View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0942_high_47 (Length: 369)
Name: NF0942_high_47
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0942_high_47 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 145; Significance: 3e-76; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 206 - 358
Target Start/End: Complemental strand, 16810050 - 16809898
Alignment:
| Q |
206 |
atattacggtgttaattgtgttgtgacgcttgaaagcattttcaagcttgtttgattgctcagttgtaagcctcaatttctttgtgcacccgttgttatc |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
16810050 |
atattacggtgttaattgtgttgtgacgcttgaaggcattttcaagcttgtttgattgctcagttgtaagcctcaatttctttgggcacccgttgttatc |
16809951 |
T |
|
| Q |
306 |
attggtggtgtcaatagcaatttcttcttcaacagtgtttgcttgttcttcat |
358 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16809950 |
attggtggtgtcaatagcaatttcttcttcaacagtgtttgcttgttcttcat |
16809898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 206 - 358
Target Start/End: Complemental strand, 16849331 - 16849179
Alignment:
| Q |
206 |
atattacggtgttaattgtgttgtgacgcttgaaagcattttcaagcttgtttgattgctcagttgtaagcctcaatttctttgtgcacccgttgttatc |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
16849331 |
atattacggtgttaattgtgttgtgacgcttgaaggcattttcaagcttgtttgattgctcagttgtaagcctcaatttctttgggcacccgttgttatc |
16849232 |
T |
|
| Q |
306 |
attggtggtgtcaatagcaatttcttcttcaacagtgtttgcttgttcttcat |
358 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16849231 |
attggtggtgtcaatagcaatttcttcttcaacagtgtttgcttgttcttcat |
16849179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 78
Target Start/End: Complemental strand, 16810213 - 16810178
Alignment:
| Q |
43 |
tcaattctcttaaattttgataaatgaaaatttaac |
78 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
16810213 |
tcaattctcttaaattttgataaatgaaaatttaac |
16810178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 78
Target Start/End: Complemental strand, 16849494 - 16849459
Alignment:
| Q |
43 |
tcaattctcttaaattttgataaatgaaaatttaac |
78 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
16849494 |
tcaattctcttaaattttgataaatgaaaatttaac |
16849459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University