View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0942_low_127 (Length: 262)
Name: NF0942_low_127
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0942_low_127 |
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| [»] chr3 (1 HSPs) |
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| [»] chr5 (7 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 14548412 - 14548673
Alignment:
| Q |
1 |
caagcttcatggtttaaatgctcaatggagtgaagagaagaagcaaagttacataaggcatgcaattcgggagtataatattcacaagaccttgatccat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14548412 |
caagcttcatggtttaaatgctcaatggagtgaagagaagaagcaaagttacataaggcatgcaattcgggagtataatattcacaagaccttgatccat |
14548511 |
T |
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| Q |
101 |
cgtcatattgttcttttatgggacatctttgagattgatccaaacacattctgcactgttctagagtactgcagcggtatatacacctcatctgttttat |
200 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14548512 |
cgtcatattgttcgtttatgggacatctttgagattgatccaaatacattctgcactgttctagagtactgcagcggtatatacacctcatctgttttat |
14548611 |
T |
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| Q |
201 |
gaagataattattttgttgacttttgtgatacagtatgggtctgattggatcgagttatttg |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
14548612 |
gaagataattattttgttgacttttgtgatacagtatgggtctgtttggattgagttatttg |
14548673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 37588050 - 37588311
Alignment:
| Q |
1 |
caagcttcatggtttaaatgctcaatggagtgaagagaagaagcaaagttacataaggcatgcaattcgggagtataatattcacaagaccttgatccat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
37588050 |
caagcttcatggtttaaatgctcaatggagtgaagagaagaagcaaagttacataaggcatgcaattcgggagtataatattcacaagaccttggtccat |
37588149 |
T |
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| Q |
101 |
cgtcatattgttcttttatgggacatctttgagattgatccaaacacattctgcactgttctagagtactgcagcggtatatacacctcatctgttttat |
200 |
Q |
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| T |
37588150 |
cgtcatattgttcgtttatggaacatctttgagattgatccaaatacattctgcactgttctagagtattgcagcggtatatacacctcatatgttttat |
37588249 |
T |
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| Q |
201 |
gaagataattattttgttgacttttgtgatacagtatgggtctgattggatcgagttatttg |
262 |
Q |
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|||||||||||||||||| |||||||| ||| | |||||||||| |||||| |||||||||| |
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| T |
37588250 |
gaagataattattttgtttacttttgttatagactatgggtctgtttggattgagttatttg |
37588311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 37525889 - 37526150
Alignment:
| Q |
1 |
caagcttcatggtttaaatgctcaatggagtgaagagaagaagcaaagttacataaggcatgcaattcgggagtataatattcacaagaccttgatccat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
37525889 |
caagcttcatggtttaaatgctcaatggagtgaagagaagaagcaaagttacataaggcatgcaattcgggagtataatattcacaagaccttggtccat |
37525988 |
T |
|
| Q |
101 |
cgtcatattgttcttttatgggacatctttgagattgatccaaacacattctgcactgttctagagtactgcagcggtatatacacctcatctgttttat |
200 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
37525989 |
cgtcatattgttcgtttatgggacatctttgagattgatccaaatacattctgcactgttctagagtattgcagcggtatatacacctcatatgttttat |
37526088 |
T |
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| Q |
201 |
gaagataattattttgttgacttttgtgatacagtatgggtctgattggatcgagttatttg |
262 |
Q |
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| T |
37526089 |
gaagataattgttatgtttacttttgttatagactatgggtctgtttggattgagttatttg |
37526150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 37690326 - 37690587
Alignment:
| Q |
1 |
caagcttcatggtttaaatgctcaatggagtgaagagaagaagcaaagttacataaggcatgcaattcgggagtataatattcacaagaccttgatccat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
37690326 |
caagcttcatggtttaaatgctcaatggagtgaagagaagaagcaaagttacataaggcatgcaattcgggagtataatattcacaagaccttggtccat |
37690425 |
T |
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| Q |
101 |
cgtcatattgttcttttatgggacatctttgagattgatccaaacacattctgcactgttctagagtactgcagcggtatatacacctcatctgttttat |
200 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| || |||||| | |
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| T |
37690426 |
cgtcatattgttcgtttatgggacatctttgagattgatccaaatacattctgcactgttctagagtattgcagcggtatatacaccttatatgtttttt |
37690525 |
T |
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| Q |
201 |
gaagataattattttgttgacttttgtgatacagtatgggtctgattggatcgagttatttg |
262 |
Q |
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| T |
37690526 |
gaagataattattttgtttacttttgttatagactatgggtctgtttggattgagttatttg |
37690587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 37794392 - 37794655
Alignment:
| Q |
1 |
caagcttcatggtttaaatgctcaatggagtgaagagaagaagcaaagttacataaggcatgcaattcgggagtataatattcacaagaccttgatccat |
100 |
Q |
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|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
37794392 |
caagcttcatggtgtaaatgctcaatggagtgaagagaagaagcaaagttacataaggcatgcaattcgggagtataatattcacaagaccttggttcat |
37794491 |
T |
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| Q |
101 |
cgtcatattgttcttttatgggacatctttgagattgatccaaacacattctgcactgttctagagtactgcagcgg--tatatacacctcatctgtttt |
198 |
Q |
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| T |
37794492 |
cgtcatattgttcgtttatgggacatctttaagattgatccaaatacattctgcactgttctggagttttgtagtggtatatatacacctcacttgtttt |
37794591 |
T |
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| Q |
199 |
atgaagataattattttgttgacttttgtgatacagtatgggtctgattggatcgagttatttg |
262 |
Q |
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| || | || ||||||| |||||||| || || | || | ||||| |||||| |||||||||| |
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| T |
37794592 |
tttaaaacaactattttgctgacttttttggtagattacgagtctgtttggattgagttatttg |
37794655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 37618624 - 37618887
Alignment:
| Q |
1 |
caagcttcatggtttaaatgctcaatggagtgaagagaagaagcaaagttacataaggcatgcaattcgggagtataatattcacaagaccttgatccat |
100 |
Q |
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|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
37618624 |
caagcttcatggtgtaaatgctcaatggagtgaagagaagaagcaaagttacataaggcatgcaattcgggagtataatattcacaagaccttggttcat |
37618723 |
T |
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| Q |
101 |
cgtcatattgttcttttatgggacatctttgagattgatccaaacacattctgcactgttctagagtactgcagcgg--tatatacacctcatctgtttt |
198 |
Q |
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| T |
37618724 |
cgtcatattgttcgtttatgggacatctttaagattgatccaaatacattctgcactgttctggagttttgtagtggtatatatacacctcacttgtttt |
37618823 |
T |
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| Q |
199 |
atgaagataattattttgttgacttttgtgatacagtatgggtctgattggatcgagttatttg |
262 |
Q |
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| || | | ||||||| |||||||| || || | || | ||||| |||||| |||||||||| |
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| T |
37618824 |
cttaaaacgactattttgctgacttttttggtagattacgagtctgtttggattgagttatttg |
37618887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 37787645 - 37787869
Alignment:
| Q |
1 |
caagcttcatggtttaaatgctcaatggagtgaagagaagaagcaaagttacataaggcatgcaattcgggagtataatattcacaagaccttgatccat |
100 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||| |||| | ||||||||||||||||| ||||| |
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| T |
37787645 |
caagcttcatggtttaaatgctcaatgggctgaagagaagaagctaagttacatgaggcatgcaattcgagagtgtcatattcacaagaccttggtccat |
37787744 |
T |
|
| Q |
101 |
cgtcatattgttcttttatgggacatctttgagattgatccaaacacattctgcactgttctagagtactgcagcggtatatacacctcatctgttttat |
200 |
Q |
| |
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|| || ||||||| |||||||||||||||| | |||||||| | |||||||||||||||||||| || || || ||||||||||||||||||||||||| |
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| T |
37787745 |
cgccacattgttcgtttatgggacatctttcaaattgatccggatacattctgcactgttctagaatattgtagtggtatatacacctcatctgttttat |
37787844 |
T |
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| Q |
201 |
gaagataattattttgttgactttt |
225 |
Q |
| |
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||||||| ||||||||||| ||||| |
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| T |
37787845 |
gaagatacttattttgttgcctttt |
37787869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 146 - 225
Target Start/End: Original strand, 37611060 - 37611139
Alignment:
| Q |
146 |
acattctgcactgttctagagtactgcagcggtatatacacctcatctgttttatgaagataattattttgttgactttt |
225 |
Q |
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|||||||||||||||||||| || || || |||||||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
37611060 |
acattctgcactgttctagaatattgtagtggtatatacacctcatctgttttatgaagatacttattttgttgcctttt |
37611139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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