View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0942_high_72 (Length: 315)
Name: NF0942_high_72
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0942_high_72 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 30 - 305
Target Start/End: Original strand, 7488284 - 7488559
Alignment:
| Q |
30 |
ccattcttataaaagtgcgacaattgctgttggaaaagagggatttgatgtgtattacggtgtcacatgagagaagagttacatagggttttgtttcatg |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
7488284 |
ccattcttataaaagtgcgacaattgctgttggaaaagagggatttgatgtgtattacggtgtgacatgagagaagagttacatagggttttgtttcatg |
7488383 |
T |
|
| Q |
130 |
aaggatcatgagattaggactgtcagacatgtttatgtgcctccttttcagaaaggtggggttctgagtaagatcattccaagaccgttgaacacatcta |
229 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7488384 |
aaggatcatgagattaggactatcagacatgtttatgtgcctccttttcagaaaggtggggttctgagtaagatcattccaagaccgttgaacacatcta |
7488483 |
T |
|
| Q |
230 |
aaacccatcaatgaatttagaggaagccacaccaaaatctcagtctctaaatctattcctaaattcatcttctctg |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7488484 |
aaacccatcaatgaatttagaggaagccacaccaaaatctcagtctctaaatctattcctaaattcatcttctctg |
7488559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 57 - 296
Target Start/End: Complemental strand, 6943732 - 6943493
Alignment:
| Q |
57 |
tgttggaaaagagggatttgatgtgtattacggtgtcacatgagagaagagttacatagggttttgtttcatgaaggatcatgagattaggactgtcaga |
156 |
Q |
| |
|
||||||||||| |||||||||||||||||| | |||||||||||||||| |||||||| || | ||| || ||||||||||||| ||||||| ||| |
|
|
| T |
6943732 |
tgttggaaaagggggatttgatgtgtattaggttgtcacatgagagaagggttacataattttgttttttattaaggatcatgagactaggactatcatg |
6943633 |
T |
|
| Q |
157 |
catgtttatgtgcctccttttcagaaaggtggggttctgagtaagatcattccaagaccgttgaacacatctaaaacccatcaatgaatttagaggaagc |
256 |
Q |
| |
|
||| || ||||||| || ||||||||||| ||| ||||| |||| |||||||||| |||||||||||||| ||| ||||||||| ||||| || ||| |
|
|
| T |
6943632 |
catattcatgtgccgccgtttcagaaaggcagggctctgaacaagaacattccaagatcgttgaacacatctgaaaagcatcaatgactttagtggcagc |
6943533 |
T |
|
| Q |
257 |
cacaccaaaatctcagtctctaaatctattcctaaattca |
296 |
Q |
| |
|
||| |||||||||| ||||||||||||| |||||||||| |
|
|
| T |
6943532 |
cacgccaaaatctccgtctctaaatctaaccctaaattca |
6943493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 173 - 303
Target Start/End: Original strand, 7475563 - 7475693
Alignment:
| Q |
173 |
cttttcagaaaggtggggttctgagtaagatcattccaagaccgttgaacacatctaaaacccatcaatgaatttagaggaagccacaccaaaatctcag |
272 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||||| ||||||||| |||||| | ||||||||| |||| || |||||||| ||||||||| |
|
|
| T |
7475563 |
cttttcagaaaggtgggggtctgaataagatcattccaagaacgttgaacaagtctaaagctcatcaatgactttaatggcagccacactaaaatctcaa |
7475662 |
T |
|
| Q |
273 |
tctctaaatctattcctaaattcatcttctc |
303 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |
|
|
| T |
7475663 |
tctctaaatctattcctaaactcatcttctc |
7475693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 96 - 285
Target Start/End: Complemental strand, 7873332 - 7873146
Alignment:
| Q |
96 |
atgagagaagagttacatagggttttgtttcatgaaggatcatgagattaggactgtcagacatgtttatgtgcctccttttcagaaaggtggggttctg |
195 |
Q |
| |
|
|||||||||| ||||||||||||| | ||| | |||||||| ||| | | || ||| ||||||| || ||||| ||||||| |||||| || ||||| |
|
|
| T |
7873332 |
atgagagaagggttacatagggttcttttttgttaaggatcaagagct---ggctatcaaacatgttcatctgccttcttttcataaaggtaggtttctg |
7873236 |
T |
|
| Q |
196 |
agtaagatcattccaagaccgttgaacacatctaaaacccatcaatgaatttagaggaagccacaccaaaatctcagtctctaaatctat |
285 |
Q |
| |
|
| |||||||||||||||| |||| |||||||||||||| |||||||| |||||| |||| |||||||||||||| |||||||||||||| |
|
|
| T |
7873235 |
aataagatcattccaagaacgttcaacacatctaaaacgaatcaatgactttagaagaagtcacaccaaaatctccgtctctaaatctat |
7873146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 60 - 150
Target Start/End: Original strand, 7475474 - 7475564
Alignment:
| Q |
60 |
tggaaaagagggatttgatgtgtattacggtgtcacatgagagaagagttacatagggttttgtttcatgaaggatcatgagattaggact |
150 |
Q |
| |
|
|||||||| ||||||||||||| |||| | |||||| ||||||||| |||| |||||||| | ||||| |||||| ||||||||| |||| |
|
|
| T |
7475474 |
tggaaaagggggatttgatgtgcattaggttgtcacgtgagagaagggttatatagggttgttcttcataaaggattatgagattatgact |
7475564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University