View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0942_high_74 (Length: 312)

Name: NF0942_high_74
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0942_high_74
NF0942_high_74
[»] chr3 (7 HSPs)
chr3 (110-303)||(26797052-26797263)
chr3 (235-294)||(26387791-26387850)
chr3 (45-87)||(29346640-29346682)
chr3 (235-293)||(26297857-26297915)
chr3 (229-278)||(10341912-10341961)
chr3 (235-294)||(11474955-11475015)
chr3 (229-273)||(16970592-16970636)
[»] chr8 (15 HSPs)
chr8 (235-295)||(13583466-13583526)
chr8 (235-302)||(28260236-28260304)
chr8 (239-294)||(11437528-11437583)
chr8 (44-98)||(8831485-8831539)
chr8 (229-302)||(28074613-28074687)
chr8 (44-98)||(28225979-28226033)
chr8 (247-302)||(31436579-31436635)
chr8 (238-294)||(12357582-12357638)
chr8 (238-294)||(12358710-12358766)
chr8 (235-294)||(5153867-5153926)
chr8 (252-294)||(6888156-6888198)
chr8 (44-85)||(29368948-29368989)
chr8 (235-302)||(14424759-14424827)
chr8 (234-286)||(27097745-27097797)
chr8 (238-294)||(29291879-29291935)
[»] chr7 (8 HSPs)
chr7 (229-301)||(20461588-20461661)
chr7 (238-294)||(8308981-8309037)
chr7 (235-294)||(3487312-3487371)
chr7 (229-302)||(5312726-5312800)
chr7 (235-273)||(7777985-7778023)
chr7 (229-273)||(7815454-7815498)
chr7 (229-273)||(9761355-9761399)
chr7 (229-273)||(10292885-10292929)
[»] chr4 (9 HSPs)
chr4 (229-290)||(9288323-9288384)
chr4 (235-302)||(31859847-31859915)
chr4 (44-99)||(19852286-19852341)
chr4 (229-294)||(26159865-26159930)
chr4 (229-303)||(17187274-17187347)
chr4 (236-294)||(23353731-23353789)
chr4 (229-302)||(15192303-15192378)
chr4 (235-294)||(29437580-29437639)
chr4 (235-294)||(34864241-34864301)
[»] chr6 (8 HSPs)
chr6 (237-294)||(24617620-24617677)
chr6 (229-294)||(9396547-9396611)
chr6 (245-294)||(16439567-16439616)
chr6 (245-294)||(14768225-14768274)
chr6 (245-294)||(32930429-32930478)
chr6 (238-294)||(14924367-14924423)
chr6 (234-278)||(24507387-24507431)
chr6 (229-285)||(33638445-33638501)
[»] chr5 (9 HSPs)
chr5 (229-294)||(19763833-19763898)
chr5 (229-294)||(26070583-26070648)
chr5 (235-294)||(20694749-20694808)
chr5 (235-273)||(22229935-22229973)
chr5 (245-294)||(24279582-24279631)
chr5 (245-294)||(24382583-24382632)
chr5 (229-273)||(12339954-12339998)
chr5 (229-273)||(25075252-25075296)
chr5 (229-273)||(25133221-25133265)
[»] chr2 (8 HSPs)
chr2 (235-303)||(17415109-17415178)
chr2 (235-302)||(19541137-19541205)
chr2 (229-290)||(18818810-18818871)
chr2 (229-273)||(1733222-1733266)
chr2 (230-294)||(39730556-39730620)
chr2 (231-294)||(1732660-1732723)
chr2 (235-294)||(18236249-18236308)
chr2 (229-294)||(15454479-15454544)
[»] chr1 (8 HSPs)
chr1 (229-294)||(26102166-26102231)
chr1 (44-87)||(13062195-13062238)
chr1 (44-80)||(39332184-39332220)
chr1 (245-303)||(18795280-18795339)
chr1 (229-294)||(25126589-25126654)
chr1 (229-273)||(8247597-8247641)
chr1 (235-294)||(26854266-26854323)
chr1 (229-273)||(30781891-30781935)
[»] scaffold0190 (1 HSPs)
scaffold0190 (234-273)||(11643-11682)
[»] scaffold0065 (1 HSPs)
scaffold0065 (234-302)||(12344-12414)
[»] scaffold0337 (1 HSPs)
scaffold0337 (234-278)||(1934-1978)
[»] scaffold0171 (1 HSPs)
scaffold0171 (229-273)||(6326-6370)


Alignment Details
Target: chr3 (Bit Score: 103; Significance: 3e-51; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 110 - 303
Target Start/End: Original strand, 26797052 - 26797263
Alignment:
Q  110 ttaatggatttcttaacaagtacagcgcttaagatcgaagttgtatacttgacttcaattacaaaatcgaccttttaagaggtctgaaacaactttccta 209  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||| ||||| | ||||||||||||||||    
T  26797052 ttaatggatttcttaacaagtacaacgcttaagatcgaagttgtatacttgacttcagttacaaaatcaaccttt-aagagatttgaaacaactttccta 26797150  T
Q  210 gtgt-------------------atgtcaatctgtgtctccttaatccttcacttgatgtcttgttttgttgatttacatgatatctctctaaaaagact 290  Q
    |||                    |||||||||  ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  26797151 gtggcttcagccttctctagtgaatgtcaatccatgtctccttgatccttcacttgatgtcttgttttgtcgatttacatgatatctctctaaaaagact 26797250  T
Q  291 caaacacctatga 303  Q
    |||||||||||||    
T  26797251 caaacacctatga 26797263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 235 - 294
Target Start/End: Original strand, 26387791 - 26387850
Alignment:
Q  235 atccttcacttgatgtcttgttttgttgatttacatgatatctctctaaaaagactcaaa 294  Q
    ||||||||||||||||||||||| | ||||||||||||| ||||  ||||||||||||||    
T  26387791 atccttcacttgatgtcttgtttagctgatttacatgatttctcattaaaaagactcaaa 26387850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 45 - 87
Target Start/End: Complemental strand, 29346682 - 29346640
Alignment:
Q  45 ttggaaagaatatgcacactctttaaggctgcagcataatgga 87  Q
    ||||||||||| |||||||||||||||||||||||||||||||    
T  29346682 ttggaaagaatctgcacactctttaaggctgcagcataatgga 29346640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 293
Target Start/End: Complemental strand, 26297915 - 26297857
Alignment:
Q  235 atccttcacttgatgtcttgttttgttgatttacatgatatctctctaaaaagactcaa 293  Q
    |||||||||||||||||||||||||  |||||||||||| | || ||||| ||||||||    
T  26297915 atccttcacttgatgtcttgttttgccgatttacatgatttatcactaaatagactcaa 26297857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 229 - 278
Target Start/End: Complemental strand, 10341961 - 10341912
Alignment:
Q  229 tccttaatccttcacttgatgtcttgttttgttgatttacatgatatctc 278  Q
    |||||||||||||||||||||| | | |||||||||||||||||| ||||    
T  10341961 tccttaatccttcacttgatgtttggatttgttgatttacatgatttctc 10341912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 294
Target Start/End: Complemental strand, 11475015 - 11474955
Alignment:
Q  235 atccttcacttgatgtcttgttttgttgatttacatgatatctctct-aaaaagactcaaa 294  Q
    ||||||||  |||||||||||||||  |||||||||||| |||| || |||||||||||||    
T  11475015 atccttcatgtgatgtcttgttttgccgatttacatgatttctcactaaaaaagactcaaa 11474955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 273
Target Start/End: Complemental strand, 16970636 - 16970592
Alignment:
Q  229 tccttaatccttcacttgatgtcttgttttgttgatttacatgat 273  Q
    ||||| ||||||||| |||||||||| ||||| ||||||||||||    
T  16970636 tccttgatccttcacatgatgtcttgatttgtcgatttacatgat 16970592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 235 - 295
Target Start/End: Original strand, 13583466 - 13583526
Alignment:
Q  235 atccttcacttgatgtcttgttttgttgatttacatgatatctctctaaaaagactcaaac 295  Q
    |||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||    
T  13583466 atccttcacttgatgtcttgttttgtcgatttacatgatttctcactaaaaagactcaaac 13583526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 302
Target Start/End: Original strand, 28260236 - 28260304
Alignment:
Q  235 atccttcacttgatgtcttgttttgttgatttacatgatatctctctaaaaagactc-aaacacctatg 302  Q
    ||||| ||| ||||||||||||||| ||||||||||||| |||| |||||||||||| |||||||||||    
T  28260236 atcctccacgtgatgtcttgttttgctgatttacatgatttctcactaaaaagactcaaaacacctatg 28260304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 239 - 294
Target Start/End: Complemental strand, 11437583 - 11437528
Alignment:
Q  239 ttcacttgatgtcttgttttgttgatttacatgatatctctctaaaaagactcaaa 294  Q
    |||||||||||||||||||||  |||||||||||| |||| |||||||||||||||    
T  11437583 ttcacttgatgtcttgttttgccgatttacatgatttctcactaaaaagactcaaa 11437528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 44 - 98
Target Start/End: Original strand, 8831485 - 8831539
Alignment:
Q  44 tttggaaagaatatgcacactctttaaggctgcagcataatggagagatgatttg 98  Q
    |||||||||||| ||||||||||||| |||||||||| |||||||||| ||||||    
T  8831485 tttggaaagaatctgcacactctttagggctgcagcagaatggagagaggatttg 8831539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 229 - 302
Target Start/End: Complemental strand, 28074687 - 28074613
Alignment:
Q  229 tccttaatccttcacttgatgtcttgttttgttgatttacatgatatctctctaaaaagactc-aaacacctatg 302  Q
    ||||| |||||||| ||||||||||||||||   ||||||||||| |||| |||||||||||| |||||||||||    
T  28074687 tccttgatccttcatttgatgtcttgttttgcatatttacatgatttctcactaaaaagactcgaaacacctatg 28074613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 44 - 98
Target Start/End: Original strand, 28225979 - 28226033
Alignment:
Q  44 tttggaaagaatatgcacactctttaaggctgcagcataatggagagatgatttg 98  Q
    |||||||||||| | ||||||||||| |||||||||| |||||||||||||||||    
T  28225979 tttggaaagaatctacacactctttagggctgcagcagaatggagagatgatttg 28226033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 247 - 302
Target Start/End: Complemental strand, 31436635 - 31436579
Alignment:
Q  247 atgtcttgttttgttgatttacatgatatctctctaaaaagactc-aaacacctatg 302  Q
    ||||||||||||||||||||||||||| |||| ||||||||| || |||||||||||    
T  31436635 atgtcttgttttgttgatttacatgatttctcactaaaaagattcaaaacacctatg 31436579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 294
Target Start/End: Complemental strand, 12357638 - 12357582
Alignment:
Q  238 cttcacttgatgtcttgttttgttgatttacatgatatctctctaaaaagactcaaa 294  Q
    |||||||||||||||||||||   ||||||||| || |||| |||||||||||||||    
T  12357638 cttcacttgatgtcttgtttttcagatttacataatttctcactaaaaagactcaaa 12357582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 294
Target Start/End: Complemental strand, 12358766 - 12358710
Alignment:
Q  238 cttcacttgatgtcttgttttgttgatttacatgatatctctctaaaaagactcaaa 294  Q
    |||||||||||||||||||||   ||||||||| || |||| |||||||||||||||    
T  12358766 cttcacttgatgtcttgtttttcagatttacataatttctcactaaaaagactcaaa 12358710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 294
Target Start/End: Complemental strand, 5153926 - 5153867
Alignment:
Q  235 atccttcacttgatgtcttgttttgttgatttacatgatatctctctaaaaagactcaaa 294  Q
    ||||||||||| |||||||||||||   ||||||||||| |||  |||||||||||||||    
T  5153926 atccttcactttatgtcttgttttgcctatttacatgatttcttactaaaaagactcaaa 5153867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 294
Target Start/End: Original strand, 6888156 - 6888198
Alignment:
Q  252 ttgttttgttgatttacatgatatctctctaaaaagactcaaa 294  Q
    |||||||||||||||||||||| |||| |||||| ||||||||    
T  6888156 ttgttttgttgatttacatgatttctcactaaaatgactcaaa 6888198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 29368989 - 29368948
Alignment:
Q  44 tttggaaagaatatgcacactctttaaggctgcagcataatg 85  Q
    |||||||||||| |||||||| ||||||||||||||| ||||    
T  29368989 tttggaaagaatctgcacactttttaaggctgcagcagaatg 29368948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 302
Target Start/End: Original strand, 14424759 - 14424827
Alignment:
Q  235 atccttcacttgatgtcttgttttgttgatttacatgatatctctctaaaaaga-ctcaaacacctatg 302  Q
    ||||||| |||| ||||||||||||  |||||||||||| |||| ||||||| | || |||||||||||    
T  14424759 atccttcccttgttgtcttgttttgccgatttacatgatttctcactaaaaaaacctaaaacacctatg 14424827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 27097745 - 27097797
Alignment:
Q  234 aatccttcacttgatgtcttgttttgttgatttacatgatatctctctaaaaa 286  Q
    ||||| |||| |||||||||||||||  |||||||||||| |||| |||||||    
T  27097745 aatccatcacgtgatgtcttgttttgccgatttacatgatttctcactaaaaa 27097797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 294
Target Start/End: Complemental strand, 29291935 - 29291879
Alignment:
Q  238 cttcacttgatgtcttgttttgttgatttacatgatatctctctaaaaagactcaaa 294  Q
    |||||| |||| ||||||||||  |||||||||||| |||  |||||||||||||||    
T  29291935 cttcacgtgatatcttgttttgccgatttacatgatttcttactaaaaagactcaaa 29291879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 229 - 301
Target Start/End: Original strand, 20461588 - 20461661
Alignment:
Q  229 tccttaatccttcacttgatgtcttgttttgttgatttacatgatatctctctaaaaagactc-aaacacctat 301  Q
    ||||| ||||||||||||||||||| |||||  |||||||||||| |||| |||||||||||| ||||||||||    
T  20461588 tccttgatccttcacttgatgtcttattttgccgatttacatgatttctcactaaaaagactcgaaacacctat 20461661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 238 - 294
Target Start/End: Original strand, 8308981 - 8309037
Alignment:
Q  238 cttcacttgatgtcttgttttgttgatttacatgatatctctctaaaaagactcaaa 294  Q
    |||||| ||||||||||||||| ||||||||||||| |||  |||||||||||||||    
T  8308981 cttcacgtgatgtcttgttttgctgatttacatgatttcttactaaaaagactcaaa 8309037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 294
Target Start/End: Original strand, 3487312 - 3487371
Alignment:
Q  235 atccttcacttgatgtcttgttttgttgatttacatgatatctctctaaaaagactcaaa 294  Q
    |||||||| ||||||||||||||||  |||| ||||||| ||||  ||||||||||||||    
T  3487312 atccttcatttgatgtcttgttttgccgattcacatgatttctcattaaaaagactcaaa 3487371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 302
Target Start/End: Original strand, 5312726 - 5312800
Alignment:
Q  229 tccttaatccttcacttgatgtcttgttttgttgatttacatgatatctctctaaaaagactc-aaacacctatg 302  Q
    ||||| |||||||||||||||| |  |||||  |||||||||||| | || |||||||||||| |||||||||||    
T  5312726 tccttgatccttcacttgatgtttatttttgccgatttacatgatttatcactaaaaagactcaaaacacctatg 5312800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 273
Target Start/End: Original strand, 7777985 - 7778023
Alignment:
Q  235 atccttcacttgatgtcttgttttgttgatttacatgat 273  Q
    ||||||||| |||||||||| ||||||||||||||||||    
T  7777985 atccttcacgtgatgtcttgctttgttgatttacatgat 7778023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 273
Target Start/End: Complemental strand, 7815498 - 7815454
Alignment:
Q  229 tccttaatccttcacttgatgtcttgttttgttgatttacatgat 273  Q
    ||||| ||||||||| |||||||||  ||||||||||||||||||    
T  7815498 tccttgatccttcacatgatgtctttatttgttgatttacatgat 7815454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 273
Target Start/End: Original strand, 9761355 - 9761399
Alignment:
Q  229 tccttaatccttcacttgatgtcttgttttgttgatttacatgat 273  Q
    ||||| ||||||||| |||||||||| ||||| ||||||||||||    
T  9761355 tccttgatccttcacgtgatgtcttgatttgtcgatttacatgat 9761399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 273
Target Start/End: Complemental strand, 10292929 - 10292885
Alignment:
Q  229 tccttaatccttcacttgatgtcttgttttgttgatttacatgat 273  Q
    ||||| ||||||||| |||||||||| |||| |||||||||||||    
T  10292929 tcctttatccttcacatgatgtcttgatttgatgatttacatgat 10292885  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 229 - 290
Target Start/End: Complemental strand, 9288384 - 9288323
Alignment:
Q  229 tccttaatccttcacttgatgtcttgttttgttgatttacatgatatctctctaaaaagact 290  Q
    ||||| |||||||||||||||||||||||||  |||||||||||| |||| |||||||||||    
T  9288384 tccttgatccttcacttgatgtcttgttttgccgatttacatgatttctcactaaaaagact 9288323  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 302
Target Start/End: Original strand, 31859847 - 31859915
Alignment:
Q  235 atccttcacttgatgtcttgttttgttgatttacatgatatctctctaaaaagactc-aaacacctatg 302  Q
    ||||||||| || |||||||||||| ||||||||||||| |||| |||||||||||| |||||||||||    
T  31859847 atccttcacctggtgtcttgttttgctgatttacatgatttctcactaaaaagactcaaaacacctatg 31859915  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 99
Target Start/End: Complemental strand, 19852341 - 19852286
Alignment:
Q  44 tttggaaagaatatgcacactctttaaggctgcagcataatggagagatgatttga 99  Q
    |||||||||||| ||||||||||||| |||||||||| |||||||||| |||||||    
T  19852341 tttggaaagaatttgcacactctttagggctgcagcagaatggagagaggatttga 19852286  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 229 - 294
Target Start/End: Complemental strand, 26159930 - 26159865
Alignment:
Q  229 tccttaatccttcacttgatgtcttgttttgttgatttacatgatatctctctaaaaagactcaaa 294  Q
    |||| |||||||||| ||||||||||||||| |||| |||||||| | || |||||||||||||||    
T  26159930 tcctgaatccttcacatgatgtcttgttttgctgatctacatgatttttcactaaaaagactcaaa 26159865  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 303
Target Start/End: Complemental strand, 17187347 - 17187274
Alignment:
Q  229 tccttaatccttcacttgatgtcttgttttgttgatttacatgatatctctctaaaaagactcaaacacctatga 303  Q
    |||| |||| |||||||||||| || |||||| |||||||||||| | || |||||||||||| |||||||||||    
T  17187347 tcctcaatcattcacttgatgtgttattttgtcgatttacatgatttatcactaaaaagactc-aacacctatga 17187274  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 294
Target Start/End: Complemental strand, 23353789 - 23353731
Alignment:
Q  236 tccttcacttgatgtcttgttttgttgatttacatgatatctctctaaaaagactcaaa 294  Q
    |||||||  |||||||||||||||  |||||||||||| |||| |||||||||||||||    
T  23353789 tccttcatgtgatgtcttgttttgccgatttacatgatttctcactaaaaagactcaaa 23353731  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 229 - 302
Target Start/End: Complemental strand, 15192378 - 15192303
Alignment:
Q  229 tccttaatccttcacttgatgtcttgttttgttgatttacatgatatctctcta-aaaagactc-aaacacctatg 302  Q
    ||||| ||||||||| |||||||||| ||||| |||||||||||| |||| ||| |||| |||| |||||||||||    
T  15192378 tccttgatccttcacgtgatgtcttggtttgtcgatttacatgatttctcactacaaaacactcaaaacacctatg 15192303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 294
Target Start/End: Complemental strand, 29437639 - 29437580
Alignment:
Q  235 atccttcacttgatgtcttgttttgttgatttacatgatatctctctaaaaagactcaaa 294  Q
    ||||||||| ||||||||||| |||  |||||||||||| ||||  ||||||||||||||    
T  29437639 atccttcacgtgatgtcttgtcttgccgatttacatgatttctcattaaaaagactcaaa 29437580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 294
Target Start/End: Original strand, 34864241 - 34864301
Alignment:
Q  235 atccttcacttgatgtcttgttttgttgatttacatgatatctctcta-aaaagactcaaa 294  Q
    ||||||||| |||||||||| ||||| |||||||||||| |||| ||| |||| |||||||    
T  34864241 atccttcacgtgatgtcttgatttgtcgatttacatgatttctcactacaaaacactcaaa 34864301  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 294
Target Start/End: Complemental strand, 24617677 - 24617620
Alignment:
Q  237 ccttcacttgatgtcttgttttgttgatttacatgatatctctctaaaaagactcaaa 294  Q
    ||||||| ||||||||||||||| |||||||||| || |||| |||||||||||||||    
T  24617677 ccttcacatgatgtcttgttttgctgatttacataatttctcactaaaaagactcaaa 24617620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 229 - 294
Target Start/End: Original strand, 9396547 - 9396611
Alignment:
Q  229 tccttaatccttcacttgatgtcttgttttgttgatttacatgatatctctctaaaaagactcaaa 294  Q
    ||||| ||||||||| |||||||||||||||  |||||| ||||| |||| |||||||||||||||    
T  9396547 tccttgatccttcacgtgatgtcttgttttgccgattta-atgatttctcactaaaaagactcaaa 9396611  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 245 - 294
Target Start/End: Complemental strand, 16439616 - 16439567
Alignment:
Q  245 tgatgtcttgttttgttgatttacatgatatctctctaaaaagactcaaa 294  Q
    ||||||||||||||  ||||||||||||| |||| |||||||||||||||    
T  16439616 tgatgtcttgtttttctgatttacatgatttctcactaaaaagactcaaa 16439567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 294
Target Start/End: Original strand, 14768225 - 14768274
Alignment:
Q  245 tgatgtcttgttttgttgatttacatgatatctctctaaaaagactcaaa 294  Q
    |||||||||||||||  |||||||||||| ||| ||| ||||||||||||    
T  14768225 tgatgtcttgttttgccgatttacatgatttctatctgaaaagactcaaa 14768274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 294
Target Start/End: Original strand, 32930429 - 32930478
Alignment:
Q  245 tgatgtcttgttttgttgatttacatgatatctctctaaaaagactcaaa 294  Q
    |||||||||||||||   ||||||||||| |||| |||||||||||||||    
T  32930429 tgatgtcttgttttgccaatttacatgatttctcactaaaaagactcaaa 32930478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 294
Target Start/End: Original strand, 14924367 - 14924423
Alignment:
Q  238 cttcacttgatgtcttgttttgttgatttacatgatatctctctaaaaagactcaaa 294  Q
    ||||| |||||||||||||| | || |||||||||| |||| || ||||||||||||    
T  14924367 cttcatttgatgtcttgtttagctggtttacatgatttctcacttaaaagactcaaa 14924423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 278
Target Start/End: Original strand, 24507387 - 24507431
Alignment:
Q  234 aatccttcacttgatgtcttgttttgttgatttacatgatatctc 278  Q
    |||||||||| |||||||||| |||||||||||||| ||| ||||    
T  24507387 aatccttcacgtgatgtcttgatttgttgatttacaggatttctc 24507431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 285
Target Start/End: Original strand, 33638445 - 33638501
Alignment:
Q  229 tccttaatccttcacttgatgtcttgttttgttgatttacatgatatctctctaaaa 285  Q
    ||||| |||||||||||||| | ||||||||  |||||||||||| |||| ||||||    
T  33638445 tccttgatccttcacttgatatattgttttgccgatttacatgatttctcactaaaa 33638501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 229 - 294
Target Start/End: Original strand, 19763833 - 19763898
Alignment:
Q  229 tccttaatccttcacttgatgtcttgttttgttgatttacatgatatctctctaaaaagactcaaa 294  Q
    ||||| || ||||||||||||||| ||||||  |||||||||||| |||| |||||||||||||||    
T  19763833 tccttgattcttcacttgatgtctcgttttgccgatttacatgatttctcactaaaaagactcaaa 19763898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 229 - 294
Target Start/End: Complemental strand, 26070648 - 26070583
Alignment:
Q  229 tccttaatccttcacttgatgtcttgttttgttgatttacatgatatctctctaaaaagactcaaa 294  Q
    ||||| ||||||||  |||||||||||||||   ||||||||||| |||| |||||||||||||||    
T  26070648 tccttgatccttcatgtgatgtcttgttttgccaatttacatgatttctcactaaaaagactcaaa 26070583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 294
Target Start/End: Complemental strand, 20694808 - 20694749
Alignment:
Q  235 atccttcacttgatgtcttgttttgttgatttacatgatatctctctaaaaagactcaaa 294  Q
    ||||||||  |||||||||||||||  |||||||||||| |||  |||||||||||||||    
T  20694808 atccttcatatgatgtcttgttttgccgatttacatgatttcttactaaaaagactcaaa 20694749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 273
Target Start/End: Complemental strand, 22229973 - 22229935
Alignment:
Q  235 atccttcacttgatgtcttgttttgttgatttacatgat 273  Q
    ||||||||| |||||||||| ||||||||||||||||||    
T  22229973 atccttcacgtgatgtcttgatttgttgatttacatgat 22229935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 294
Target Start/End: Original strand, 24279582 - 24279631
Alignment:
Q  245 tgatgtcttgttttgttgatttacatgatatctctctaaaaagactcaaa 294  Q
    |||||||||||||||| |||||| ||||| |||| |||||| ||||||||    
T  24279582 tgatgtcttgttttgtcgatttatatgatttctcactaaaatgactcaaa 24279631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 294
Target Start/End: Complemental strand, 24382632 - 24382583
Alignment:
Q  245 tgatgtcttgttttgttgatttacatgatatctctctaaaaagactcaaa 294  Q
    |||||||||||||||| |||||| ||||| |||| |||||| ||||||||    
T  24382632 tgatgtcttgttttgtcgatttatatgatttctcactaaaatgactcaaa 24382583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 273
Target Start/End: Original strand, 12339954 - 12339998
Alignment:
Q  229 tccttaatccttcacttgatgtcttgttttgttgatttacatgat 273  Q
    ||||| ||||||||| |||||||||| |||||||||||| |||||    
T  12339954 tccttgatccttcacgtgatgtcttgatttgttgatttatatgat 12339998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 273
Target Start/End: Original strand, 25075252 - 25075296
Alignment:
Q  229 tccttaatccttcacttgatgtcttgttttgttgatttacatgat 273  Q
    ||||| ||||||||| |||||||||| |||| |||||||||||||    
T  25075252 tccttgatccttcacatgatgtcttgatttgatgatttacatgat 25075296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 273
Target Start/End: Original strand, 25133221 - 25133265
Alignment:
Q  229 tccttaatccttcacttgatgtcttgttttgttgatttacatgat 273  Q
    ||||| ||||||||| |||||||||| |||| |||||||||||||    
T  25133221 tccttgatccttcacatgatgtcttgatttgatgatttacatgat 25133265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 303
Target Start/End: Original strand, 17415109 - 17415178
Alignment:
Q  235 atccttcacttgatgtcttgttttgttgatttacatgatatctctctaaaaagactc-aaacacctatga 303  Q
    ||||||||| |||||||||||||||  |||||||| ||| |||| |||||||||||| ||||||||||||    
T  17415109 atccttcacgtgatgtcttgttttgccgatttacacgatttctcactaaaaagactcaaaacacctatga 17415178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 235 - 302
Target Start/End: Complemental strand, 19541205 - 19541137
Alignment:
Q  235 atccttcacttgatgtcttgttttgttgatttacatgatatctctctaaaaagactc-aaacacctatg 302  Q
    ||||||||||||||||||| |||||  |||||||||||| |||| ||| |||||||| |||||||||||    
T  19541205 atccttcacttgatgtcttattttgccgatttacatgatttctcactagaaagactcaaaacacctatg 19541137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 229 - 290
Target Start/End: Complemental strand, 18818871 - 18818810
Alignment:
Q  229 tccttaatccttcacttgatgtcttgttttgttgatttacatgatatctctctaaaaagact 290  Q
    ||||||||||||||| ||||| |||||||||  |||||||||||| ||||  ||||||||||    
T  18818871 tccttaatccttcacgtgatgccttgttttgccgatttacatgatttctcaataaaaagact 18818810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 273
Target Start/End: Complemental strand, 1733266 - 1733222
Alignment:
Q  229 tccttaatccttcacttgatgtcttgttttgttgatttacatgat 273  Q
    ||||||||||||||| |||||||||| |||| |||||||||||||    
T  1733266 tccttaatccttcacgtgatgtcttgctttgatgatttacatgat 1733222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 294
Target Start/End: Complemental strand, 39730620 - 39730556
Alignment:
Q  230 ccttaatccttcacttgatgtcttgttttgttgatttacatgatatctctctaaaaagactcaaa 294  Q
    |||| ||||||||  ||||||||||||||| ||||||| ||||| |||| ||||||| |||||||    
T  39730620 ccttgatccttcatgtgatgtcttgttttgctgatttatatgatttctcactaaaaatactcaaa 39730556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 231 - 294
Target Start/End: Complemental strand, 1732723 - 1732660
Alignment:
Q  231 cttaatccttcacttgatgtcttgttttgttgatttacatgatatctctctaaaaagactcaaa 294  Q
    ||||||||||||  ||||||||||||||||  ||||||||||| |||  | |||||||||||||    
T  1732723 cttaatccttcatgtgatgtcttgttttgtcaatttacatgatttcttaccaaaaagactcaaa 1732660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 294
Target Start/End: Original strand, 18236249 - 18236308
Alignment:
Q  235 atccttcacttgatgtcttgttttgttgatttacatgatatctctctaaaaagactcaaa 294  Q
    ||||||||  |||||||||||||||  || ||||||||| |||| |||||||||||||||    
T  18236249 atccttcatgtgatgtcttgttttgccgagttacatgatttctcactaaaaagactcaaa 18236308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 294
Target Start/End: Original strand, 15454479 - 15454544
Alignment:
Q  229 tccttaatccttcacttgatgtcttgttttgttgatttacatgatatctctctaaaaagactcaaa 294  Q
    ||||| ||||||||  ||||||||||||||| | ||||||| ||| |||| ||||||| |||||||    
T  15454479 tccttgatccttcatgtgatgtcttgttttgctaatttacacgatttctcactaaaaaaactcaaa 15454544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 229 - 294
Target Start/End: Complemental strand, 26102231 - 26102166
Alignment:
Q  229 tccttaatccttcacttgatgtcttgttttgttgatttacatgatatctctctaaaaagactcaaa 294  Q
    ||||| ||| ||||| |||||||||||||||| ||||| || |||||||| |||||||||||||||    
T  26102231 tccttgatcattcacgtgatgtcttgttttgtcgatttgcacgatatctcactaaaaagactcaaa 26102166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 87
Target Start/End: Original strand, 13062195 - 13062238
Alignment:
Q  44 tttggaaagaatatgcacactctttaaggctgcagcataatgga 87  Q
    |||||||||||| |||||||||||||||||||||||| ||||||    
T  13062195 tttggaaagaatctgcacactctttaaggctgcagcagaatgga 13062238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 80
Target Start/End: Complemental strand, 39332220 - 39332184
Alignment:
Q  44 tttggaaagaatatgcacactctttaaggctgcagca 80  Q
    |||||||||||| ||||||||||||||||||||||||    
T  39332220 tttggaaagaatctgcacactctttaaggctgcagca 39332184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 303
Target Start/End: Complemental strand, 18795339 - 18795280
Alignment:
Q  245 tgatgtcttgttttgttgatttacatgatatctctctaaaaagactc-aaacacctatga 303  Q
    ||||||||||||||| ||||||||| ||| |||| |||||| ||||| ||||||||||||    
T  18795339 tgatgtcttgttttgctgatttacacgatttctcactaaaatgactcaaaacacctatga 18795280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 294
Target Start/End: Complemental strand, 25126654 - 25126589
Alignment:
Q  229 tccttaatccttcacttgatgtcttgttttgttgatttacatgatatctctctaaaaagactcaaa 294  Q
    |||| |||||||||| ||||||||| ||||  | ||||||||||| ||||  ||||||||||||||    
T  25126654 tcctcaatccttcacgtgatgtcttatttttctaatttacatgatttctcattaaaaagactcaaa 25126589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 273
Target Start/End: Original strand, 8247597 - 8247641
Alignment:
Q  229 tccttaatccttcacttgatgtcttgttttgttgatttacatgat 273  Q
    ||||| ||| ||||| |||||||||| ||||||||||||||||||    
T  8247597 tccttgatctttcacgtgatgtcttgatttgttgatttacatgat 8247641  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 294
Target Start/End: Original strand, 26854266 - 26854323
Alignment:
Q  235 atccttcacttgatgtcttgttttgttgatttacatgatatctctctaaaaagactcaaa 294  Q
    ||||||||||| |||||||||||||  | ||||||||  || ||||||||||||||||||    
T  26854266 atccttcacttaatgtcttgttttgccggtttacatg--atttctctaaaaagactcaaa 26854323  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 273
Target Start/End: Complemental strand, 30781935 - 30781891
Alignment:
Q  229 tccttaatccttcacttgatgtcttgttttgttgatttacatgat 273  Q
    ||||| ||||||||| |||||||||| |||| |||||||||||||    
T  30781935 tccttgatccttcacatgatgtcttgatttgatgatttacatgat 30781891  T

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Target: scaffold0190 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 234 - 273
Target Start/End: Original strand, 11643 - 11682
Alignment:
Q  234 aatccttcacttgatgtcttgttttgttgatttacatgat 273  Q
    ||||||| ||||||||||||||||||| ||||||||||||    
T  11643 aatccttaacttgatgtcttgttttgtcgatttacatgat 11682  T

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Target: scaffold0065 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 302
Target Start/End: Complemental strand, 12414 - 12344
Alignment:
Q  234 aatccttcacttgatgtcttgttttgttgatttacatgatatctctcta-aaaagactc-aaacacctatg 302  Q
    |||||||||| |||||||||| ||||| |||||||||||| |||| ||| |||| |||| |||||||||||    
T  12414 aatccttcacgtgatgtcttgatttgtcgatttacatgatttctcactacaaaacactcaaaacacctatg 12344  T

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Target: scaffold0337 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 278
Target Start/End: Complemental strand, 1978 - 1934
Alignment:
Q  234 aatccttcacttgatgtcttgttttgttgatttacatgatatctc 278  Q
    |||||||||| |||||||||| |||||||||||||| ||| ||||    
T  1978 aatccttcacgtgatgtcttgatttgttgatttacaggatttctc 1934  T

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Target: scaffold0171 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 273
Target Start/End: Complemental strand, 6370 - 6326
Alignment:
Q  229 tccttaatccttcacttgatgtcttgttttgttgatttacatgat 273  Q
    ||||| ||||||||| |||||||||| ||||| ||||||||||||    
T  6370 tccttgatccttcacgtgatgtcttgatttgtcgatttacatgat 6326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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