View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0942_low_134 (Length: 251)
Name: NF0942_low_134
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0942_low_134 |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 28 - 216
Target Start/End: Complemental strand, 13662182 - 13661998
Alignment:
| Q |
28 |
caaaaggaaatactcaattgatgtaacctggttcattacatatagtcacaaactacaaagtgttaggaaatagcagggttgaagnnnnnnnntaaataca |
127 |
Q |
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| T |
13662182 |
caaaaggaaatactcaattgatgtaacctggttcatta----tagtcacaaactacaaagtgttaggaaatagcaggat-gaagaagaaaaataaataca |
13662088 |
T |
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| Q |
128 |
attactgcacaagagtataatgtgaaaactccctaactctcacc-ccaatgttctaatacacccacactttcacaaaataaatatttaaa |
216 |
Q |
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| T |
13662087 |
attactgcacaagaatataatgtgaaaactctctaactctcacctccaatgtcctaatacacccacactctcacaaaattaatatttaaa |
13661998 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 218 - 251
Target Start/End: Original strand, 56162237 - 56162270
Alignment:
| Q |
218 |
tatagggggatattttgattccaagagtaagtgt |
251 |
Q |
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| T |
56162237 |
tatagggggatattttgactccaagagtaagtgt |
56162270 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 223 - 251
Target Start/End: Complemental strand, 36150328 - 36150300
Alignment:
| Q |
223 |
ggggatattttgattccaagagtaagtgt |
251 |
Q |
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| T |
36150328 |
ggggatattttgattccaagagtaagtgt |
36150300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 223 - 251
Target Start/End: Original strand, 50006588 - 50006616
Alignment:
| Q |
223 |
ggggatattttgattccaagagtaagtgt |
251 |
Q |
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| T |
50006588 |
ggggatattttgattccaagagtaagtgt |
50006616 |
T |
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