View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0942_low_119 (Length: 268)
Name: NF0942_low_119
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0942_low_119 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 31 - 229
Target Start/End: Complemental strand, 41066081 - 41065883
Alignment:
| Q |
31 |
gaagggccagacagcgcttcacatggcagtaaagggacaaaatcttgaggtagtggaagagctgataaaagcagatccttcaacaataaacatggttgat |
130 |
Q |
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| T |
41066081 |
gaagggccagacagcacttcacatggcagtaaagggacaaaatcttgaggtagtggaagagctgataaaagcagatccttcaacaataaacatggttgat |
41065982 |
T |
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| Q |
131 |
aataaaggaaacacaacattgcatatagcaaccaggaaagccagaactcgggtaaattacataatgcttgtcaaattccatagacatatactaggtact |
229 |
Q |
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| T |
41065981 |
aataaaggaaacacaacattgcatatagcaaccaggaaagccagaactcgggtaaattacataatgcttgtcaaattccatagacatatactaggtact |
41065883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 32 - 188
Target Start/End: Complemental strand, 23033109 - 23032953
Alignment:
| Q |
32 |
aagggccagacagcgcttcacatggcagtaaagggacaaaatcttgaggtagtggaagagctgataaaagcagatccttcaacaataaacatggttgata |
131 |
Q |
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||||| ||||| |||||||||||||| || |||||||| | ||||| ||| || || ||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
23033109 |
aagggacagacggcgcttcacatggcggtgaagggacagagtcttgtggtggtagaggagttgataaaagcagatccatcaacaataaacatggttgata |
23033010 |
T |
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| Q |
132 |
ataaaggaaacacaacattgcatatagcaaccaggaaagccagaactcgggtaaatt |
188 |
Q |
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|||| || || ||| | ||||||||||||||||||| | ||||||| |||||||| |
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| T |
23033009 |
ataagggtaatacagcgctgcatatagcaaccaggaagggaagaactcaggtaaatt |
23032953 |
T |
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