View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0942_high_86 (Length: 285)

Name: NF0942_high_86
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0942_high_86
NF0942_high_86
[»] scaffold0360 (1 HSPs)
scaffold0360 (22-277)||(4690-4941)
[»] chr8 (10 HSPs)
chr8 (22-277)||(5840264-5840515)
chr8 (115-167)||(29490376-29490428)
chr8 (100-168)||(23961665-23961733)
chr8 (115-170)||(10028655-10028710)
chr8 (127-169)||(23768775-23768817)
chr8 (129-167)||(32029662-32029700)
chr8 (113-167)||(41424410-41424464)
chr8 (127-168)||(21136603-21136644)
chr8 (117-170)||(32029411-32029464)
chr8 (186-230)||(42941193-42941237)
[»] chr6 (8 HSPs)
chr6 (80-166)||(21969298-21969385)
chr6 (111-168)||(8446943-8447000)
chr6 (111-168)||(8455747-8455804)
chr6 (113-169)||(21394256-21394312)
chr6 (113-168)||(3960874-3960929)
chr6 (113-167)||(19122008-19122062)
chr6 (113-169)||(9530549-9530605)
chr6 (115-167)||(26330339-26330391)
[»] chr4 (10 HSPs)
chr4 (182-274)||(6350104-6350192)
chr4 (113-170)||(39051105-39051162)
chr4 (115-167)||(44137393-44137445)
chr4 (120-169)||(55264653-55264702)
chr4 (113-158)||(13302236-13302281)
chr4 (113-158)||(13432688-13432733)
chr4 (113-162)||(13432781-13432830)
chr4 (113-161)||(3692058-3692106)
chr4 (113-169)||(5162836-5162892)
chr4 (128-168)||(40942598-40942638)
[»] chr2 (5 HSPs)
chr2 (114-169)||(22191535-22191590)
chr2 (89-169)||(17184753-17184834)
chr2 (119-170)||(17672952-17673003)
chr2 (115-168)||(32014000-32014053)
chr2 (129-169)||(6511035-6511075)
[»] chr3 (11 HSPs)
chr3 (113-168)||(39840661-39840716)
chr3 (113-167)||(40472832-40472886)
chr3 (113-169)||(55447203-55447259)
chr3 (113-168)||(45965675-45965730)
chr3 (113-158)||(34763141-34763186)
chr3 (117-167)||(3910237-3910287)
chr3 (113-167)||(27812207-27812261)
chr3 (115-169)||(48338573-48338627)
chr3 (113-170)||(40860971-40861028)
chr3 (129-170)||(51862691-51862731)
chr3 (115-167)||(45965827-45965879)
[»] chr7 (7 HSPs)
chr7 (89-158)||(30935371-30935440)
chr7 (113-168)||(42709919-42709974)
chr7 (115-169)||(41008943-41008997)
chr7 (118-167)||(41008801-41008850)
chr7 (125-170)||(26752035-26752080)
chr7 (113-169)||(43669486-43669540)
chr7 (113-157)||(16830294-16830338)
[»] scaffold0154 (1 HSPs)
scaffold0154 (115-167)||(6243-6295)
[»] chr5 (9 HSPs)
chr5 (113-164)||(39643020-39643071)
chr5 (113-169)||(31046162-31046218)
chr5 (97-168)||(36184758-36184830)
chr5 (127-169)||(8285259-8285301)
chr5 (113-167)||(11275811-11275865)
chr5 (113-170)||(12640232-12640288)
chr5 (117-158)||(39174627-39174668)
chr5 (113-169)||(31051223-31051279)
chr5 (113-169)||(31066103-31066159)
[»] chr1 (8 HSPs)
chr1 (113-168)||(38783894-38783949)
chr1 (127-169)||(15395209-15395251)
chr1 (113-170)||(8792969-8793026)
chr1 (115-167)||(1818406-1818458)
chr1 (113-169)||(28504713-28504769)
chr1 (114-167)||(27293283-27293336)
chr1 (113-158)||(38576576-38576621)
chr1 (113-169)||(46410844-46410900)
[»] scaffold0022 (1 HSPs)
scaffold0022 (113-170)||(122561-122618)
[»] scaffold0066 (1 HSPs)
scaffold0066 (115-167)||(11992-12044)
[»] scaffold0340 (1 HSPs)
scaffold0340 (113-167)||(10875-10929)
[»] scaffold0137 (1 HSPs)
scaffold0137 (113-167)||(17102-17156)
[»] scaffold0528 (1 HSPs)
scaffold0528 (113-169)||(1662-1718)


Alignment Details
Target: scaffold0360 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 22 - 277
Target Start/End: Complemental strand, 4941 - 4690
Alignment:
Q  22 aaatcatagagtatatgcatgctggcgtctaggtcacatttaagaactgcctttggagaaaataaaggagtgaactatcaatttggttatttctttgtaa 121  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4941 aaatcatagagtatatgcatgctggcctctaggtcacatttaagaactgcctttggagaaaataaaggagtgaactatcaatttggttatttctttgtaa 4842  T
Q  122 gttactctcaaattagtctctgattctattaatattttaaaatagtcttgatttgaactgggtaaaggaagtggacgagattgtggaggagatcaaagtc 221  Q
     ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  4841 attattctcaaattagtctctgattctattaatattttaaaatagtcttaatttgaaccgggtaaaggaagtggacgagattgtggaggaggtcaaagtc 4742  T
Q  222 ttatcttggcaatgaagtttaattatcaaggttgaggaacgcctcgtgtctctgct 277  Q
    ||||||||||||||||||    ||||||||||||||||||||||||||||||||||    
T  4741 ttatcttggcaatgaagt----ttatcaaggttgaggaacgcctcgtgtctctgct 4690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 22 - 277
Target Start/End: Original strand, 5840264 - 5840515
Alignment:
Q  22 aaatcatagagtatatgcatgctggcgtctaggtcacatttaagaactgcctttggagaaaataaaggagtgaactatcaatttggttatttctttgtaa 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||    
T  5840264 aaatcatagagtatatgcatgctggcgtctaggtcacatttaagaactgcctttggagaaaataaaggagtaaactaccaatttggttatgtctttgtaa 5840363  T
Q  122 gttactctcaaattagtctctgattctattaatattttaaaatagtcttgatttgaactgggtaaaggaagtggacgagattgtggaggagatcaaagtc 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||| ||||||||    
T  5840364 gttactctcaaattagtctctgattctattaatattttaaaatagtcttaatttgaaccgggtaaagtaagtggacgagattgtggaggaggtcaaagtc 5840463  T
Q  222 ttatcttggcaatgaagtttaattatcaaggttgaggaacgcctcgtgtctctgct 277  Q
    ||||||||||||||||||    ||||||||||||||||||||||||||||||||||    
T  5840464 ttatcttggcaatgaagt----ttatcaaggttgaggaacgcctcgtgtctctgct 5840515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 115 - 167
Target Start/End: Original strand, 29490376 - 29490428
Alignment:
Q  115 tttgtaagttactctcaaattagtctctgattctattaatattttaaaatagt 167  Q
    ||||||||| ||| |||||||||||| ||||| ||||||||||||||||||||    
T  29490376 tttgtaagtcactatcaaattagtctatgattatattaatattttaaaatagt 29490428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 168
Target Start/End: Complemental strand, 23961733 - 23961665
Alignment:
Q  100 caatttggttatttctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagtc 168  Q
    |||||| || || ||||||||||| | | |||||| |||||||||||| |||||||||| |||||||||    
T  23961733 caatttagtcatgtctttgtaagtcattttcaaatcagtctctgattcaattaatatttcaaaatagtc 23961665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 170
Target Start/End: Original strand, 10028655 - 10028710
Alignment:
Q  115 tttgtaagttactctcaaattagtctctgattctattaatattttaaaatagtctt 170  Q
    ||||||||| | ||||||||||||| |||| ||||||||||||| ||| |||||||    
T  10028655 tttgtaagtcattctcaaattagtcactgactctattaatatttcaaattagtctt 10028710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 169
Target Start/End: Original strand, 23768775 - 23768817
Alignment:
Q  127 tctcaaattagtctctgattctattaatattttaaaatagtct 169  Q
    |||||||||||||| | ||| ||||||||||||||||||||||    
T  23768775 tctcaaattagtctataattttattaatattttaaaatagtct 23768817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 167
Target Start/End: Complemental strand, 32029700 - 32029662
Alignment:
Q  129 tcaaattagtctctgattctattaatattttaaaatagt 167  Q
    |||||||||||||||| |||||| |||||||||||||||    
T  32029700 tcaaattagtctctgactctatttatattttaaaatagt 32029662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 167
Target Start/End: Original strand, 41424410 - 41424464
Alignment:
Q  113 tctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagt 167  Q
    ||||||||||| | | |||||| ||||||||| ||||||||||||||||| ||||    
T  41424410 tctttgtaagtaattttcaaatcagtctctgactctattaatattttaaattagt 41424464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 168
Target Start/End: Original strand, 21136603 - 21136644
Alignment:
Q  127 tctcaaattagtctctgattctattaatattttaaaatagtc 168  Q
    |||||||||||||| ||| ||||||||||||| |||||||||    
T  21136603 tctcaaattagtctttgactctattaatatttcaaaatagtc 21136644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 170
Target Start/End: Original strand, 32029411 - 32029464
Alignment:
Q  117 tgtaagttactctcaaattagtctctgattctattaatattttaaaatagtctt 170  Q
    ||||||| | |||||||||| ||||||| ||| ||||||||| |||||||||||    
T  32029411 tgtaagtgattctcaaattaatctctgactctgttaatatttcaaaatagtctt 32029464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 42941193 - 42941237
Alignment:
Q  186 aaggaagtggacgagattgtggaggagatcaaagtcttatcttgg 230  Q
    ||||| ||||| |||||||||||||| |||||||| |||||||||    
T  42941193 aaggatgtggatgagattgtggaggaaatcaaagttttatcttgg 42941237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 80 - 166
Target Start/End: Complemental strand, 21969385 - 21969298
Alignment:
Q  80 aaaataaaggagtgaactatcaatttggttatt-tctttgtaagttactctcaaattagtctctgattctattaatattttaaaatag 166  Q
    ||||||||||||| |||||| || ||||| ||| ||||||||||| | |||||||||||||||||| || ||||||||||||||||||    
T  21969385 aaaataaaggagtaaactataaaattggtcattatctttgtaagtgaatctcaaattagtctctgactcaattaatattttaaaatag 21969298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 168
Target Start/End: Original strand, 8446943 - 8447000
Alignment:
Q  111 tttctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagtc 168  Q
    ||||||| ||||| | | ||||||||||| |||||||||||||||||| |||||||||    
T  8446943 tttctttataagtgattttcaaattagtcactgattctattaatatttcaaaatagtc 8447000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 168
Target Start/End: Original strand, 8455747 - 8455804
Alignment:
Q  111 tttctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagtc 168  Q
    ||||||| ||||| | | ||||||||||| |||||||||||||||||| |||||||||    
T  8455747 tttctttataagtgattttcaaattagtcactgattctattaatatttcaaaatagtc 8455804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 169
Target Start/End: Original strand, 21394256 - 21394312
Alignment:
Q  113 tctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagtct 169  Q
    ||||||||||  |||||||||||||||  | | ||||||||||||||||||||||||    
T  21394256 tctttgtaagccactctcaaattagtcattaactctattaatattttaaaatagtct 21394312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 168
Target Start/End: Complemental strand, 3960929 - 3960874
Alignment:
Q  113 tctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagtc 168  Q
    ||||||||||||| | ||||| |||||| ||| ||||||||||||||||| |||||    
T  3960929 tctttgtaagttattatcaaactagtctatgactctattaatattttaaattagtc 3960874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 167
Target Start/End: Complemental strand, 19122062 - 19122008
Alignment:
Q  113 tctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagt 167  Q
    ||||||||||| ||| |||||||||||| ||| ||||||||||||| ||| ||||    
T  19122062 tctttgtaagtcactttcaaattagtctatgactctattaatatttcaaactagt 19122008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 169
Target Start/End: Original strand, 9530549 - 9530605
Alignment:
Q  113 tctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagtct 169  Q
    ||||||||||| | |||||||||||||||| | | ||||||||||| ||| ||||||    
T  9530549 tctttgtaagtcattctcaaattagtctctaactttattaatatttcaaactagtct 9530605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 167
Target Start/End: Complemental strand, 26330391 - 26330339
Alignment:
Q  115 tttgtaagttactctcaaattagtctctgattctattaatattttaaaatagt 167  Q
    ||||||||| | | |||||||||||  ||| ||||||||||||||||||||||    
T  26330391 tttgtaagtgattatcaaattagtcattgactctattaatattttaaaatagt 26330339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 182 - 274
Target Start/End: Complemental strand, 6350192 - 6350104
Alignment:
Q  182 ggtaaaggaagtggacgagattgtggaggagatcaaagtcttatcttggcaatgaagtttaattatcaaggttgaggaacgcctcgtgtctct 274  Q
    |||||||||||||||| |||||||||||||| ||||||||||||||||||||||  ||    |||||||||  ||||||||||| ||||||||    
T  6350192 ggtaaaggaagtggacaagattgtggaggaggtcaaagtcttatcttggcaatggtgt----ttatcaagggagaggaacgccttgtgtctct 6350104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 113 - 170
Target Start/End: Original strand, 39051105 - 39051162
Alignment:
Q  113 tctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagtctt 170  Q
    ||||||||||| |||||||||||||||  |||||||||||||||||||||||||||||    
T  39051105 tctttgtaagtcactctcaaattagtcattgattctattaatattttaaaatagtctt 39051162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 115 - 167
Target Start/End: Original strand, 44137393 - 44137445
Alignment:
Q  115 tttgtaagttactctcaaattagtctctgattctattaatattttaaaatagt 167  Q
    ||||||||| | |||||||||||||||||| ||||||||||||| ||||||||    
T  44137393 tttgtaagtgattctcaaattagtctctgactctattaatatttcaaaatagt 44137445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 169
Target Start/End: Complemental strand, 55264702 - 55264653
Alignment:
Q  120 aagttactctcaaattagtctctgattctattaatattttaaaatagtct 169  Q
    |||| |||||||||||||||||||| ||||||||||||| |||| |||||    
T  55264702 aagtgactctcaaattagtctctgaatctattaatatttcaaaagagtct 55264653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 158
Target Start/End: Complemental strand, 13302281 - 13302236
Alignment:
Q  113 tctttgtaagttactctcaaattagtctctgattctattaatattt 158  Q
    ||||||||||| |||||||||||||||   ||||||||||||||||    
T  13302281 tctttgtaagtcactctcaaattagtcctcgattctattaatattt 13302236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 158
Target Start/End: Original strand, 13432688 - 13432733
Alignment:
Q  113 tctttgtaagttactctcaaattagtctctgattctattaatattt 158  Q
    ||||||||||| |||||||||||||||   ||||||||||||||||    
T  13432688 tctttgtaagtaactctcaaattagtcctcgattctattaatattt 13432733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 162
Target Start/End: Complemental strand, 13432830 - 13432781
Alignment:
Q  113 tctttgtaagttactctcaaattagtctctgattctattaatattttaaa 162  Q
    ||||||||||| | |||||||||||||| || ||||||||| ||||||||    
T  13432830 tctttgtaagtcattctcaaattagtctatgcttctattaacattttaaa 13432781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 3692058 - 3692106
Alignment:
Q  113 tctttgtaagttactctcaaattagtctctgattctattaatattttaa 161  Q
    |||||||||  |||||| |||||||||| | ||||||||||||||||||    
T  3692058 tctttgtaaactactcttaaattagtctatcattctattaatattttaa 3692106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 169
Target Start/End: Original strand, 5162836 - 5162892
Alignment:
Q  113 tctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagtct 169  Q
    ||||| ||||| | |||||||||||||||| | ||||||||||||| ||| ||||||    
T  5162836 tctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtct 5162892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 168
Target Start/End: Original strand, 40942598 - 40942638
Alignment:
Q  128 ctcaaattagtctctgattctattaatattttaaaatagtc 168  Q
    ||||||||||| ||||||| ||||||||||||||| |||||    
T  40942598 ctcaaattagtgtctgattttattaatattttaaactagtc 40942638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 114 - 169
Target Start/End: Complemental strand, 22191590 - 22191535
Alignment:
Q  114 ctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagtct 169  Q
    |||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||    
T  22191590 ctttgtaagtcactctcaaattagtccctgactctattaatattttaaaatagtct 22191535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 169
Target Start/End: Original strand, 17184753 - 17184834
Alignment:
Q  89 gagtgaactatcaatttggtt-atttctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagtct 169  Q
    |||| ||||||||| |||||| || |||||||||| || | ||||| |||||||||| ||||||||||||||||| ||||||    
T  17184753 gagtaaactatcaaattggttcatgtctttgtaagctattatcaaactagtctctgactctattaatattttaaactagtct 17184834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 170
Target Start/End: Original strand, 17672952 - 17673003
Alignment:
Q  119 taagttactctcaaattagtctctgattctattaatattttaaaatagtctt 170  Q
    ||||| |||||||||||||||||  ||||||||||||||| |||||||||||    
T  17672952 taagtcactctcaaattagtctccaattctattaatatttcaaaatagtctt 17673003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 168
Target Start/End: Complemental strand, 32014053 - 32014000
Alignment:
Q  115 tttgtaagttactctcaaattagtctctgattctattaatattttaaaatagtc 168  Q
    ||||||||| | |||||||||||||| ||| |||||| |||||| |||||||||    
T  32014053 tttgtaagtgattctcaaattagtctatgactctattgatatttcaaaatagtc 32014000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 6511035 - 6511075
Alignment:
Q  129 tcaaattagtctctgattctattaatattttaaaatagtct 169  Q
    |||||||||||| ||||||| ||||||||| ||||||||||    
T  6511035 tcaaattagtctatgattctgttaatatttcaaaatagtct 6511075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 113 - 168
Target Start/End: Original strand, 39840661 - 39840716
Alignment:
Q  113 tctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagtc 168  Q
    ||||||||||| | |||||||||||||||||| ||||||||||||| |||||||||    
T  39840661 tctttgtaagtgattctcaaattagtctctgactctattaatatttcaaaatagtc 39840716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 113 - 167
Target Start/End: Original strand, 40472832 - 40472886
Alignment:
Q  113 tctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagt 167  Q
    |||||||||||||||||||||||||||| ||| |||||||| |||||||| ||||    
T  40472832 tctttgtaagttactctcaaattagtctttgactctattaaaattttaaactagt 40472886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 113 - 169
Target Start/End: Complemental strand, 55447259 - 55447203
Alignment:
Q  113 tctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagtct 169  Q
    ||||||||||| | |||||||| ||||||||| ||| ||||||||||||||||||||    
T  55447259 tctttgtaagtgattctcaaatcagtctctgactctcttaatattttaaaatagtct 55447203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 168
Target Start/End: Original strand, 45965675 - 45965730
Alignment:
Q  113 tctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagtc 168  Q
    |||||||||||  ||||||||||| ||||||||||||||||||||| || ||||||    
T  45965675 tctttgtaagtcgctctcaaattaatctctgattctattaatatttcaatatagtc 45965730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 113 - 158
Target Start/End: Complemental strand, 34763186 - 34763141
Alignment:
Q  113 tctttgtaagttactctcaaattagtctctgattctattaatattt 158  Q
    ||||||||||||  |||||||||| |||||||||||||||||||||    
T  34763186 tctttgtaagttgttctcaaattaatctctgattctattaatattt 34763141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 167
Target Start/End: Original strand, 3910237 - 3910287
Alignment:
Q  117 tgtaagttactctcaaattagtctctgattctattaatattttaaaatagt 167  Q
    |||||| |||||||||||||||| || | ||||||||||||||||| ||||    
T  3910237 tgtaagctactctcaaattagtccctaactctattaatattttaaactagt 3910287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 167
Target Start/End: Original strand, 27812207 - 27812261
Alignment:
Q  113 tctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagt 167  Q
    ||||||||||| | ||| |||||||||||||| ||||||||||||| ||| ||||    
T  27812207 tctttgtaagtcattcttaaattagtctctgagtctattaatatttcaaattagt 27812261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 169
Target Start/End: Complemental strand, 48338627 - 48338573
Alignment:
Q  115 tttgtaagttactctcaaattagtctctgattctattaatattttaaaatagtct 169  Q
    ||||||||| | | |||||||||||||||| ||||||||||| | ||||||||||    
T  48338627 tttgtaagtgattatcaaattagtctctgactctattaatatatcaaaatagtct 48338573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 170
Target Start/End: Complemental strand, 40861028 - 40860971
Alignment:
Q  113 tctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagtctt 170  Q
    ||||||||||| | ||| || ||||||||||||| ||||||||||| ||| |||||||    
T  40861028 tctttgtaagtcattcttaatttagtctctgattttattaatatttcaaattagtctt 40860971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 170
Target Start/End: Complemental strand, 51862731 - 51862691
Alignment:
Q  129 tcaaattagtctctgattctattaatattttaaaatagtctt 170  Q
    ||||||||||| |||| |||||||||||||||||||||||||    
T  51862731 tcaaattagtc-ctgactctattaatattttaaaatagtctt 51862691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 167
Target Start/End: Complemental strand, 45965879 - 45965827
Alignment:
Q  115 tttgtaagttactctcaaattagtctctgattctattaatattttaaaatagt 167  Q
    ||||||||| |||||||||||||| | ||| ||||||||||||| ||| ||||    
T  45965879 tttgtaagtcactctcaaattagtttgtgactctattaatatttcaaactagt 45965827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 158
Target Start/End: Complemental strand, 30935440 - 30935371
Alignment:
Q  89 gagtgaactatcaatttggttatttctttgtaagttactctcaaattagtctctgattctattaatattt 158  Q
    |||| ||||||||| |||||| | ||||||||||| ||||||||||||||||| || | |||||||||||    
T  30935440 gagtaaactatcaaattggttctctctttgtaagtcactctcaaattagtctccgactttattaatattt 30935371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 168
Target Start/End: Original strand, 42709919 - 42709974
Alignment:
Q  113 tctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagtc 168  Q
    ||||||||||| | |||||||| |||||| || |||||||||||||||||||||||    
T  42709919 tctttgtaagtgattctcaaatcagtctccgactctattaatattttaaaatagtc 42709974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 169
Target Start/End: Complemental strand, 41008997 - 41008943
Alignment:
Q  115 tttgtaagttactctcaaattagtctctgattctattaatattttaaaatagtct 169  Q
    ||||||||| | | |||||||| ||||||| ||||||||||||||||||||||||    
T  41008997 tttgtaagtcattttcaaattaatctctgactctattaatattttaaaatagtct 41008943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 167
Target Start/End: Original strand, 41008801 - 41008850
Alignment:
Q  118 gtaagttactctcaaattagtctctgattctattaatattttaaaatagt 167  Q
    |||||| | ||||||| |||||| ||||||||||||||||||||||||||    
T  41008801 gtaagtcattctcaaactagtctgtgattctattaatattttaaaatagt 41008850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 170
Target Start/End: Complemental strand, 26752080 - 26752035
Alignment:
Q  125 actctcaaattagtctctgattctattaatattttaaaatagtctt 170  Q
    |||||||||||||||||||| | | ||| |||||||||||||||||    
T  26752080 actctcaaattagtctctgactttgttattattttaaaatagtctt 26752035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 169
Target Start/End: Complemental strand, 43669540 - 43669486
Alignment:
Q  113 tctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagtct 169  Q
    ||||||||||  ||| ||||||||||||  || ||||||||||||||||||||||||    
T  43669540 tctttgtaagccactttcaaattagtct--gactctattaatattttaaaatagtct 43669486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 157
Target Start/End: Original strand, 16830294 - 16830338
Alignment:
Q  113 tctttgtaagttactctcaaattagtctctgattctattaatatt 157  Q
    ||||||||||| |||||||||||||| ||  ||||||||||||||    
T  16830294 tctttgtaagtcactctcaaattagtgtcaaattctattaatatt 16830338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 115 - 167
Target Start/End: Complemental strand, 6295 - 6243
Alignment:
Q  115 tttgtaagttactctcaaattagtctctgattctattaatattttaaaatagt 167  Q
    ||||||||||| |||||||||||||| ||| ||||||||||||| ||||||||    
T  6295 tttgtaagttattctcaaattagtctttgactctattaatatttcaaaatagt 6243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 164
Target Start/End: Original strand, 39643020 - 39643071
Alignment:
Q  113 tctttgtaagttactctcaaattagtctctgattctattaatattttaaaat 164  Q
    ||||||||||||||||| |||||||| | ||| |||||||||||||||||||    
T  39643020 tctttgtaagttactctaaaattagtttatgactctattaatattttaaaat 39643071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 169
Target Start/End: Complemental strand, 31046218 - 31046162
Alignment:
Q  113 tctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagtct 169  Q
    ||||||||||| | ||||||||||  ||| || ||||||||||||||||||||||||    
T  31046218 tctttgtaagtgattctcaaattatcctccgactctattaatattttaaaatagtct 31046162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 168
Target Start/End: Complemental strand, 36184830 - 36184758
Alignment:
Q  97 tatcaatttggttatt-tctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagtc 168  Q
    ||||||||||||  || ||||||||| | |||||||||||||||||| | ||||||| ||||| |||||||||    
T  36184830 tatcaatttggtatttgtctttgtaaatcactctcaaattagtctctaactctattagtatttcaaaatagtc 36184758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 169
Target Start/End: Complemental strand, 8285301 - 8285259
Alignment:
Q  127 tctcaaattagtctctgattctattaatattttaaaatagtct 169  Q
    ||||||||||||| |||| | ||||||||||||||||||||||    
T  8285301 tctcaaattagtccctgactatattaatattttaaaatagtct 8285259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 167
Target Start/End: Complemental strand, 11275865 - 11275811
Alignment:
Q  113 tctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagt 167  Q
    ||||||||| | | |||||||||||||||||| | ||||||||||||||| ||||    
T  11275865 tctttgtaaatcattctcaaattagtctctgactttattaatattttaaattagt 11275811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 170
Target Start/End: Complemental strand, 12640288 - 12640232
Alignment:
Q  113 tctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagtctt 170  Q
    ||||||||||| | ||||||||||||| |||| |||||||||| || |||||||||||    
T  12640288 tctttgtaagtgattctcaaattagtcactgaatctattaata-ttcaaaatagtctt 12640232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 158
Target Start/End: Original strand, 39174627 - 39174668
Alignment:
Q  117 tgtaagttactctcaaattagtctctgattctattaatattt 158  Q
    ||||||||||| ||||||| |||||||| |||||||||||||    
T  39174627 tgtaagttactttcaaattcgtctctgactctattaatattt 39174668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 169
Target Start/End: Complemental strand, 31051279 - 31051223
Alignment:
Q  113 tctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagtct 169  Q
    ||||||||||| | ||||||||||| | | || |||| |||||||||||||||||||    
T  31051279 tctttgtaagtgattctcaaattagcccccgactctactaatattttaaaatagtct 31051223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 169
Target Start/End: Complemental strand, 31066159 - 31066103
Alignment:
Q  113 tctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagtct 169  Q
    ||||||||||| | ||| ||||||| | | || ||||||||||||||||||||||||    
T  31066159 tctttgtaagtgattcttaaattagcccccgactctattaatattttaaaatagtct 31066103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 168
Target Start/End: Original strand, 38783894 - 38783949
Alignment:
Q  113 tctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagtc 168  Q
    ||||||||||| ||| |||||||||||  ||| |||||||||||||||||||||||    
T  38783894 tctttgtaagtcactttcaaattagtccatgactctattaatattttaaaatagtc 38783949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 169
Target Start/End: Original strand, 15395209 - 15395251
Alignment:
Q  127 tctcaaattagtctctgattctattaatattttaaaatagtct 169  Q
    |||||||||||||| ||| ||||||||||||||||||||||||    
T  15395209 tctcaaattagtctatgactctattaatattttaaaatagtct 15395251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 113 - 170
Target Start/End: Original strand, 8792969 - 8793026
Alignment:
Q  113 tctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagtctt 170  Q
    ||||||||||| |||||||||||||||||  | ||||||||||||| |||||| ||||    
T  8792969 tctttgtaagtcactctcaaattagtctccaactctattaatatttcaaaataatctt 8793026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 167
Target Start/End: Complemental strand, 1818458 - 1818406
Alignment:
Q  115 tttgtaagttactctcaaattagtctctgattctattaatattttaaaatagt 167  Q
    ||||||||| | |||||||||| | ||||| ||||||||||||||||||||||    
T  1818458 tttgtaagtgattctcaaattaatatctgactctattaatattttaaaatagt 1818406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 169
Target Start/End: Original strand, 28504713 - 28504769
Alignment:
Q  113 tctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagtct 169  Q
    ||||||||||| | |||||||||||||| ||| ||||||||||||| ||| ||||||    
T  28504713 tctttgtaagtcattctcaaattagtctatgactctattaatatttcaaactagtct 28504769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 167
Target Start/End: Original strand, 27293283 - 27293336
Alignment:
Q  114 ctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagt 167  Q
    |||||||| | | |||||||||||||||||| ||||||||||||| ||| ||||    
T  27293283 ctttgtaaatcattctcaaattagtctctgactctattaatatttcaaattagt 27293336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 158
Target Start/End: Original strand, 38576576 - 38576621
Alignment:
Q  113 tctttgtaagttactctcaaattagtctctgattctattaatattt 158  Q
    ||||||||| | | |||||||||||||| |||||||||||||||||    
T  38576576 tctttgtaaatcattctcaaattagtctttgattctattaatattt 38576621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 169
Target Start/End: Complemental strand, 46410900 - 46410844
Alignment:
Q  113 tctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagtct 169  Q
    ||||||||||| | |||||| ||||||| ||| |||| |||||||| ||||||||||    
T  46410900 tctttgtaagtgattctcaatttagtctatgactctaataatatttcaaaatagtct 46410844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 113 - 170
Target Start/End: Complemental strand, 122618 - 122561
Alignment:
Q  113 tctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagtctt 170  Q
    ||||||||||  | |||||||||||||||||| ||||||||||||| ||| |||||||    
T  122618 tctttgtaagaaattctcaaattagtctctgactctattaatatttcaaactagtctt 122561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 167
Target Start/End: Original strand, 11992 - 12044
Alignment:
Q  115 tttgtaagttactctcaaattagtctctgattctattaatattttaaaatagt 167  Q
    ||||||||||||||||||||| || | | ||| ||||||||||||||||||||    
T  11992 tttgtaagttactctcaaatttgtttttaattttattaatattttaaaatagt 12044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 167
Target Start/End: Original strand, 10875 - 10929
Alignment:
Q  113 tctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagt 167  Q
    ||||| ||||| | |||| ||||||||| ||||| ||||||||||||||||||||    
T  10875 tctttttaagtgattctctaattagtctatgattttattaatattttaaaatagt 10929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 167
Target Start/End: Original strand, 17102 - 17156
Alignment:
Q  113 tctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagt 167  Q
    |||||||||| |||||||||||||||| |  | ||||||||||||||||| ||||    
T  17102 tctttgtaagatactctcaaattagtcccaaactctattaatattttaaactagt 17156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0528 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0528
Description:

Target: scaffold0528; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 169
Target Start/End: Original strand, 1662 - 1718
Alignment:
Q  113 tctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagtct 169  Q
    ||||||||||| | ||||||||||| | | || |||| |||||||||||||||||||    
T  1662 tctttgtaagtgattctcaaattagcccccgactctactaatattttaaaatagtct 1718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University