View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0942_high_59 (Length: 349)
Name: NF0942_high_59
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0942_high_59 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 175; Significance: 4e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 161 - 339
Target Start/End: Original strand, 16727884 - 16728062
Alignment:
| Q |
161 |
cttattatataaattatttgatatgaaataacaatttaactatatataacagaacattccggagtcattaacagcaagattattaaacttggagatgttg |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
16727884 |
cttattatataaattatttgatatgaaataacaatttaactatatataacagaacattccggagtcattaacagcaagattattaaacttggaaatgttg |
16727983 |
T |
|
| Q |
261 |
gacgtgcactccaaccagcttagatccctacccaattccattggttgtctctctaaactcaaagttttgaatgtctctg |
339 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16727984 |
gacgtgcactccaaccagcttagatccctacccaattccattggttgtctctctaaactcaaagttttgaatgtctctg |
16728062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 209 - 337
Target Start/End: Complemental strand, 52729482 - 52729354
Alignment:
| Q |
209 |
acagaacattccggagtcattaacagcaagattattaaacttggagatgttggacgtgcactccaaccagcttagatccctacccaattccattggttgt |
308 |
Q |
| |
|
|||||| ||||||||||| |||||||||||| | | ||| ||| |||||||||||||||| ||||||||||| || || || || ||||||||||| |
|
|
| T |
52729482 |
acagaatattccggagtcgttaacagcaagactgctgaacatggtagtgttggacgtgcactcaaaccagcttaggtctctcccaaactccattggttgc |
52729383 |
T |
|
| Q |
309 |
ctctctaaactcaaagttttgaatgtctc |
337 |
Q |
| |
|
||||||| ||||| ||||||||||||| |
|
|
| T |
52729382 |
ctctctaggctcaagcttttgaatgtctc |
52729354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University