View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0942_low_115 (Length: 271)
Name: NF0942_low_115
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0942_low_115 |
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Alignment Details
Target: chr2 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 37304540 - 37304670
Alignment:
| Q |
1 |
taaacctcatgttatcagcgcgaagtttctcattttcagttctaagtgaagtattctcatgcctctcctgttgagtctgcaaac-nnnnnnnnnnntata |
99 |
Q |
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| T |
37304540 |
taaacctcatgttatcagcgcgaagtttctcattttcagttctaagtgaagtattctcatgcctctcctgttgagtctgcaaacaaaaaaaaaaaatata |
37304639 |
T |
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| Q |
100 |
aatcattctaagtactcttcatttttcaacc |
130 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
37304640 |
aatcattctaagtactcttcatttttcaacc |
37304670 |
T |
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Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 177 - 264
Target Start/End: Original strand, 37304717 - 37304804
Alignment:
| Q |
177 |
ccttcatttgagtacgtttgttctgaaaccaaaacttcacttgcaatggctctaaccctaactctctgcttagttccttcctttgctt |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37304717 |
ccttcatttgagtacgtttgttctgaaaccaaaacttcacttgcaatggctctaaccctaactctctgcttagttccttcctttgctt |
37304804 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 177 - 264
Target Start/End: Complemental strand, 16825269 - 16825182
Alignment:
| Q |
177 |
ccttcatttgagtacgtttgttctgaaaccaaaacttcacttgcaatggctctaaccctaactctctgcttagttccttcctttgctt |
264 |
Q |
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||||||||||||| | |||||| |||||||||||||| |||||||| ||||| | ||||||||||||||||| |||||||||||||| |
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| T |
16825269 |
ccttcatttgagtccttttgttttgaaaccaaaacttgacttgcaaaggctcaagccctaactctctgcttaactccttcctttgctt |
16825182 |
T |
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