View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0942_high_8 (Length: 591)

Name: NF0942_high_8
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0942_high_8
NF0942_high_8
[»] chr7 (12 HSPs)
chr7 (310-588)||(39569425-39569703)
chr7 (316-588)||(39344106-39344378)
chr7 (317-588)||(39358682-39358953)
chr7 (318-588)||(39552595-39552865)
chr7 (317-588)||(39543371-39543642)
chr7 (312-588)||(39332836-39333112)
chr7 (30-238)||(39949376-39949601)
chr7 (30-238)||(39953768-39953993)
chr7 (274-310)||(39949304-39949340)
chr7 (274-310)||(39953696-39953732)
chr7 (467-538)||(39585472-39585543)
chr7 (467-535)||(39579142-39579210)
[»] chr3 (11 HSPs)
chr3 (72-238)||(22361131-22361297)
chr3 (72-238)||(22365518-22365684)
chr3 (30-76)||(22361070-22361116)
chr3 (30-76)||(22365457-22365503)
chr3 (82-188)||(23397192-23397298)
chr3 (274-313)||(36028804-36028843)
chr3 (274-310)||(22361333-22361369)
chr3 (274-308)||(22365720-22365754)
chr3 (205-238)||(36028879-36028912)
chr3 (274-311)||(28784835-28784872)
chr3 (274-310)||(5353344-5353380)
[»] chr8 (11 HSPs)
chr8 (72-238)||(30045233-30045403)
chr8 (72-238)||(30049636-30049806)
chr8 (74-238)||(7162594-7162758)
chr8 (30-76)||(30045172-30045218)
chr8 (30-76)||(30049575-30049621)
chr8 (274-313)||(30049843-30049882)
chr8 (30-76)||(7162528-7162574)
chr8 (274-311)||(30045440-30045477)
chr8 (274-307)||(7162795-7162828)
chr8 (274-310)||(44732164-44732200)
chr8 (274-310)||(44734477-44734513)
[»] chr4 (8 HSPs)
chr4 (72-238)||(3941491-3941661)
chr4 (72-238)||(3945890-3946060)
chr4 (30-76)||(3941430-3941476)
chr4 (30-76)||(3945829-3945875)
chr4 (274-311)||(3946092-3946129)
chr4 (274-310)||(3941693-3941729)
chr4 (274-312)||(22804932-22804970)
chr4 (471-543)||(2882142-2882214)
[»] chr5 (7 HSPs)
chr5 (72-238)||(200603-200769)
chr5 (72-238)||(196224-196390)
chr5 (30-76)||(196405-196451)
chr5 (30-76)||(200784-200830)
chr5 (274-310)||(196152-196188)
chr5 (274-310)||(200538-200574)
chr5 (274-313)||(32800639-32800678)
[»] chr2 (6 HSPs)
chr2 (79-238)||(1330688-1330847)
chr2 (34-76)||(1330624-1330666)
chr2 (274-312)||(1330883-1330921)
chr2 (510-543)||(44238464-44238497)
chr2 (274-310)||(45336580-45336616)
chr2 (274-310)||(45338892-45338928)
[»] scaffold1453 (2 HSPs)
scaffold1453 (131-238)||(1-108)
scaffold1453 (274-310)||(144-180)
[»] chr1 (1 HSPs)
chr1 (274-310)||(1550478-1550514)


Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 310 - 588
Target Start/End: Original strand, 39569425 - 39569703
Alignment:
Q  310 aaaatctgaacctgtccattcgatccttaagtttgagcagaaacttctcattgtcctcttcagcaagtctaacaagtctttcaagcaaatcttttctttc 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39569425 aaaatctgaacctgtccattcgatccttaagtttgagcagaaacttctcattgtcctcttcagcaagtctaacaagtctttcaagcaaatcttttctttc 39569524  T
Q  410 ttgcagcccaagcttctcaacatcaatctcaacggcttccccttgaagggaagtgagcaaacctttcctcaaacgtgcaaaagtaggaagattctgaatt 509  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  39569525 ttgcagcccaagcttctcaatatcaatctcaacggcttccccttgaagtgaagtgagcaaacctttcctcaaacgcgcaaaagtaggaagattctgaatt 39569624  T
Q  510 gcagcccacttaagagcttcttcatcatcttcttggtgaaaagaatttgaaaaaatctcagctgcatctctgctcctcc 588  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  39569625 gcagcccacttaagagcttcttcatcatcttcttggtgaaaagaatttgaaaaaatctcagctgcatcactgctcctcc 39569703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 316 - 588
Target Start/End: Complemental strand, 39344378 - 39344106
Alignment:
Q  316 tgaacctgtccattcgatccttaagtttgagcagaaacttctcattgtcctcttcagcaagtctaacaagtctttcaagcaaatcttttctttcttgcag 415  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||     
T  39344378 tgaacctgtccatgcgatccttaagtttgagcagaaacttctcattgtcctcttcagcaagtctaacaagtctttcaagcaaatcttttcttacttgcaa 39344279  T
Q  416 cccaagcttctcaacatcaatctcaacggcttccccttgaagggaagtgagcaaacctttcctcaaacgtgcaaaagtaggaagattctgaattgcagcc 515  Q
    |||||||||||||||||||| |||   ||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  39344278 cccaagcttctcaacatcaacctcggtggcttccccttgaagtgaagtaagcaaacctttcctcaaacgttcaaaagtaggaagtttctgaattgcagcc 39344179  T
Q  516 cacttaagagcttcttcatcatcttcttggtgaaaagaatttgaaaaaatctcagctgcatctctgctcctcc 588  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||| ||||||    
T  39344178 catttaagagcttcttcatcatcttcttggtgaaaagaatttgaaaaaatctgagcagcatcactgttcctcc 39344106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 317 - 588
Target Start/End: Complemental strand, 39358953 - 39358682
Alignment:
Q  317 gaacctgtccattcgatccttaagtttgagcagaaacttctcattgtcctcttcagcaagtctaacaagtctttcaagcaaatcttttctttcttgcagc 416  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |    
T  39358953 gaacctatccattcgatccttaagtttgagcagaaacttctcattgtcctcttcagcaagtctaacaagtctttcaagtaaatcttttctttcttgcaac 39358854  T
Q  417 ccaagcttctcaacatcaatctcaacggcttccccttgaagggaagtgagcaaacctttcctcaaacgtgcaaaagtaggaagattctgaattgcagccc 516  Q
    ||||||||||||||||||| |||   ||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  39358853 ccaagcttctcaacatcaacctcggtggcttccccttgaagtgaagtaagcaaacctttcctcaaacgttcaaaagtaggaagcttctgaattgcagccc 39358754  T
Q  517 acttaagagcttcttcatcatcttcttggtgaaaagaatttgaaaaaatctcagctgcatctctgctcctcc 588  Q
    | ||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||| ||| ||||||    
T  39358753 atttaagagattcttcatcatcttcttggtgaaaagaatttgaaaagatctcagcagcatcactgttcctcc 39358682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 318 - 588
Target Start/End: Original strand, 39552595 - 39552865
Alignment:
Q  318 aacctgtccattcgatccttaagtttgagcagaaacttctcattgtcctcttcagcaagtctaacaagtctttcaagcaaatcttttctttcttgcagcc 417  Q
    |||||||| ||||||||||| |||||||||| |||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||    
T  39552595 aacctgtcgattcgatccttgagtttgagcaaaaacttttcattgtcttcttcagcaagtctaacaagtctttcaagtaaatcttttctttcttgcaacc 39552694  T
Q  418 caagcttctcaacatcaatctcaacggcttccccttgaagggaagtgagcaaacctttcctcaaacgtgcaaaagtaggaagattctgaattgcagccca 517  Q
    |||| ||||||||||| ||||||  ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  39552695 caaggttctcaacatcgatctcagtggcttccccttgaagtgaagtgagcaaacctttcctcaaacgttcaaaagtaggaagtttctgaattgcagccca 39552794  T
Q  518 cttaagagcttcttcatcatcttcttggtgaaaagaatttgaaaaaatctcagctgcatctctgctcctcc 588  Q
     ||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||| ||| ||||||    
T  39552795 tttaagagcttcttcatcatcttcttggtggaaagaatttgaaaagatctcagcagcatcactgttcctcc 39552865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 317 - 588
Target Start/End: Original strand, 39543371 - 39543642
Alignment:
Q  317 gaacctgtccattcgatccttaagtttgagcagaaacttctcattgtcctcttcagcaagtctaacaagtctttcaagcaaatcttttctttcttgcagc 416  Q
    ||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |    
T  39543371 gaacctgtcgattcgatccttgagtttgagcaaaaacttctcattgtcctcttcagcaagtctaacaagtctttcaagtaaatcttttctttcttgcaac 39543470  T
Q  417 ccaagcttctcaacatcaatctcaacggcttccccttgaagggaagtgagcaaacctttcctcaaacgtgcaaaagtaggaagattctgaattgcagccc 516  Q
    ||||||||||||||||| ||||||  |||||||||||| ||  ||| ||||||||||||||| |||||||||||||||||||| |||||||| |||||||    
T  39543471 ccaagcttctcaacatcgatctcagtggcttccccttgcagcaaagagagcaaacctttccttaaacgtgcaaaagtaggaagtttctgaatggcagccc 39543570  T
Q  517 acttaagagcttcttcatcatcttcttggtgaaaagaatttgaaaaaatctcagctgcatctctgctcctcc 588  Q
    | ||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||| ||| ||||||    
T  39543571 atttaagagcttcttcatcatcttcttggcgaaaagaattagaaaaaatctcagcagcatcactgttcctcc 39543642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 312 - 588
Target Start/End: Complemental strand, 39333112 - 39332836
Alignment:
Q  312 aatctgaacctgtccattcgatccttaagtttgagcagaaacttctcattgtcctcttcagcaagtctaacaagtctttcaagcaaatcttttctttctt 411  Q
    |||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||  ||||||    
T  39333112 aatccgaacctgtctattcgatccttaagtttgagcagaaacttttcattgtcctcttcagcaagtctaacaagtctttcgagcaaatctttcttttctt 39333013  T
Q  412 gcagcccaagcttctcaacatcaatctcaacggcttccccttgaagggaagtgagcaaacctttcctcaaacgtgcaaaagtaggaagattctgaattgc 511  Q
    ||| |||||| ||||||||||||||||| | || | | |||||||| ||||||||||||||||||||||||||| |||||||||||||  ||||||||||    
T  39333012 gcatcccaaggttctcaacatcaatctcgatggttccaccttgaagtgaagtgagcaaacctttcctcaaacgttcaaaagtaggaaggatctgaattgc 39332913  T
Q  512 agcccacttaagagcttcttcatcatcttcttggtgaaaagaatttgaaaaaatctcagctgcatctctgctcctcc 588  Q
    |||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||| ||| ||||||    
T  39332912 agcccatttaagagcttcttcatcatctccttggtggaaagaatttgaaaaaatctcggctgcatcactgttcctcc 39332836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 30 - 238
Target Start/End: Complemental strand, 39949601 - 39949376
Alignment:
Q  30 actttattgcttatgtgtgtaattattttaacttgttttgttagtaagattat-ctgcacaagt----------------taagtaggtttatgtcatat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||                ||||||||||||||||||||    
T  39949601 actttattgcttatgtgtgtaattattttaacttgttttgttagtaaaactatgctgcacaagtaaggttatctgcaagttaagtaggtttatgtcatat 39949502  T
Q  113 gacatcagctaagcataggctgagtcattacttagtatttggctataagtatgtaagaaggatgtatggatggtatgtatcaaatttgcagcatagtaaa 212  Q
    |||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||| ||  |||||||||||||||||||    
T  39949501 gacatcagctaaacataggctgagttattactaagtatttggctataagtatgtaagaaggatgtatggatgatatataaaaaatttgcagcatagtaaa 39949402  T
Q  213 cattgttattgtccctttctcttcca 238  Q
    ||||||||||||||||||||||||||    
T  39949401 cattgttattgtccctttctcttcca 39949376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 30 - 238
Target Start/End: Complemental strand, 39953993 - 39953768
Alignment:
Q  30 actttattgcttatgtgtgtaattattttaacttgttttgttagtaagattat-ctgcacaagt----------------taagtaggtttatgtcatat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||                ||||||||||||||||||||    
T  39953993 actttattgcttatgtgtgtaattattttaacttgttttgttagtaaaactatgctgcacaagtaaggttatctgcaagttaagtaggtttatgtcatat 39953894  T
Q  113 gacatcagctaagcataggctgagtcattacttagtatttggctataagtatgtaagaaggatgtatggatggtatgtatcaaatttgcagcatagtaaa 212  Q
    |||||||||||| ||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||| ||  |||||||||||||||||||    
T  39953893 gacatcagctaaacatagactgagttattactaagtatttggctataagtatgtaagaaggatgtatggatgatatataaaaaatttgcagcatagtaaa 39953794  T
Q  213 cattgttattgtccctttctcttcca 238  Q
    ||||||||||||||||||||||||||    
T  39953793 cattgttattgtccctttctcttcca 39953768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 310
Target Start/End: Complemental strand, 39949340 - 39949304
Alignment:
Q  274 gagcttattgcttctgctgccattacaaaagctaaca 310  Q
    |||||||||||||||||||||||||||||||||||||    
T  39949340 gagcttattgcttctgctgccattacaaaagctaaca 39949304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 310
Target Start/End: Complemental strand, 39953732 - 39953696
Alignment:
Q  274 gagcttattgcttctgctgccattacaaaagctaaca 310  Q
    |||||||||||||||||||||||||||||||||||||    
T  39953732 gagcttattgcttctgctgccattacaaaagctaaca 39953696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 467 - 538
Target Start/End: Original strand, 39585472 - 39585543
Alignment:
Q  467 caaacctttcctcaaacgtgcaaaagtaggaagattctgaattgcagcccacttaagagcttcttcatcatc 538  Q
    ||||||| ||||||| ||||||| ||| |||||  |||||||||||||||| || | ||| |||||||||||    
T  39585472 caaacctctcctcaagcgtgcaacagtcggaagcctctgaattgcagcccatttcaaagcctcttcatcatc 39585543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 467 - 535
Target Start/End: Original strand, 39579142 - 39579210
Alignment:
Q  467 caaacctttcctcaaacgtgcaaaagtaggaagattctgaattgcagcccacttaagagcttcttcatc 535  Q
    ||||||| ||||||| ||||||| ||| |||||  |||||||||||||||| || | ||| ||||||||    
T  39579142 caaacctctcctcaagcgtgcaacagtcggaagcctctgaattgcagcccatttcaaagcctcttcatc 39579210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 159; Significance: 2e-84; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 72 - 238
Target Start/End: Original strand, 22361131 - 22361297
Alignment:
Q  72 agtaagattatctgcacaagttaagtaggtttatgtcatatgacatcagctaagcataggctgagtcattacttagtatttggctataagtatgtaagaa 171  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  22361131 agtaaggttatctgcacaagttaagtaggtttatgtcatatgacatcagctaagcataggctgagtcattactaagtatttggctataagtatgtaagaa 22361230  T
Q  172 ggatgtatggatggtatgtatcaaatttgcagcatagtaaacattgttattgtccctttctcttcca 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22361231 ggatgtatggatggtatgtatcaaatttgcagcatagtaaacattgttattgtccctttctcttcca 22361297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 72 - 238
Target Start/End: Original strand, 22365518 - 22365684
Alignment:
Q  72 agtaagattatctgcacaagttaagtaggtttatgtcatatgacatcagctaagcataggctgagtcattacttagtatttggctataagtatgtaagaa 171  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  22365518 agtaaggttatctgcacaagttaagtaggtttatgtcatatgacatcaactaagcataggctgagtcattactaagtatttggctataagtatgtaagaa 22365617  T
Q  172 ggatgtatggatggtatgtatcaaatttgcagcatagtaaacattgttattgtccctttctcttcca 238  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  22365618 ggatgtatggatgatatgtatcaaatttgcagtatagtaaacattgttattgtccctttctcttcca 22365684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 22361070 - 22361116
Alignment:
Q  30 actttattgcttatgtgtgtaattattttaacttgttttgttagtaa 76  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  22361070 actttattgcttatgtgtgtaattattttaacttgttttgttagtaa 22361116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 22365457 - 22365503
Alignment:
Q  30 actttattgcttatgtgtgtaattattttaacttgttttgttagtaa 76  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  22365457 actttattgcttatgtgtgtaattattttaacttgttttgttagtaa 22365503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 82 - 188
Target Start/End: Complemental strand, 23397298 - 23397192
Alignment:
Q  82 tctgcacaagttaagtaggtttatgtcatatgacatcagctaagcataggctgagtcattacttagtatttggctataagtatgtaagaaggatgtatgg 181  Q
    |||| ||||||||| |||||||||||| |||||||||| | ||| ||| | |  ||||||||| |||||||| || ||| |||||||||| |||||||||    
T  23397298 tctgtacaagttaaataggtttatgtcgtatgacatcaacaaagtataagttatgtcattactaagtatttgactctaaatatgtaagaaagatgtatgg 23397199  T
Q  182 atggtat 188  Q
    |||||||    
T  23397198 atggtat 23397192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 274 - 313
Target Start/End: Complemental strand, 36028843 - 36028804
Alignment:
Q  274 gagcttattgcttctgctgccattacaaaagctaacaaaa 313  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  36028843 gagcttattgcttctgctgccattacaaaagctaacaaaa 36028804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 310
Target Start/End: Original strand, 22361333 - 22361369
Alignment:
Q  274 gagcttattgcttctgctgccattacaaaagctaaca 310  Q
    |||||||||||||||||||||||||||||||||||||    
T  22361333 gagcttattgcttctgctgccattacaaaagctaaca 22361369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 274 - 308
Target Start/End: Original strand, 22365720 - 22365754
Alignment:
Q  274 gagcttattgcttctgctgccattacaaaagctaa 308  Q
    |||||||||||||||||||||||||||||||||||    
T  22365720 gagcttattgcttctgctgccattacaaaagctaa 22365754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 205 - 238
Target Start/End: Complemental strand, 36028912 - 36028879
Alignment:
Q  205 atagtaaacattgttattgtccctttctcttcca 238  Q
    ||||||||||||||||||||||||||||||||||    
T  36028912 atagtaaacattgttattgtccctttctcttcca 36028879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 311
Target Start/End: Original strand, 28784835 - 28784872
Alignment:
Q  274 gagcttattgcttctgctgccattacaaaagctaacaa 311  Q
    ||||||||||||||||||||| || |||||||||||||    
T  28784835 gagcttattgcttctgctgcctttgcaaaagctaacaa 28784872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 274 - 310
Target Start/End: Complemental strand, 5353380 - 5353344
Alignment:
Q  274 gagcttattgcttctgctgccattacaaaagctaaca 310  Q
    ||||||||||||||||||||| || ||||||||||||    
T  5353380 gagcttattgcttctgctgcctttgcaaaagctaaca 5353344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 154; Significance: 2e-81; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 72 - 238
Target Start/End: Original strand, 30045233 - 30045403
Alignment:
Q  72 agtaagattatctgcacaagttaagtaggtttatgtcatat----gacatcagctaagcataggctgagtcattacttagtatttggctataagtatgta 167  Q
    |||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30045233 agtaagattatctgcacaagttaagtaggtttatgtcatatatatgacatcagctaagcataggctgagtcattacttagtatttggctataagtatgta 30045332  T
Q  168 agaaggatgtatggatggtatgtatcaaatttgcagcatagtaaacattgttattgtccctttctcttcca 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30045333 agaaggatgtatggatggtatgtatcaaatttgcagcatagtaaacattgttattgtccctttctcttcca 30045403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 72 - 238
Target Start/End: Original strand, 30049636 - 30049806
Alignment:
Q  72 agtaagattatctgcacaagttaagtaggtttatgtcatat----gacatcagctaagcataggctgagtcattacttagtatttggctataagtatgta 167  Q
    |||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30049636 agtaagattatctgcacaagttaagtaggtttatgtcatatatatgacatcagctaagcataggctgagtcattacttagtatttggctataagtatgta 30049735  T
Q  168 agaaggatgtatggatggtatgtatcaaatttgcagcatagtaaacattgttattgtccctttctcttcca 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30049736 agaaggatgtatggatggtatgtatcaaatttgcagcatagtaaacattgttattgtccctttctcttcca 30049806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 74 - 238
Target Start/End: Original strand, 7162594 - 7162758
Alignment:
Q  74 taagattatctgcacaagttaagtaggtttatgtcatatgacatcagctaagcataggctgagtcattacttagtatttggctataagtatgtaagaagg 173  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7162594 taaggttatctgcacaagttaagcaggtttatgtcatatgacatcagctaagcataggctgagtcattactaagtatttggctataagtatgtaagaagg 7162693  T
Q  174 atgtatggatggtatgtatcaaatttgcagcatagtaaacattgttattgtccctttctcttcca 238  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  7162694 atgtatggatggtttgtattaaatttgcagcatagtaaacattgttattgtccctttctcttcca 7162758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 30045172 - 30045218
Alignment:
Q  30 actttattgcttatgtgtgtaattattttaacttgttttgttagtaa 76  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  30045172 actttattgcttatgtgtgtaattattttaacttgttttgttagtaa 30045218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 30049575 - 30049621
Alignment:
Q  30 actttattgcttatgtgtgtaattattttaacttgttttgttagtaa 76  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  30049575 actttattgcttatgtgtgtaattattttaacttgttttgttagtaa 30049621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 274 - 313
Target Start/End: Original strand, 30049843 - 30049882
Alignment:
Q  274 gagcttattgcttctgctgccattacaaaagctaacaaaa 313  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  30049843 gagcttattgcttctgctgccattacaaaagctaacaaaa 30049882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 7162528 - 7162574
Alignment:
Q  30 actttattgcttatgtgtgtaattattttaacttgttttgttagtaa 76  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||    
T  7162528 actttattgcttatgtgtgtaatcattttaacttattttgttagtaa 7162574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 274 - 311
Target Start/End: Original strand, 30045440 - 30045477
Alignment:
Q  274 gagcttattgcttctgctgccattacaaaagctaacaa 311  Q
    ||||||||||||||||||||||||||||||||||||||    
T  30045440 gagcttattgcttctgctgccattacaaaagctaacaa 30045477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 274 - 307
Target Start/End: Original strand, 7162795 - 7162828
Alignment:
Q  274 gagcttattgcttctgctgccattacaaaagcta 307  Q
    ||||||||||||||||||||||||||||||||||    
T  7162795 gagcttattgcttctgctgccattacaaaagcta 7162828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 274 - 310
Target Start/End: Original strand, 44732164 - 44732200
Alignment:
Q  274 gagcttattgcttctgctgccattacaaaagctaaca 310  Q
    ||||||||||||||||||||| || ||||||||||||    
T  44732164 gagcttattgcttctgctgcctttgcaaaagctaaca 44732200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 274 - 310
Target Start/End: Original strand, 44734477 - 44734513
Alignment:
Q  274 gagcttattgcttctgctgccattacaaaagctaaca 310  Q
    ||||||||||||||||||||| || ||||||||||||    
T  44734477 gagcttattgcttctgctgcctttgcaaaagctaaca 44734513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 154; Significance: 2e-81; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 72 - 238
Target Start/End: Original strand, 3941491 - 3941661
Alignment:
Q  72 agtaagattatctgcacaagttaagtaggtttatgtcatat----gacatcagctaagcataggctgagtcattacttagtatttggctataagtatgta 167  Q
    |||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3941491 agtaagattatctgcacaagttaagtaggtttatgtcatatatatgacatcagctaagcataggctgagtcattacttagtatttggctataagtatgta 3941590  T
Q  168 agaaggatgtatggatggtatgtatcaaatttgcagcatagtaaacattgttattgtccctttctcttcca 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3941591 agaaggatgtatggatggtatgtatcaaatttgcagcatagtaaacattgttattgtccctttctcttcca 3941661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 72 - 238
Target Start/End: Original strand, 3945890 - 3946060
Alignment:
Q  72 agtaagattatctgcacaagttaagtaggtttatgtcatat----gacatcagctaagcataggctgagtcattacttagtatttggctataagtatgta 167  Q
    |||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3945890 agtaagattatctgcacaagttaagtaggtttatgtcatatatatgacatcagctaagcataggctgagtcattacttagtatttggctataagtatgta 3945989  T
Q  168 agaaggatgtatggatggtatgtatcaaatttgcagcatagtaaacattgttattgtccctttctcttcca 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3945990 agaaggatgtatggatggtatgtatcaaatttgcagcatagtaaacattgttattgtccctttctcttcca 3946060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 3941430 - 3941476
Alignment:
Q  30 actttattgcttatgtgtgtaattattttaacttgttttgttagtaa 76  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  3941430 actttattgcttatgtgtgtaattattttaacttgttttgttagtaa 3941476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 3945829 - 3945875
Alignment:
Q  30 actttattgcttatgtgtgtaattattttaacttgttttgttagtaa 76  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  3945829 actttattgcttatgtgtgtaattattttaacttgttttgttagtaa 3945875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 274 - 311
Target Start/End: Original strand, 3946092 - 3946129
Alignment:
Q  274 gagcttattgcttctgctgccattacaaaagctaacaa 311  Q
    ||||||||||||||||||||||||||||||||||||||    
T  3946092 gagcttattgcttctgctgccattacaaaagctaacaa 3946129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 310
Target Start/End: Original strand, 3941693 - 3941729
Alignment:
Q  274 gagcttattgcttctgctgccattacaaaagctaaca 310  Q
    |||||||||||||||||||||||||||||||||||||    
T  3941693 gagcttattgcttctgctgccattacaaaagctaaca 3941729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 274 - 312
Target Start/End: Original strand, 22804932 - 22804970
Alignment:
Q  274 gagcttattgcttctgctgccattacaaaagctaacaaa 312  Q
    ||||||||||||||||||||| || ||||||||||||||    
T  22804932 gagcttattgcttctgctgcctttgcaaaagctaacaaa 22804970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 471 - 543
Target Start/End: Complemental strand, 2882214 - 2882142
Alignment:
Q  471 cctttcctcaaacgtgcaaaagtaggaagattctgaattgcagcccacttaagagcttcttcatcatcttctt 543  Q
    ||||||||||||||   | ||||||| || || | || ||||||||| |||||||||||||||||||| ||||    
T  2882214 cctttcctcaaacggttataagtagggagtttttcaagtgcagcccatttaagagcttcttcatcatcatctt 2882142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 151; Significance: 1e-79; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 72 - 238
Target Start/End: Complemental strand, 200769 - 200603
Alignment:
Q  72 agtaagattatctgcacaagttaagtaggtttatgtcatatgacatcagctaagcataggctgagtcattacttagtatttggctataagtatgtaagaa 171  Q
    |||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  200769 agtaaggttatctgcacaagttaagtaggtttacctcatatgacatcagctaagcataggctgagtcattactaagtatttggctataagtatgtaagaa 200670  T
Q  172 ggatgtatggatggtatgtatcaaatttgcagcatagtaaacattgttattgtccctttctcttcca 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  200669 ggatgtatggatggtatgtatcaaatttgcagcatagtaaacattgttattgtccctttctcttcca 200603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 72 - 238
Target Start/End: Complemental strand, 196390 - 196224
Alignment:
Q  72 agtaagattatctgcacaagttaagtaggtttatgtcatatgacatcagctaagcataggctgagtcattacttagtatttggctataagtatgtaagaa 171  Q
    |||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  196390 agtaaggttatctgcacgagttaagtaggtttacgtcatatgacatcagctaagcataggctgagtcattactaagtatttggctataagtatgtaagaa 196291  T
Q  172 ggatgtatggatggtatgtatcaaatttgcagcatagtaaacattgttattgtccctttctcttcca 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  196290 ggatgtatggatggtatgtatcaaatttgcagcatagtaaacattgttattgtctctttctcttcca 196224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 196451 - 196405
Alignment:
Q  30 actttattgcttatgtgtgtaattattttaacttgttttgttagtaa 76  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||    
T  196451 actttattgtttatgtgtgtaatcattttaacttgttttgttagtaa 196405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 200830 - 200784
Alignment:
Q  30 actttattgcttatgtgtgtaattattttaacttgttttgttagtaa 76  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||    
T  200830 actttattgtttatgtgtgtaatcattttaacttgttttgttagtaa 200784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 310
Target Start/End: Complemental strand, 196188 - 196152
Alignment:
Q  274 gagcttattgcttctgctgccattacaaaagctaaca 310  Q
    |||||||||||||||||||||||||||||||||||||    
T  196188 gagcttattgcttctgctgccattacaaaagctaaca 196152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 310
Target Start/End: Complemental strand, 200574 - 200538
Alignment:
Q  274 gagcttattgcttctgctgccattacaaaagctaaca 310  Q
    |||||||||||||||||| ||||||||||||||||||    
T  200574 gagcttattgcttctgctaccattacaaaagctaaca 200538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 274 - 313
Target Start/End: Original strand, 32800639 - 32800678
Alignment:
Q  274 gagcttattgcttctgctgccattacaaaagctaacaaaa 313  Q
    ||||||||||||||||||||| || |||||||||||||||    
T  32800639 gagcttattgcttctgctgcctttgcaaaagctaacaaaa 32800678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 132; Significance: 3e-68; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 79 - 238
Target Start/End: Original strand, 1330688 - 1330847
Alignment:
Q  79 ttatctgcacaagttaagtaggtttatgtcatatgacatcagctaagcataggctgagtcattacttagtatttggctataagtatgtaagaaggatgta 178  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||| | |||||||| ||||||||||||||||||||||||    
T  1330688 ttatctgcacaagttaagtaggtttatgtcatatgacatcagcaaagtataggttgagtcattagtaagtatttgactataagtatgtaagaaggatgta 1330787  T
Q  179 tggatggtatgtatcaaatttgcagcatagtaaacattgttattgtccctttctcttcca 238  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1330788 aggatggtatgtatcaaatttgcagcatagtaaacattgttattgtccctttctcttcca 1330847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 34 - 76
Target Start/End: Original strand, 1330624 - 1330666
Alignment:
Q  34 tattgcttatgtgtgtaattattttaacttgttttgttagtaa 76  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  1330624 tattgcttatgtgtgtaatcattttaacttgttttgttagtaa 1330666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 274 - 312
Target Start/End: Original strand, 1330883 - 1330921
Alignment:
Q  274 gagcttattgcttctgctgccattacaaaagctaacaaa 312  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  1330883 gagcttattgtttctgctgccattacaaaagctaacaaa 1330921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 543
Target Start/End: Original strand, 44238464 - 44238497
Alignment:
Q  510 gcagcccacttaagagcttcttcatcatcttctt 543  Q
    |||||||| |||||||||||||||||||||||||    
T  44238464 gcagcccatttaagagcttcttcatcatcttctt 44238497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 274 - 310
Target Start/End: Original strand, 45336580 - 45336616
Alignment:
Q  274 gagcttattgcttctgctgccattacaaaagctaaca 310  Q
    ||||||||||||||||||||| || ||||||||||||    
T  45336580 gagcttattgcttctgctgcctttgcaaaagctaaca 45336616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 274 - 310
Target Start/End: Original strand, 45338892 - 45338928
Alignment:
Q  274 gagcttattgcttctgctgccattacaaaagctaaca 310  Q
    ||||||||||||||||||||| || ||||||||||||    
T  45338892 gagcttattgcttctgctgcctttgcaaaagctaaca 45338928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1453 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: scaffold1453
Description:

Target: scaffold1453; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 131 - 238
Target Start/End: Original strand, 1 - 108
Alignment:
Q  131 gctgagtcattacttagtatttggctataagtatgtaagaaggatgtatggatggtatgtatcaaatttgcagcatagtaaacattgttattgtcccttt 230  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1 gctgagtcattactaagtatttggctataagtatgtaagaaggatgtatggatggtatgtatcaaatttgcagcatagtaaacattgttattgtcccttt 100  T
Q  231 ctcttcca 238  Q
    ||||||||    
T  101 ctcttcca 108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1453; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 310
Target Start/End: Original strand, 144 - 180
Alignment:
Q  274 gagcttattgcttctgctgccattacaaaagctaaca 310  Q
    |||||||||||||||||||||||||||||||||||||    
T  144 gagcttattgcttctgctgccattacaaaagctaaca 180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 274 - 310
Target Start/End: Original strand, 1550478 - 1550514
Alignment:
Q  274 gagcttattgcttctgctgccattacaaaagctaaca 310  Q
    ||||||||||||||||||||| || ||||||||||||    
T  1550478 gagcttattgcttctgctgcctttgcaaaagctaaca 1550514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University