View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0942_low_123 (Length: 265)

Name: NF0942_low_123
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0942_low_123
NF0942_low_123
[»] chr7 (18 HSPs)
chr7 (1-239)||(26088167-26088405)
chr7 (1-239)||(26111955-26112193)
chr7 (1-232)||(26128959-26129190)
chr7 (1-239)||(19103071-19103309)
chr7 (1-212)||(26155600-26155811)
chr7 (2-232)||(26186634-26186871)
chr7 (1-223)||(26191666-26191888)
chr7 (42-239)||(26179468-26179665)
chr7 (56-187)||(26251285-26251416)
chr7 (42-189)||(26302244-26302391)
chr7 (56-191)||(26242833-26242968)
chr7 (56-191)||(26297881-26298016)
chr7 (56-156)||(26278167-26278267)
chr7 (54-210)||(26204299-26204455)
chr7 (54-210)||(26223937-26224093)
chr7 (47-189)||(26260307-26260449)
chr7 (47-112)||(26227484-26227549)
chr7 (47-117)||(26207918-26207988)
[»] chr4 (1 HSPs)
chr4 (42-191)||(44903686-44903835)
[»] chr5 (1 HSPs)
chr5 (54-103)||(5995053-5995102)


Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 26088405 - 26088167
Alignment:
Q  1 cctcaaaatcttgaaggaaagtgttttcactctcatccctctcatatttccttacaacccagataaaattatgacctgaattttcaagaccgtgtgcaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  26088405 cctcaaaatcttgaaggaaagtgttttcactctcatccctctcatatttccttacaacccagataaaattatgacctgaattttcgagaccgtgtgcaat 26088306  T
Q  101 ttctacaatctgagcattatcaagcccagttagacttccaaaacttacatacaatacggactcattttcctttgagttaagccaatttagccactcttcc 200  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26088305 ttctacaatctgagcattatcaagcctaattagacttccaaaacttacatacaatacggactcattttcctttgagttaagccaatttagccactcttcc 26088206  T
Q  201 tcttttccaagctcctctatgtgtcccctattggccttt 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  26088205 tcttttccaagctcctctatgtgtcccctattggccttt 26088167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 26112193 - 26111955
Alignment:
Q  1 cctcaaaatcttgaaggaaagtgttttcactctcatccctctcatatttccttacaacccagataaaattatgacctgaattttcaagaccgtgtgcaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  26112193 cctcaaaatcttgaaggaaagtgttttcactctcatccctctcatatttccttacaacccagataaaattatgacctgaattttcgagaccgtgtgcaat 26112094  T
Q  101 ttctacaatctgagcattatcaagcccagttagacttccaaaacttacatacaatacggactcattttcctttgagttaagccaatttagccactcttcc 200  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26112093 ttctacaatctgagcattatcaagcctaattagacttccaaaacttacatacaatacggactcattttcctttgagttaagccaatttagccactcttcc 26111994  T
Q  201 tcttttccaagctcctctatgtgtcccctattggccttt 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  26111993 tcttttccaagctcctctatgtgtcccctattggccttt 26111955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 26129190 - 26128959
Alignment:
Q  1 cctcaaaatcttgaaggaaagtgttttcactctcatccctctcatatttccttacaacccagataaaattatgacctgaattttcaagaccgtgtgcaat 100  Q
    |||||||||||||||||||| |||||||||||||||| ||||| | ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  26129190 cctcaaaatcttgaaggaaattgttttcactctcatcgctctcctttttccttacaacccatataaaattatgacctgaattttcgagaccgtgtgcaat 26129091  T
Q  101 ttctacaatctgagcattatcaagcccagttagacttccaaaacttacatacaatacggactcattttcctttgagttaagccaatttagccactcttcc 200  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||| ||| ||    
T  26129090 ttctacaatctgagcattatcaagcctagttagacttccaaaacttacatacagtacggactcattttgctttgagttaagccaatttaaccagtctgcc 26128991  T
Q  201 tcttttccaagctcctctatgtgtcccctatt 232  Q
    ||||||||||||||||||||||||||||||||    
T  26128990 tcttttccaagctcctctatgtgtcccctatt 26128959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 19103071 - 19103309
Alignment:
Q  1 cctcaaaatcttgaaggaaagtgttttcactctcatccctctcatatttccttacaacccagataaaattatgacctgaattttcaagaccgtgtgcaat 100  Q
    ||||||||||||| || ||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  19103071 cctcaaaatcttgtagaaaactgttttcactctcatctctctcatttttccttacaacccagataaaattatgacctgaattttcaagaccgtgtgcgat 19103170  T
Q  101 ttctacaatctgagcattatcaagcccagttagacttccaaaacttacatacaatacggactcattttcctttgagttaagccaatttagccactcttcc 200  Q
    ||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  19103171 ttctacaatctgatcattttcaagcctagttagacttccaaaacttacatacaatacagactcattttgctttgagttaagccaatttagccactcttcc 19103270  T
Q  201 tcttttccaagctcctctatgtgtcccctattggccttt 239  Q
    |||||||| | |||||||| ||| |||||| ||||||||    
T  19103271 tcttttccgatctcctctacgtgccccctactggccttt 19103309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 26155811 - 26155600
Alignment:
Q  1 cctcaaaatcttgaaggaaagtgttttcactctcatccctctcatatttccttacaacccagataaaattatgacctgaattttcaagaccgtgtgcaat 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  26155811 cctcaaaatcttgaaggaaagtgttttcactctcatcgctctcctttttccttacaacccagataaaattatgacctgaattttcgagaccgtgtgcaat 26155712  T
Q  101 ttctacaatctgagcattatcaagcccagttagacttccaaaacttacatacaatacggactcattttcctttgagttaagccaatttagccactcttcc 200  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||  ||    
T  26155711 ttctacaatctgagcattatcaagcctagttagacttccaaaacttacatacaatacggactcattttgctttgtgttaagccaatttaaccactcggcc 26155612  T
Q  201 tcttttccaagc 212  Q
    ||||||||||||    
T  26155611 tcttttccaagc 26155600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 2 - 232
Target Start/End: Complemental strand, 26186871 - 26186634
Alignment:
Q  2 ctcaaaatcttgaaggaaagtgttttcactctcatccctctcatatttcctta-------caacccagataaaattatgacctgaattttcaagaccgtg 94  Q
    |||||||||||| ||||||||||||||||||||||| || || | ||||||||       |||||||||||||||||||| |||||||||||||||||||    
T  26186871 ctcaaaatcttgtaggaaagtgttttcactctcatctctttcctttttccttataagttacaacccagataaaattatgatctgaattttcaagaccgtg 26186772  T
Q  95 tgcaatttctacaatctgagcattatcaagcccagttagacttccaaaacttacatacaatacggactcattttcctttgagttaagccaatttagccac 194  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||| |||||||||| ||| |||||||||||||||||||||||||    
T  26186771 tgcaatttctacaatctgagcattatcaagcctagttacacttccaaaacttaaatacagtacggactcaatttgctttgagttaagccaatttagccac 26186672  T
Q  195 tcttcctcttttccaagctcctctatgtgtcccctatt 232  Q
    |||||||||| | |||||||||| ||||||||||||||    
T  26186671 tcttcctcttctgcaagctcctccatgtgtcccctatt 26186634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 26191888 - 26191666
Alignment:
Q  1 cctcaaaatcttgaaggaaagtgttttcactctcatccctctcatatttccttacaacccagataaaattatgacctgaattttcaagaccgtgtgcaat 100  Q
    ||||||||||||| |||||| ||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  26191888 cctcaaaatcttgtaggaaactgttttcactctcatccatatcatttttccttacaacccagataaaattatgacctgaattttcaagcccatgtgcaat 26191789  T
Q  101 ttctacaatctgagcattatcaagcccagttagacttccaaaacttacatacaatacggactcattttcctttgagttaagccaatttagccactcttcc 200  Q
    |||||||| |||||||| |   |||| ||||| ||||||||| |||||||| | ||| |||||||||| |||||||||||||||||||||||||||| ||    
T  26191788 ttctacaagctgagcatgagttagcctagttaaacttccaaagcttacataaagtacagactcattttgctttgagttaagccaatttagccactctgcc 26191689  T
Q  201 tcttttccaagctcctctatgtg 223  Q
     ||||||||  ||||||||||||    
T  26191688 acttttccattctcctctatgtg 26191666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 42 - 239
Target Start/End: Complemental strand, 26179665 - 26179468
Alignment:
Q  42 tcatatttccttacaacccagataaaattatgacctgaattttcaagaccgtgtgcaatttctacaatctgagcattatcaagcccagttagacttccaa 141  Q
    ||||||||  ||| ||||||||||||||| |||||||| |||||||| ||||| ||||||||||||| ||||||||    || || |   || || ||||    
T  26179665 tcatatttttttataacccagataaaattttgacctgagttttcaagcccgtgcgcaatttctacaagctgagcatgcggaaacctaacaaggctaccaa 26179566  T
Q  142 aacttacatacaatacggactcattttcctttgagttaagccaatttagccactcttcctcttttccaagctcctctatgtgtcccctattggccttt 239  Q
    |||||||||| ||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||    
T  26179565 aacttacatataatacagactcattttgctttgagttaagccaatttagccattcttcctcttttccaagttcctctatgtgtccccttttggccttt 26179468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 56 - 187
Target Start/End: Complemental strand, 26251416 - 26251285
Alignment:
Q  56 aacccagataaaattatgacctgaattttcaagaccgtgtgcaatttctacaatctgagcattatcaagcccagttagacttccaaaacttacatacaat 155  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||| |  ||||| ||| || || ||||||||||||||||||    
T  26251416 aacccagataaaattatgacctgaattttcaagcccatgtgcaatttctacaagctgagcatgaggaagcctagtaaggctgccaaaacttacatacaat 26251317  T
Q  156 acggactcattttcctttgagttaagccaatt 187  Q
    || |||||||||| ||| ||||||||||||||    
T  26251316 actgactcattttgcttcgagttaagccaatt 26251285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 42 - 189
Target Start/End: Complemental strand, 26302391 - 26302244
Alignment:
Q  42 tcatatttccttacaacccagataaaattatgacctgaattttcaagaccgtgtgcaatttctacaatctgagcattatcaagcccagttagacttccaa 141  Q
    |||||||| | ||| ||||| |||||| ||||||||||||||||||| ||||||||||||||||||| |||||||| |  | ||| |   || || ||||    
T  26302391 tcatattttcgtacgacccaaataaaactatgacctgaattttcaagcccgtgtgcaatttctacaagctgagcatgaggatgccaaacaaggctgccaa 26302292  T
Q  142 aacttacatacaatacggactcattttcctttgagttaagccaattta 189  Q
    |||||||||||||||| |||||||||| ||||||||||||||||||||    
T  26302291 aacttacatacaatacagactcattttgctttgagttaagccaattta 26302244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 56 - 191
Target Start/End: Complemental strand, 26242968 - 26242833
Alignment:
Q  56 aacccagataaaattatgacctgaattttcaagaccgtgtgcaatttctacaatctgagcattatcaagcccagttagacttccaaaacttacatacaat 155  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||| |  || || |||  | || ||||||||||||||||||    
T  26242968 aacccagataaaattatgacctgaattttcaagcccgtgagcaatttctacaagctgagcatgaggaaacctagtctggctgccaaaacttacatacaat 26242869  T
Q  156 acggactcattttcctttgagttaagccaatttagc 191  Q
    || |||||||||| |||   ||||||||||||||||    
T  26242868 acagactcattttgcttcaggttaagccaatttagc 26242833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 56 - 191
Target Start/End: Complemental strand, 26298016 - 26297881
Alignment:
Q  56 aacccagataaaattatgacctgaattttcaagaccgtgtgcaatttctacaatctgagcattatcaagcccagttagacttccaaaacttacatacaat 155  Q
    ||||||||||||||||||||||||||||||||| || ||  |||||||||||| |||||||| |  ||||| ||| |  || ||||||||||||||||||    
T  26298016 aacccagataaaattatgacctgaattttcaagcccatgaacaatttctacaagctgagcataaggaagcctagtaaagctgccaaaacttacatacaat 26297917  T
Q  156 acggactcattttcctttgagttaagccaatttagc 191  Q
    || || ||||||||||| || |||||||||||||||    
T  26297916 acagattcattttccttcgaattaagccaatttagc 26297881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 56 - 156
Target Start/End: Complemental strand, 26278267 - 26278167
Alignment:
Q  56 aacccagataaaattatgacctgaattttcaagaccgtgtgcaatttctacaatctgagcattatcaagcccagttagacttccaaaacttacatacaat 155  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |  ||||| | | || || ||||| ||||||||||||    
T  26278267 aacccagataaaattatgacctgaattttcaagcccgtgtgcaatttctacaagctgagcatgaggaagcctaataaggctgccaaagcttacatacaat 26278168  T
Q  156 a 156  Q
    |    
T  26278167 a 26278167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 54 - 210
Target Start/End: Complemental strand, 26204455 - 26204299
Alignment:
Q  54 acaacccagataaaattatgacctgaattttcaagaccgtgtgcaatttctacaatctgagcattatcaagcccagttagacttccaaaacttacataca 153  Q
    |||||||| || ||||||||||| |||||||||||||| || || |||||  |||||||  ||| |  ||||| ||| || |||||||||||||||||||    
T  26204455 acaacccaaatgaaattatgaccagaattttcaagaccatgagctatttcagcaatctgttcatgagaaagcctagtaaggcttccaaaacttacataca 26204356  T
Q  154 atacggactcattttcctttgagttaagccaatttagccactcttcctcttttccaa 210  Q
    | || ||||| |||||||| || ||||||||||||| | | ||||  ||||||||||    
T  26204355 acacagactcgttttccttagaattaagccaatttaccaattcttgatcttttccaa 26204299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 54 - 210
Target Start/End: Complemental strand, 26224093 - 26223937
Alignment:
Q  54 acaacccagataaaattatgacctgaattttcaagaccgtgtgcaatttctacaatctgagcattatcaagcccagttagacttccaaaacttacataca 153  Q
    |||||||| || ||||||||||| |||||||||||||| || || |||||  |||||||  ||| |  ||||| ||| || |||||||||||||||||||    
T  26224093 acaacccaaatgaaattatgaccagaattttcaagaccatgagctatttcagcaatctgttcatgagaaagcctagtaaggcttccaaaacttacataca 26223994  T
Q  154 atacggactcattttcctttgagttaagccaatttagccactcttcctcttttccaa 210  Q
    | || ||||| |||||||| || ||||||||||||| | | ||||  ||||||||||    
T  26223993 acacagactcgttttccttagaattaagccaatttaccaattcttgatcttttccaa 26223937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 47 - 189
Target Start/End: Complemental strand, 26260449 - 26260307
Alignment:
Q  47 tttccttacaacccagataaaattatgacctgaattttcaagaccgtgtgcaatttctacaatctgagcattatcaagcccagttagacttccaaaactt 146  Q
    |||||| |||||||| || ||||||||||||||||||||||| || || || ||||| |||| |||||||| |  ||||| ||| |  ||||||||||||    
T  26260449 tttcctaacaacccaaatgaaattatgacctgaattttcaagtccatgagctatttcaacaacctgagcataagaaagcctagtcaagcttccaaaactt 26260350  T
Q  147 acatacaatacggactcattttcctttgagttaagccaattta 189  Q
    |||||||| || || |||||    || ||||||||||||||||    
T  26260349 acatacaacacagaatcattagggttagagttaagccaattta 26260307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 26227549 - 26227484
Alignment:
Q  47 tttccttacaacccagataaaattatgacctgaattttcaagaccgtgtgcaatttctacaatctg 112  Q
    |||||| |||||||| || |||||||||||||||||||||||||| || || ||||||||||||||    
T  26227549 tttcctaacaacccaaatgaaattatgacctgaattttcaagaccatgagctatttctacaatctg 26227484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 117
Target Start/End: Complemental strand, 26207988 - 26207918
Alignment:
Q  47 tttccttacaacccagataaaattatgacctgaattttcaagaccgtgtgcaatttctacaatctgagcat 117  Q
    |||||| |||||||| || ||||||||||| |||||||| ||||| || || |||||||||||||||||||    
T  26207988 tttcctaacaacccaaatgaaattatgaccggaattttccagaccatgagctatttctacaatctgagcat 26207918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 42 - 191
Target Start/End: Complemental strand, 44903835 - 44903686
Alignment:
Q  42 tcatatttccttacaacccagataaaattatgacctgaattttcaagaccgtgtgcaatttctacaatctgagcattatcaagcccagttagacttccaa 141  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||| |||||||| |  ||||  ||| || |||||||    
T  44903835 tcatttttccttacaacccagataaaattatgacctgacttttcaagcccatgtgcaatttctacaagctgagcatgaaaaagcttagtaaggcttccaa 44903736  T
Q  142 aacttacatacaatacggactcattttcctttgagttaagccaatttagc 191  Q
    ||||||||||||| || |||||||||| ||||||||||||||||||||||    
T  44903735 aacttacatacaacacagactcattttgctttgagttaagccaatttagc 44903686  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 103
Target Start/End: Original strand, 5995053 - 5995102
Alignment:
Q  54 acaacccagataaaattatgacctgaattttcaagaccgtgtgcaatttc 103  Q
    |||||||| || |||||||||||||||||||||||  | |||||||||||    
T  5995053 acaacccaaatgaaattatgacctgaattttcaagtgcatgtgcaatttc 5995102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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