View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0942_high_98 (Length: 270)
Name: NF0942_high_98
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0942_high_98 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 11 - 241
Target Start/End: Original strand, 35529458 - 35529688
Alignment:
| Q |
11 |
cacagaagcacaatcagaaaagatgagagtcattaaaaaaggtaaagcaaaaccgatctttaaccgaagctacctttccgtgagaatagtaagcaacttt |
110 |
Q |
| |
|
|||| ||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35529458 |
cacaaaagcacaatcagaaaagattaaagtcattaaaaaaggtaaagcaaaacccatctttaaccgaagctacctttccgtgagaatagtaagcaacttc |
35529557 |
T |
|
| Q |
111 |
agctccatctagtaacaagtcttcttcaaataccaacttatgcaaccgtagatccctatcaaaataggatcaagaaaaagagaaaaatttaaattcctga |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35529558 |
agctccatctagtaacaagtcttcttcaaataccaacttatgcaaccgtagatccctatcaaaataggatcaagaaaaagagaaaaatttaaattcctga |
35529657 |
T |
|
| Q |
211 |
taacactagaacaccgtgtgttaatgcatat |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
35529658 |
taacactagaacaccgtgtgttaatgcatat |
35529688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 11 - 241
Target Start/End: Original strand, 35536930 - 35537159
Alignment:
| Q |
11 |
cacagaagcacaatcagaaaagatgagagtcattaaaaaaggtaaagcaaaaccgatctttaaccgaagctacctttccgtgagaatagtaagcaacttt |
110 |
Q |
| |
|
|||| ||||||||||||||||||||| || | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
35536930 |
cacaaaagcacaatcagaaaagatgaaagccgttaaaaaaggtaaagcaaaacc-atctttaaccgaagctacctttccgtgagaatagtaagaaacttc |
35537028 |
T |
|
| Q |
111 |
agctccatctagtaacaagtcttcttcaaataccaacttatgcaaccgtagatccctatcaaaataggatcaagaaaaagagaaaaatttaaattcctga |
210 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||| |||| ||||| |
|
|
| T |
35537029 |
agctccatctggtaacacgtcttcttcaaataccaacttatgcaaccgtacatccctatcaaaataggatcaagaatcagagcaaaattaaaatccctga |
35537128 |
T |
|
| Q |
211 |
taacactagaacaccgtgtgttaatgcatat |
241 |
Q |
| |
|
| | |||||||| |||||||||||||||||| |
|
|
| T |
35537129 |
tgaaactagaacgccgtgtgttaatgcatat |
35537159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 11 - 232
Target Start/End: Original strand, 35577195 - 35577416
Alignment:
| Q |
11 |
cacagaagcacaatcagaaaagatgagagtcattaaaaaaggtaaagcaaaaccgatctttaaccgaagctacctttccgtgagaatagtaagcaacttt |
110 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||| ||| |||||||| | |||| |||||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
35577195 |
cacaaaagcacaatcagaaaagatgaaagtcataaaacaaggtaaaactgaacccatctttaaccaaagctacctttccatgagaatagtaagcaacttc |
35577294 |
T |
|
| Q |
111 |
agctccatctagtaacaagtcttcttcaaataccaacttatgcaaccgtagatccctatcaaaataggatcaagaaaaagagaaaaatttaaattcctga |
210 |
Q |
| |
|
|| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
35577295 |
agttccatcttctaacacgtcttcttcaaataccaacttatgcaaccgtagatccctatcaaaataggttcaagaaaaagagcaaaatttaaattcctgg |
35577394 |
T |
|
| Q |
211 |
taacactagaacaccgtgtgtt |
232 |
Q |
| |
|
| | |||||||| | ||||||| |
|
|
| T |
35577395 |
tgaaactagaacgctgtgtgtt |
35577416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University