View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0942_low_109 (Length: 277)

Name: NF0942_low_109

Description: NF0942

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF0942_low_109

[»] chr8 (3 HSPs)

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 3)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 55; E-Value: 1e-22

Query Start/End: Original strand, 211 - 277

Target Start/End: Original strand, 3056733 - 3056799

Alignment:

Q	211	agttgttgaacatgaatcaaagcaaaaccaacactggaataagaggaacaacagggaatgttgcact	277	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|
T	3056733	agttgttgaacatgaatcaaagcaaaaccaacactggcataagaggaacaaaagggtatgttgcact	3056799	T

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Target: chr8; HSP #2

Raw Score: 52; E-Value: 7e-21

Query Start/End: Original strand, 214 - 277

Target Start/End: Complemental strand, 3070176 - 3070113

Alignment:

Q	214	tgttgaacatgaatcaaagcaaaaccaacactggaataagaggaacaacagggaatgttgcact	277	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|
T	3070176	tgttgaacatgaatcaaagcaaaaccaacactggcataagaggaacaaaagggtatgttgcact	3070113	T

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Target: chr8; HSP #3

Raw Score: 47; E-Value: 7e-18

Query Start/End: Original strand, 211 - 277

Target Start/End: Original strand, 3035865 - 3035931

Alignment:

Q	211	agttgttgaacatgaatcaaagcaaaaccaacactggaataagaggaacaacagggaatgttgcact	277	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|
T	3035865	agttgttgaacatgaatcaaagcaaaaccaacaccggcataagaggaataaaagggtatgttgcact	3035931	T

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