View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0942_low_106 (Length: 281)
Name: NF0942_low_106
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0942_low_106 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 9 - 265
Target Start/End: Complemental strand, 36650499 - 36650243
Alignment:
| Q |
9 |
gataatactgttctgcacgaatggaaaggattcaggggtgttccctttttccttactatgatgggtaatctaaaaaatgtagctgtcgccttggcaggtg |
108 |
Q |
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| T |
36650499 |
gataatactgttctgcacgaatggaaaggattcaggggtgttccctttttccttactatgatgggtaatctaaaaaatgtagctgtcgccttggcaggtg |
36650400 |
T |
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| Q |
109 |
agatacgagatggggtgtacagccatttgaggccgcagctgttacacgccctaccgttctctaggtgtcactatgcaacttggggcaccataagaggata |
208 |
Q |
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| T |
36650399 |
agatacgagatggggtgtacagccgtttgaggccgcagctgttacacgccctaccgttctctaggtgtcactatgcaacttggggcatcataataggaca |
36650300 |
T |
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| Q |
209 |
caataatccagagttcgagtttcctaaacaagagaaagtgaaagcctttgcttgggt |
265 |
Q |
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| T |
36650299 |
caataatccagagttcgagtttcctaaacaagagaaagtgaaagcctttgcttgggt |
36650243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 10 - 223
Target Start/End: Original strand, 36643072 - 36643285
Alignment:
| Q |
10 |
ataatactgttctgcacgaatggaaaggattcaggggtgttccctttttccttactatgatgggtaatctaaaaaatgtagctgtcgccttggcaggtga |
109 |
Q |
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| T |
36643072 |
ataatagtcttctgcacaaatggaaaggattccggggtgtaccctttttccttgctatgatgggtaatctgagaaatgttgatgttgccttggcaggtga |
36643171 |
T |
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| Q |
110 |
gatacgagatggggtgtacagccatttgaggccgcagctgttacacgccctaccgttctctaggtgtcactatgcaacttggggcaccataagaggatac |
209 |
Q |
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| T |
36643172 |
gatacgagaaggggtatgcagccgtttgaggcctcagctgttacacatcctaccgttctctaggtgtcgcaatacaatttggggcatcataagaggacac |
36643271 |
T |
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| Q |
210 |
aataatccagagtt |
223 |
Q |
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| T |
36643272 |
aagattccagagtt |
36643285 |
T |
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