View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0942_low_111 (Length: 276)
Name: NF0942_low_111
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0942_low_111 |
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Alignment Details
Target: chr4 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 49522446 - 49522337
Alignment:
| Q |
1 |
cagcaaggtatcaagaaactcaagaacaatctagaaggctttgaaggctttcatgagactcctcagttcactgctgacgattactcgttgctatatacgt |
100 |
Q |
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| T |
49522446 |
cagcaaggtatcaagaaactcaagaataatctagaaggcttt---------catgagactc---agttcactgctgacgattactcgttgctatatacgt |
49522359 |
T |
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| Q |
101 |
acgtacgtttccctgaaacaat |
122 |
Q |
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|||||||||||||||||||||| |
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| T |
49522358 |
acgtacgtttccctgaaacaat |
49522337 |
T |
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Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 188 - 247
Target Start/End: Complemental strand, 49522270 - 49522211
Alignment:
| Q |
188 |
agaaccatctaccgtatgtgcagtcaaaagcttcctcatgactattccatgatcctgtat |
247 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49522270 |
agaaccatctaccgtatgtgcagtcaaaagcttcctcatgactattccatgatcctgtat |
49522211 |
T |
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