 aggaacaccaaccaaatttaaaacacaaataaatgtttaataagttcgactgcatgtgtccgaataaattaataa 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23485542 aggaacaccaaccaaatttaaaacacaaataaatgtttaataagttcgactgcatgtgtccgaataaattaataa 23485616  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 277 - 393
Target Start/End: Original strand, 23486143 - 23486259
Alignment:
Q  277 tataatcactacgattagaaatttcccacacacaagcaaaataacccctttgctcacgcacagaagaaagactcgtattacaatctaacttaatcaaacc 376  Q
    ||||||||||| ||||| ||||| ||| ||||||||||| | ||  | ||| ||||  |||| ||||||||||| ||||||||| |||||| ||||||      
T  23486143 tataatcactaagattacaaattcccctcacacaagcaagaaaattcattttctcaatcacaaaagaaagactcttattacaatataactttatcaaata 23486242  T
Q  377 aaagattgtttgattta 393  Q
    |||||||||||||||||    
T  23486243 aaagattgtttgattta 23486259  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 392
Target Start/End: Complemental strand, 6561416 - 6561378
Alignment:
Q  354 ttacaatctaacttaatcaaaccaaagattgtttgattt 392  Q
    |||||||||||||||||||||  ||||||||||||||||    
T  6561416 ttacaatctaacttaatcaaataaaagattgtttgattt 6561378  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 355 - 392
Target Start/End: Original strand, 8259044 - 8259081
Alignment:
Q  355 tacaatctaacttaatcaaaccaaagattgtttgattt 392  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  8259044 tacaatctaacttaatcaaataaaagattgtttgattt 8259081  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 355 - 392
Target Start/End: Original strand, 19264273 - 19264310
Alignment:
Q  355 tacaatctaacttaatcaaaccaaagattgtttgattt 392  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  19264273 tacaatctaacttaatcaaataaaagattgtttgattt 19264310  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 355 - 392
Target Start/End: Original strand, 22268357 - 22268394
Alignment:
Q  355 tacaatctaacttaatcaaaccaaagattgtttgattt 392  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  22268357 tacaatctaacttaatcaaataaaagattgtttgattt 22268394  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 148
Target Start/End: Original strand, 34129137 - 34129169
Alignment:
Q  116 caaccaaatttaaaacacaaataaatgtttaat 148  Q
    ||||||||||||||||| |||||||||||||||    
T  34129137 caaccaaatttaaaacaaaaataaatgtttaat 34129169  T

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