View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0942_high_85 (Length: 293)

Name: NF0942_high_85
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0942_high_85
NF0942_high_85
[»] chr7 (2 HSPs)
chr7 (8-199)||(27776866-27777057)
chr7 (63-127)||(19741093-19741157)
[»] chr5 (2 HSPs)
chr5 (76-127)||(41218921-41218972)
chr5 (64-128)||(26472136-26472200)
[»] scaffold0164 (1 HSPs)
scaffold0164 (64-126)||(27146-27208)
[»] chr8 (1 HSPs)
chr8 (64-126)||(15193146-15193208)
[»] chr4 (5 HSPs)
chr4 (64-126)||(18254024-18254086)
chr4 (63-127)||(51764235-51764299)
chr4 (72-125)||(22643579-22643632)
chr4 (64-128)||(22176935-22176999)
chr4 (64-128)||(23167441-23167505)
[»] chr3 (3 HSPs)
chr3 (64-126)||(53978164-53978226)
chr3 (64-128)||(8836233-8836297)
chr3 (64-128)||(55310168-55310232)
[»] chr1 (2 HSPs)
chr1 (64-126)||(49641073-49641135)
chr1 (64-128)||(52777903-52777967)
[»] chr2 (2 HSPs)
chr2 (63-127)||(19481630-19481694)
chr2 (63-127)||(11337765-11337829)
[»] chr6 (2 HSPs)
chr6 (63-128)||(34309881-34309946)
chr6 (88-127)||(21320833-21320870)
[»] scaffold0329 (1 HSPs)
scaffold0329 (64-128)||(11232-11296)


Alignment Details
Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 8 - 199
Target Start/End: Complemental strand, 27777057 - 27776866
Alignment:
Q  8 tagcataggcacaaaaagagataggaatacgataatgaaacattaaggtccttgacacattgagaatatgttgatacttcctttcaaccaccccattttg 107  Q
    ||||||| | ||||||||||||||||||  |||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  27777057 tagcataagaacaaaaagagataggaatctgatattgaaatattaaggtccttgacacattgagaatatgttgatgcttcctttcaaccaccccattttg 27776958  T
Q  108 ttggggtgtttcaacacaagaaagttaatgtaaaatacccttacttctgtaaaaaagactcaaacataaattcttcacaattgtcatcagat 199  Q
    |||||||||||||||||||||||||||||| |||||||| || ||| ||||||| ||||||||||||||||||||| |||||||||||||||    
T  27776957 ttggggtgtttcaacacaagaaagttaatgcaaaataccatttcttttgtaaaatagactcaaacataaattcttctcaattgtcatcagat 27776866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 127
Target Start/End: Complemental strand, 19741157 - 19741093
Alignment:
Q  63 cacattgagaatatgttgatacttcctttcaaccaccccattttgttggggtgtttcaacacaag 127  Q
    |||||| ||||| ||||||| ||| |||||||| |||||||||||||| || || ||||||||||    
T  19741157 cacattaagaatgtgttgatgctttctttcaacaaccccattttgttgaggcgtctcaacacaag 19741093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 76 - 127
Target Start/End: Original strand, 41218921 - 41218972
Alignment:
Q  76 tgttgatacttcctttcaaccaccccattttgttggggtgtttcaacacaag 127  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  41218921 tgttgatgcttcctttcaaccaccccattttgttggggggtttcaacacaag 41218972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 26472200 - 26472136
Alignment:
Q  64 acattgagaatatgttgatacttcctttcaaccaccccattttgttggggtgtttcaacacaaga 128  Q
    ||||| ||||||||||||| ||| ||||||||    |||||||||||||| ||||||||||||||    
T  26472200 acattaagaatatgttgatgctttctttcaactctaccattttgttggggagtttcaacacaaga 26472136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 64 - 126
Target Start/End: Original strand, 27146 - 27208
Alignment:
Q  64 acattgagaatatgttgatacttcctttcaaccaccccattttgttggggtgtttcaacacaa 126  Q
    ||||| ||||||||||||| ||||||||||||   ||||||||||||||| ||||||||||||    
T  27146 acattaagaatatgttgatgcttcctttcaactctcccattttgttggggagtttcaacacaa 27208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 64 - 126
Target Start/End: Complemental strand, 15193208 - 15193146
Alignment:
Q  64 acattgagaatatgttgatacttcctttcaaccaccccattttgttggggtgtttcaacacaa 126  Q
    ||||| ||||||||||||| ||||||||||||   ||||||||||||||| ||||||||||||    
T  15193208 acattaagaatatgttgatgcttcctttcaactctcccattttgttggggagtttcaacacaa 15193146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 64 - 126
Target Start/End: Complemental strand, 18254086 - 18254024
Alignment:
Q  64 acattgagaatatgttgatacttcctttcaaccaccccattttgttggggtgtttcaacacaa 126  Q
    ||||| ||||||||||||| ||||||||||||   ||||||||||||||| ||||||||||||    
T  18254086 acattaagaatatgttgatgcttcctttcaactctcccattttgttggggagtttcaacacaa 18254024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 63 - 127
Target Start/End: Complemental strand, 51764299 - 51764235
Alignment:
Q  63 cacattgagaatatgttgatacttcctttcaaccaccccattttgttggggtgtttcaacacaag 127  Q
    |||||||||||| ||||||| ||| |||||||| |||||||||||||| || || ||||||||||    
T  51764299 cacattgagaatgtgttgattctttctttcaacaaccccattttgttgaggcgtctcaacacaag 51764235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 22643632 - 22643579
Alignment:
Q  72 aatatgttgatacttcctttcaaccaccccattttgttggggtgtttcaacaca 125  Q
    ||||||||||| ||| |||||||||  ||||||||||||||| |||||||||||    
T  22643632 aatatgttgatgctttctttcaaccctcccattttgttggggagtttcaacaca 22643579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 128
Target Start/End: Original strand, 22176935 - 22176999
Alignment:
Q  64 acattgagaatatgttgatacttcctttcaaccaccccattttgttggggtgtttcaacacaaga 128  Q
    ||||||||||||||||| |  |||||||| ||    |||||||||||||| ||||||||||||||    
T  22176935 acattgagaatatgttggtgtttcctttctactctaccattttgttggggagtttcaacacaaga 22176999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 128
Target Start/End: Original strand, 23167441 - 23167505
Alignment:
Q  64 acattgagaatatgttgatacttcctttcaaccaccccattttgttggggtgtttcaacacaaga 128  Q
    ||||||||||| ||||| | ||| ||||||||   ||||||||||||||| || |||||||||||    
T  23167441 acattgagaatgtgttggtgctttctttcaactctcccattttgttggggagtctcaacacaaga 23167505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 64 - 126
Target Start/End: Complemental strand, 53978226 - 53978164
Alignment:
Q  64 acattgagaatatgttgatacttcctttcaaccaccccattttgttggggtgtttcaacacaa 126  Q
    ||||| ||||||||||||| ||||||||||||   ||||||||||||||| ||||||||||||    
T  53978226 acattaagaatatgttgatgcttcctttcaactctcccattttgttggggagtttcaacacaa 53978164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 8836297 - 8836233
Alignment:
Q  64 acattgagaatatgttgatacttcctttcaaccaccccattttgttggggtgtttcaacacaaga 128  Q
    ||||| ||||||||||||| ||| ||||||||    |||||||||||||| ||||||||||||||    
T  8836297 acattaagaatatgttgatgctttctttcaactctaccattttgttggggagtttcaacacaaga 8836233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 55310232 - 55310168
Alignment:
Q  64 acattgagaatatgttgatacttcctttcaaccaccccattttgttggggtgtttcaacacaaga 128  Q
    ||||| ||||||| ||||| ||| ||||||||    |||||||||||||| ||||||||||||||    
T  55310232 acattaagaatatattgatgctttctttcaactctaccattttgttggggagtttcaacacaaga 55310168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 64 - 126
Target Start/End: Original strand, 49641073 - 49641135
Alignment:
Q  64 acattgagaatatgttgatacttcctttcaaccaccccattttgttggggtgtttcaacacaa 126  Q
    ||||| ||||||||||||| ||||||||||||   ||||||||||||||| ||||||||||||    
T  49641073 acattaagaatatgttgatgcttcctttcaactctcccattttgttggggagtttcaacacaa 49641135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 52777967 - 52777903
Alignment:
Q  64 acattgagaatatgttgatacttcctttcaaccaccccattttgttggggtgtttcaacacaaga 128  Q
    ||||||||||||||||| |  |||||||| ||    |||||||||||||| ||||||||||||||    
T  52777967 acattgagaatatgttggtgtttcctttctactctaccattttgttggggagtttcaacacaaga 52777903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 63 - 127
Target Start/End: Complemental strand, 19481694 - 19481630
Alignment:
Q  63 cacattgagaatatgttgatacttcctttcaaccaccccattttgttggggtgtttcaacacaag 127  Q
    |||||||||||| ||||||| ||| |||||||| |||||||||||||| || || ||||||||||    
T  19481694 cacattgagaatgtgttgatgctttctttcaacaaccccattttgttgaggcgtctcaacacaag 19481630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 127
Target Start/End: Complemental strand, 11337829 - 11337765
Alignment:
Q  63 cacattgagaatatgttgatacttcctttcaaccaccccattttgttggggtgtttcaacacaag 127  Q
    |||||||||||| ||||||| ||| ||||||||  ||||||||||||| || || ||||||||||    
T  11337829 cacattgagaatgtgttgatgctttctttcaacagccccattttgttgaggcgtctcaacacaag 11337765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 128
Target Start/End: Complemental strand, 34309946 - 34309881
Alignment:
Q  63 cacattgagaatatgttgatacttcctttcaaccaccccattttgttggggtgtttcaacacaaga 128  Q
    ||||||||| |||||||||| ||||||||| || |  ||||||||||| || || |||||||||||    
T  34309946 cacattgaggatatgttgatgcttcctttctacaataccattttgttgaggagtctcaacacaaga 34309881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 127
Target Start/End: Complemental strand, 21320870 - 21320833
Alignment:
Q  88 ctttcaaccaccccattttgttggggtgtttcaacacaag 127  Q
    |||||||||||||||||||||||||  |||||||||||||    
T  21320870 ctttcaaccaccccattttgttggg--gtttcaacacaag 21320833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 11296 - 11232
Alignment:
Q  64 acattgagaatatgttgatacttcctttcaaccaccccattttgttggggtgtttcaacacaaga 128  Q
    ||||||||||||||||| |  |||||||| ||    |||||||||||||| ||||||||||||||    
T  11296 acattgagaatatgttggtgtttcctttctactctaccattttgttggggagtttcaacacaaga 11232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University