View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0942_low_135 (Length: 251)
Name: NF0942_low_135
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0942_low_135 |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 35789422 - 35789643
Alignment:
| Q |
1 |
cttttgcagcatgttcaatggaagcatcatactgtttccaaaagnnnnnnnggttatttccatgttggttcgattcccatcccagagcaacatcatttgg |
100 |
Q |
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| T |
35789422 |
cttttgcagcatgttcaatgggagcatcatactgtttccaaaagtttttttggttatttccatgttggttcgattcccatccccgagcaacatcatttgg |
35789521 |
T |
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| Q |
101 |
ttcataaggctttgttaacttttcgtcttctttgtccccccatcctggacccgataaggactgatccaagaagagagaactactgagaatcacgacttcc |
200 |
Q |
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| T |
35789522 |
ttcataaggctttgttaacttttcgtcttcttcgtccccccatcctggacccgataaggactgatccaagaagagagaactactgagaatcacgacttcc |
35789621 |
T |
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| Q |
201 |
tcgcctttttcttcaatgttgc |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
35789622 |
tcgcctttttcttcaatgttgc |
35789643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 54 - 145
Target Start/End: Original strand, 35799103 - 35799194
Alignment:
| Q |
54 |
ttatttccatgttggttcgattcccatcccagagcaacatcatttggttcataaggctttgttaacttttcgtcttctttgtccccccatcc |
145 |
Q |
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| T |
35799103 |
ttattttcatgttggtttgattcgcatcccagagcagcataatttggttcagaaggctttgttaacttttcgtcttcttcgtccccccatcc |
35799194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 74 - 203
Target Start/End: Original strand, 35785646 - 35785772
Alignment:
| Q |
74 |
ttcccatcccagagcaacatcatttggttcataaggctttgttaacttttcgtcttctttgtccccccatcctggacccgataaggactgatccaagaag |
173 |
Q |
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| T |
35785646 |
ttcccatccctgagcagcatagtttggttcagagggctttgttacgttttc---ttctttgtccccccatccaggaccagacaaggactgattcaagagg |
35785742 |
T |
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| Q |
174 |
agagaactactgagaatcacgacttcctcg |
203 |
Q |
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| T |
35785743 |
agagaactaccgagaatcacgatttcctcg |
35785772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 54 - 222
Target Start/End: Original strand, 35755524 - 35755695
Alignment:
| Q |
54 |
ttatttccatgttggttcgattcccatcccagagcaacatcatttggttcataaggctttgttaactt----ttcgtcttctttgtccccccatcctgga |
149 |
Q |
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|||||| ||||||| || |||||||||||| || || ||| |||||| ||| |||||||| | ||||| || ||||||| |||||||||||||||| |
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| T |
35755524 |
ttattttcatgttgatttgattcccatccctgaccagcataatttggctcagaaggctttct-aacttcttctttttcttcttcgtccccccatcctgga |
35755622 |
T |
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| Q |
150 |
cccgataaggactgatccaagaagagagaactactgagaatcacgacttcctcgcctttttcttcaatgttgc |
222 |
Q |
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| T |
35755623 |
cctgaaaaggaatgactcaagagaaaagagctactgagaatcacggcctcctcgcctttttcttctatgttgc |
35755695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 54 - 145
Target Start/End: Original strand, 35760670 - 35760761
Alignment:
| Q |
54 |
ttatttccatgttggttcgattcccatcccagagcaacatcatttggttcataaggctttgttaacttttcgtcttctttgtccccccatcc |
145 |
Q |
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|||||| ||||||||||||||||||||||| ||||| ||| ||| |||||| |||||||||||| | || ||||||| |||||||||||| |
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| T |
35760670 |
ttattttcatgttggttcgattcccatccctgagcagcataattcggttcagaaggctttgttacttctttttcttcttcgtccccccatcc |
35760761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 220
Target Start/End: Original strand, 35760778 - 35760851
Alignment:
| Q |
147 |
ggacccgataaggactgatccaagaagagagaactactgagaatcacgacttcctcgcctttttcttcaatgtt |
220 |
Q |
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| T |
35760778 |
ggaccggaaaaggactgattcaagagaagagaactaccaagaatcacagctgcctcgcctttttcttccatgtt |
35760851 |
T |
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