View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0942_high_68 (Length: 330)
Name: NF0942_high_68
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0942_high_68 |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 1e-87; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 31252003 - 31251746
Alignment:
| Q |
1 |
tgaaatcatatcaaacaagctcagaagttttatgcagttttggaatgctacccctaataaatcaccacttttgtgtatgaatgacatctagagttccaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
31252003 |
tgaaatcatatcaaacaagctcagaagttttatgcagttttggaatgctacccctaataaatcaccacttttgtgtatgaatgacatctagaattccaaa |
31251904 |
T |
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| Q |
101 |
cagaaacaatgacgagaaaagaaacacatcatttgattgnnnnnnnnnnnnnnatgacttagtatgtaaaataacaggtttaatgttatttttttga-gg |
199 |
Q |
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| T |
31251903 |
cagaaacaatgacgagaaaagaaacacatcatttgattgtttttttcctttttatgacttagtatgtaaaataacaggtttaatgttatttttttgaggg |
31251804 |
T |
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| Q |
200 |
aagagtcggtttaatannnnnnnnnnnnattatttaatatgaaatctcccgtttctttt |
258 |
Q |
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| T |
31251803 |
aagagtcggtttaata-tttttttttttattatttaatatgaaatctcccgtttctttt |
31251746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 25815140 - 25815278
Alignment:
| Q |
1 |
tgaaatcatatcaaacaagctcagaagttttatgcagttttggaatgctacccctaataaatcaccacttttgtgtatgaatgacatctagagttccaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25815140 |
tgaaatcatatcaaacaagctcagaagttttatgcagttttggaatgctacccctaataaatcaccacttttgtgtatgaatgacatctagagttccaaa |
25815239 |
T |
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| Q |
101 |
cagaaacaatgacgagaaaagaaacacatcatttgattg |
139 |
Q |
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| T |
25815240 |
cagaaacaatgacgagaaaagaaacacatcatttgattg |
25815278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 259
Target Start/End: Original strand, 25815373 - 25815404
Alignment:
| Q |
228 |
attatttaatatgaaatctcccgtttcttttc |
259 |
Q |
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| T |
25815373 |
attatttaatatgaaatctcccgtttcttttc |
25815404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 23052912 - 23052961
Alignment:
| Q |
25 |
aagttttatgcagttttggaatgctacccctaataaatcaccacttttgtg |
75 |
Q |
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||||||||||||||||||||||| | |||||||||||||||||||| |||| |
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| T |
23052912 |
aagttttatgcagttttggaatggt-cccctaataaatcaccacttgtgtg |
23052961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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