View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0942_low_133 (Length: 251)

Name: NF0942_low_133
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0942_low_133
NF0942_low_133
[»] chr3 (1 HSPs)
chr3 (13-251)||(14548949-14549187)
[»] chr5 (7 HSPs)
chr5 (13-251)||(37690871-37691109)
chr5 (13-251)||(37526432-37526670)
chr5 (13-251)||(37588594-37588832)
chr5 (13-248)||(37611433-37611670)
chr5 (13-248)||(37788163-37788400)
chr5 (13-222)||(37619107-37619316)
chr5 (13-222)||(37794927-37795136)


Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 14549187 - 14548949
Alignment:
Q  13 attctccactatcttgctaagaccaaaatcagtcactttggcaataccaagctcatcaaacaaaatatttccaggctttaaatcataatggataatcttc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  14549187 attctccactatcttgctaagaccaaaatcagtcactttggcaataccaagctcatcaaacaaaacatttccaggctttaaatcataatggataatcttc 14549088  T
Q  113 agtgctcttttattcatgtaaataaggccttggaaaatctgaactaaaattactcgagcctccttctcaggcaatataggcgttgctttaagaacagcat 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  14549087 agtgctcttttattcatgtaaataaggccttggaaaatctgaactaaaattactctagcctccttctcaggcaatataggtgttgctttaagaacagcat 14548988  T
Q  213 caagatctttccagggtagaacagaggaggatcaaatga 251  Q
    ||||||||||||  |||||||||||||||||||||||||    
T  14548987 caagatctttccctggtagaacagaggaggatcaaatga 14548949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 37691109 - 37690871
Alignment:
Q  13 attctccactatcttgctaagaccaaaatcagtcactttggcaataccaagctcatcaaacaaaatatttccaggctttaaatcataatggataatcttc 112  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  37691109 attctccacaatcttgctaagaccaaaatcagtcactttggcaataccaagctcatcaaacaaaacatttccaggctttaaatcataatggataatcttc 37691010  T
Q  113 agtgctcttttattcatgtaaataaggccttggaaaatctgaactaaaattactcgagcctccttctcaggcaatataggcgttgctttaagaacagcat 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||    
T  37691009 agtgctcttttattcatgtaaataaggccttggaaaatctgaactaaaatgactctagcctccttctcaggcaatataggtgttgctttaagaacagcat 37690910  T
Q  213 caagatctttccagggtagaacagaggaggatcaaatga 251  Q
    ||||||||||||  |||||||||||||||||||||||||    
T  37690909 caagatctttccctggtagaacagaggaggatcaaatga 37690871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 37526670 - 37526432
Alignment:
Q  13 attctccactatcttgctaagaccaaaatcagtcactttggcaataccaagctcatcaaacaaaatatttccaggctttaaatcataatggataatcttc 112  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  37526670 attctccacaatcttgctgagaccaaaatcagtcactttggcaataccaagctcatcaaacaaaacatttccgggctttaaatcataatggataatcttc 37526571  T
Q  113 agtgctcttttattcatgtaaataaggccttggaaaatctgaactaaaattactcgagcctccttctcaggcaatataggcgttgctttaagaacagcat 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||    
T  37526570 agtgctcttttattcatgtaaataaggccttggaaaatctgaactaaaatgactctagcctccttctcaggcaatataggtgttgctttaagaacagcat 37526471  T
Q  213 caagatctttccagggtagaacagaggaggatcaaatga 251  Q
    ||||||||||||  |||||||||||||||||||||||||    
T  37526470 caagatctttccctggtagaacagaggaggatcaaatga 37526432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 37588832 - 37588594
Alignment:
Q  13 attctccactatcttgctaagaccaaaatcagtcactttggcaataccaagctcatcaaacaaaatatttccaggctttaaatcataatggataatcttc 112  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  37588832 attctccacaatcttgctaagaccaaaatcagtcactttggcaataccaagctcatcaaacaaaacatttccaggctttaaatcataatggataatcttc 37588733  T
Q  113 agtgctcttttattcatgtaaataaggccttggaaaatctgaactaaaattactcgagcctccttctcaggcaatataggcgttgctttaagaacagcat 212  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||| |||||||||||||||    
T  37588732 agtgctcttctattcatgtaaataaggccttggaaaatctgaactaaaatgactctagcctccttctcaggcaatataggtgtttctttaagaacagcat 37588633  T
Q  213 caagatctttccagggtagaacagaggaggatcaaatga 251  Q
    ||||||||||||  |||||||||||||||||||||||||    
T  37588632 caagatctttccctggtagaacagaggaggatcaaatga 37588594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 13 - 248
Target Start/End: Complemental strand, 37611670 - 37611433
Alignment:
Q  13 attctccactatcttgctaagaccaaaatcagtcactttggcaataccaagctcatcaaacaaaatatttccaggctttaaatcataatggataatcttc 112  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||     
T  37611670 attctctactatcttgctaagaccaaaatcagtcactttggcaataccaagttcatcaaacaaaacatttccaggcttcaaatcataatggataatcttg 37611571  T
Q  113 agtgctcttttattcatgtaaataaggccttggaaaatctgaactaaaattactcgagcctccttctcaggcaatataggcgttgctttaagaacagcat 212  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||  |||||||||| |||||||||||||||||||    
T  37611570 agtgctcctttattcatgtaaataaggccttggaaaatctgaactaaaatgactctagcctccctctcgagcaatataggtgttgctttaagaacagcat 37611471  T
Q  213 caagatctttccagggt--agaacagaggaggatcaaa 248  Q
    |||||||||| |  |||  |||||||||||||||||||    
T  37611470 caagatcttttcctggtagagaacagaggaggatcaaa 37611433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 13 - 248
Target Start/End: Complemental strand, 37788400 - 37788163
Alignment:
Q  13 attctccactatcttgctaagaccaaaatcagtcactttggcaataccaagctcatcaaacaaaatatttccaggctttaaatcataatggataatcttc 112  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||     
T  37788400 attctctactatcttgctaagaccaaaatcagtcactttggcaataccaagttcatcaaacaaaacatttccaggcttcaaatcataatggataatcttg 37788301  T
Q  113 agtgctcttttattcatgtaaataaggccttggaaaatctgaactaaaattactcgagcctccttctcaggcaatataggcgttgctttaagaacagcat 212  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||  |||||||||| |||||||||||||||||||    
T  37788300 agtgctcctttattcatgtaaataaggccttggaaaatctgaactaaaatgactctagcctccctctcgagcaatataggtgttgctttaagaacagcat 37788201  T
Q  213 caagatctttccagggt--agaacagaggaggatcaaa 248  Q
    |||||||||| |  |||  |||||||||||||||||||    
T  37788200 caagatcttttcctggtagagaacagaggaggatcaaa 37788163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 13 - 222
Target Start/End: Complemental strand, 37619316 - 37619107
Alignment:
Q  13 attctccactatcttgctaagaccaaaatcagtcactttggcaataccaagctcatcaaacaaaatatttccaggctttaaatcataatggataatcttc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||    
T  37619316 attctccactatcttgctaagaccaaaatcagtcactttggcaataccaagctcatcaaacaaaacatttccgggctttaaatcataatggataaccttc 37619217  T
Q  113 agtgctcttttattcatgtaaataaggccttggaaaatctgaactaaaattactcgagcctccttctcaggcaatataggcgttgctttaagaacagcat 212  Q
     | | ||||| ||||||||||| |||| ||| || |||||||| |||||  |||  |||||| ||||| ||||| ||||| ||| | ||||||||| |||    
T  37619216 ggcgttctttcattcatgtaaacaagggctttgataatctgaaataaaacgactttagcctcgttctcgggcaaaataggtgtttccttaagaacatcat 37619117  T
Q  213 caagatcttt 222  Q
    ||||||||||    
T  37619116 caagatcttt 37619107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 13 - 222
Target Start/End: Complemental strand, 37795136 - 37794927
Alignment:
Q  13 attctccactatcttgctaagaccaaaatcagtcactttggcaataccaagctcatcaaacaaaatatttccaggctttaaatcataatggataatcttc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||    
T  37795136 attctccactatcttgctaagaccaaaatcagtcactttggcaataccaagctcatcaaacaaaacatttccgggctttaaatcataatggataaccttc 37795037  T
Q  113 agtgctcttttattcatgtaaataaggccttggaaaatctgaactaaaattactcgagcctccttctcaggcaatataggcgttgctttaagaacagcat 212  Q
     |   ||||| ||||||||||| |||| ||| || |||||||| |||||  |||  |||||| ||||| ||||| ||||| ||| | ||||||||| |||    
T  37795036 ggcattctttcattcatgtaaacaagggctttgataatctgaaataaaacgactttagcctcgttctcgggcaaaataggtgtttccttaagaacatcat 37794937  T
Q  213 caagatcttt 222  Q
    ||||||||||    
T  37794936 caagatcttt 37794927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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