View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0942_low_139 (Length: 250)

Name: NF0942_low_139
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0942_low_139
NF0942_low_139
[»] chr4 (7 HSPs)
chr4 (160-224)||(16069942-16070006)
chr4 (45-92)||(16069827-16069874)
chr4 (169-224)||(25869594-25869649)
chr4 (163-225)||(51250538-51250600)
chr4 (183-221)||(52254424-52254462)
chr4 (169-222)||(47044721-47044774)
chr4 (186-226)||(38869789-38869829)
[»] chr1 (10 HSPs)
chr1 (164-226)||(51814493-51814555)
chr1 (169-224)||(9964442-9964497)
chr1 (169-226)||(16169993-16170050)
chr1 (169-226)||(19528342-19528399)
chr1 (164-225)||(29817674-29817735)
chr1 (186-226)||(8177197-8177237)
chr1 (186-226)||(11063577-11063617)
chr1 (186-226)||(22049843-22049883)
chr1 (186-222)||(25297793-25297829)
chr1 (186-226)||(44046163-44046203)
[»] chr7 (10 HSPs)
chr7 (163-226)||(27444994-27445057)
chr7 (169-221)||(48771942-48771994)
chr7 (169-224)||(21854552-21854607)
chr7 (164-226)||(23595728-23595790)
chr7 (186-236)||(29785306-29785356)
chr7 (169-226)||(22760867-22760924)
chr7 (185-226)||(27454743-27454784)
chr7 (190-226)||(17041027-17041063)
chr7 (162-226)||(23552115-23552179)
chr7 (186-226)||(25655243-25655283)
[»] chr2 (9 HSPs)
chr2 (169-226)||(4438994-4439051)
chr2 (164-226)||(34041603-34041665)
chr2 (164-226)||(37480074-37480136)
chr2 (164-212)||(44086851-44086899)
chr2 (163-222)||(39714990-39715049)
chr2 (164-221)||(29197396-29197453)
chr2 (186-226)||(12086144-12086184)
chr2 (186-226)||(19244130-19244170)
chr2 (169-221)||(24191842-24191894)
[»] chr3 (10 HSPs)
chr3 (169-224)||(26481931-26481986)
chr3 (169-224)||(31295459-31295514)
chr3 (164-226)||(5499422-5499484)
chr3 (169-224)||(4222145-4222200)
chr3 (163-226)||(15048076-15048139)
chr3 (163-226)||(46518626-46518689)
chr3 (186-224)||(28928896-28928934)
chr3 (169-226)||(17108913-17108970)
chr3 (186-222)||(4844530-4844566)
chr3 (186-222)||(4870226-4870262)
[»] chr6 (4 HSPs)
chr6 (172-222)||(24641209-24641259)
chr6 (164-226)||(10338189-10338251)
chr6 (166-222)||(6776626-6776682)
chr6 (169-225)||(32613156-32613212)
[»] scaffold0194 (1 HSPs)
scaffold0194 (165-226)||(13061-13122)
[»] chr8 (5 HSPs)
chr8 (169-226)||(8059636-8059693)
chr8 (163-236)||(28783058-28783131)
chr8 (182-221)||(32793236-32793275)
chr8 (164-226)||(19703502-19703564)
chr8 (169-226)||(23361664-23361721)
[»] scaffold0591 (1 HSPs)
scaffold0591 (172-225)||(5632-5685)
[»] chr5 (3 HSPs)
chr5 (169-206)||(22661218-22661255)
chr5 (169-221)||(7921062-7921114)
chr5 (186-222)||(14495824-14495860)


Alignment Details
Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 160 - 224
Target Start/End: Original strand, 16069942 - 16070006
Alignment:
Q  160 gtggaaactcacttgggttagcttgatggtattgacttgggatctgaaagtgtgctcctcctcaa 224  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||  ||||||||||||||||||    
T  16069942 gtggaaactcacttgggttagcttgatggtattaacttggaatcttgaagtgtgctcctcctcaa 16070006  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 45 - 92
Target Start/End: Original strand, 16069827 - 16069874
Alignment:
Q  45 tcaaattctataatatgatgagtaacattgtgaacaattttatgggca 92  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  16069827 tcaaattctataatattatgagtaacattgtgaacaattttatgggca 16069874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 169 - 224
Target Start/End: Complemental strand, 25869649 - 25869594
Alignment:
Q  169 cacttgggttagcttgatggtattgacttgggatctgaaagtgtgctcctcctcaa 224  Q
    |||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||    
T  25869649 cacttgggttagtttgatggtattgacttgagatctgagagtgtgctcctcctcaa 25869594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 225
Target Start/End: Complemental strand, 51250600 - 51250538
Alignment:
Q  163 gaaactcacttgggttagcttgatggtattgacttgggatctgaaagtgtgctcctcctcaag 225  Q
    ||||| |||||||||| || || |||||||| |||||||||||  |||||||||| |||||||    
T  51250600 gaaacccacttgggttggcctggtggtattggcttgggatctgggagtgtgctccgcctcaag 51250538  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Complemental strand, 52254462 - 52254424
Alignment:
Q  183 tgatggtattgacttgggatctgaaagtgtgctcctcct 221  Q
    |||||||||||||||||||| ||| ||||||||||||||    
T  52254462 tgatggtattgacttgggatatgagagtgtgctcctcct 52254424  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 222
Target Start/End: Original strand, 47044721 - 47044774
Alignment:
Q  169 cacttgggttagcttgatggtattgacttgggatctgaaagtgtgctcctcctc 222  Q
    ||||||| || || || ||||||||||||||||||||| ||| |||||||||||    
T  47044721 cacttggattggcctggtggtattgacttgggatctgagagtttgctcctcctc 47044774  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 38869789 - 38869829
Alignment:
Q  186 tggtattgacttgggatctgaaagtgtgctcctcctcaagg 226  Q
    |||||||| |||||||||||  |||||||||||||||||||    
T  38869789 tggtattggcttgggatctgggagtgtgctcctcctcaagg 38869829  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 164 - 226
Target Start/End: Original strand, 51814493 - 51814555
Alignment:
Q  164 aaactcacttgggttagcttgatggtattgacttgggatctgaaagtgtgctcctcctcaagg 226  Q
    |||| |||||||||| || |||||||||||||||| ||||||| |||||||||||||||||||    
T  51814493 aaacccacttgggttggcctgatggtattgacttgagatctgagagtgtgctcctcctcaagg 51814555  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 224
Target Start/End: Original strand, 9964442 - 9964497
Alignment:
Q  169 cacttgggttagcttgatggtattgacttgggatctgaaagtgtgctcctcctcaa 224  Q
    ||||||||||||| ||||| |||||||||||||||||  ||||||||| |||||||    
T  9964442 cacttgggttagcctgatgttattgacttgggatctgggagtgtgctcttcctcaa 9964497  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 226
Target Start/End: Complemental strand, 16170050 - 16169993
Alignment:
Q  169 cacttgggttagcttgatggtattgacttgggatctgaaagtgtgctcctcctcaagg 226  Q
    ||||||||||||| || |||||||||||||||| |||  |||||| ||||||||||||    
T  16170050 cacttgggttagcctggtggtattgacttgggacctgggagtgtgttcctcctcaagg 16169993  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 226
Target Start/End: Complemental strand, 19528399 - 19528342
Alignment:
Q  169 cacttgggttagcttgatggtattgacttgggatctgaaagtgtgctcctcctcaagg 226  Q
    |||||||||| || || |||||||| ||||||||||   |||||||||||||||||||    
T  19528399 cacttgggttggcctggtggtattggcttgggatctatgagtgtgctcctcctcaagg 19528342  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 225
Target Start/End: Original strand, 29817674 - 29817735
Alignment:
Q  164 aaactcacttgggttagcttgatggtattgacttgggatctgaaagtgtgctcctcctcaag 225  Q
    ||||||||||||||| || || || |||||||||| || |||| |||||||||||| |||||    
T  29817674 aaactcacttgggttggcctggtgatattgacttgagacctgagagtgtgctcctcttcaag 29817735  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 226
Target Start/End: Complemental strand, 8177237 - 8177197
Alignment:
Q  186 tggtattgacttgggatctgaaagtgtgctcctcctcaagg 226  Q
    |||||||| |||||||||||  |||||||||||||||||||    
T  8177237 tggtattggcttgggatctgggagtgtgctcctcctcaagg 8177197  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 11063577 - 11063617
Alignment:
Q  186 tggtattgacttgggatctgaaagtgtgctcctcctcaagg 226  Q
    |||||||| ||||||| ||||||||||| ||||||||||||    
T  11063577 tggtattggcttgggacctgaaagtgtgttcctcctcaagg 11063617  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 226
Target Start/End: Complemental strand, 22049883 - 22049843
Alignment:
Q  186 tggtattgacttgggatctgaaagtgtgctcctcctcaagg 226  Q
    ||||||| ||||||||||||| |||||||| ||||||||||    
T  22049883 tggtattaacttgggatctgagagtgtgcttctcctcaagg 22049843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Original strand, 25297793 - 25297829
Alignment:
Q  186 tggtattgacttgggatctgaaagtgtgctcctcctc 222  Q
    |||||||||||| |||||||| |||||||||||||||    
T  25297793 tggtattgacttaggatctgagagtgtgctcctcctc 25297829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 226
Target Start/End: Complemental strand, 44046203 - 44046163
Alignment:
Q  186 tggtattgacttgggatctgaaagtgtgctcctcctcaagg 226  Q
    |||||||| |||||||||||  |||||||||||||||||||    
T  44046203 tggtattggcttgggatctgggagtgtgctcctcctcaagg 44046163  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 163 - 226
Target Start/End: Original strand, 27444994 - 27445057
Alignment:
Q  163 gaaactcacttgggttagcttgatggtattgacttgggatctgaaagtgtgctcctcctcaagg 226  Q
    ||||||||||||||||  | ||||||||||||||||||| | || |||||||||||||||||||    
T  27444994 gaaactcacttgggttgacatgatggtattgacttgggaccagagagtgtgctcctcctcaagg 27445057  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 221
Target Start/End: Original strand, 48771942 - 48771994
Alignment:
Q  169 cacttgggttagcttgatggtattgacttgggatctgaaagtgtgctcctcct 221  Q
    |||||||||| ||||| |||||||| |||||||||||  ||||||||||||||    
T  48771942 cacttgggttggcttggtggtattggcttgggatctgggagtgtgctcctcct 48771994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 224
Target Start/End: Original strand, 21854552 - 21854607
Alignment:
Q  169 cacttgggttagcttgatggtattgacttgggatctgaaagtgtgctcctcctcaa 224  Q
    |||||||||| || ||||||||||| || ||||||||  |||||||||||||||||    
T  21854552 cacttgggttggcctgatggtattggctagggatctgggagtgtgctcctcctcaa 21854607  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 226
Target Start/End: Original strand, 23595728 - 23595790
Alignment:
Q  164 aaactcacttgggttagcttgatggtattgacttgggatctgaaagtgtgctcctcctcaagg 226  Q
    ||||||||||||||| |  || ||||||||||||| |||||   |||||||||||||||||||    
T  23595728 aaactcacttgggttggtctggtggtattgacttgagatctcggagtgtgctcctcctcaagg 23595790  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 236
Target Start/End: Complemental strand, 29785356 - 29785306
Alignment:
Q  186 tggtattgacttgggatctgaaagtgtgctcctcctcaaggcctcttgttc 236  Q
    |||||| | ||||||||||| |||||||||||||||||||| ||| |||||    
T  29785356 tggtataggcttgggatctggaagtgtgctcctcctcaaggtctcatgttc 29785306  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 226
Target Start/End: Original strand, 22760867 - 22760924
Alignment:
Q  169 cacttgggttagcttgatggtattgacttgggatctgaaagtgtgctcctcctcaagg 226  Q
    |||||||||| |  || |||||||||||||||| |||  |||||||||||||||||||    
T  22760867 cacttgggttggtctggtggtattgacttgggacctgggagtgtgctcctcctcaagg 22760924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 226
Target Start/End: Original strand, 27454743 - 27454784
Alignment:
Q  185 atggtattgacttgggatctgaaagtgtgctcctcctcaagg 226  Q
    ||||||||||||||||| | || |||||||||||||||||||    
T  27454743 atggtattgacttgggaccagagagtgtgctcctcctcaagg 27454784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 226
Target Start/End: Complemental strand, 17041063 - 17041027
Alignment:
Q  190 attgacttgggatctgaaagtgtgctcctcctcaagg 226  Q
    |||| ||||||||||| ||||||||||||||||||||    
T  17041063 attggcttgggatctggaagtgtgctcctcctcaagg 17041027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 226
Target Start/End: Original strand, 23552115 - 23552179
Alignment:
Q  162 ggaaactcacttgggttagcttgatggtattgacttgggatctgaaagtgtgctcctcctcaagg 226  Q
    |||||| |||||||||| || |  || ||||||||||||| |||  |||||||||||||||||||    
T  23552115 ggaaacccacttgggttggcctagtgctattgacttgggacctgggagtgtgctcctcctcaagg 23552179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 226
Target Start/End: Complemental strand, 25655283 - 25655243
Alignment:
Q  186 tggtattgacttgggatctgaaagtgtgctcctcctcaagg 226  Q
    ||||||||||||||||||||  |||||| ||||||||||||    
T  25655283 tggtattgacttgggatctgtgagtgtgatcctcctcaagg 25655243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 226
Target Start/End: Complemental strand, 4439051 - 4438994
Alignment:
Q  169 cacttgggttagcttgatggtattgacttgggatctgaaagtgtgctcctcctcaagg 226  Q
    |||||||||| || | |||||||| ||||||||||||| |||||||||||||||||||    
T  4439051 cacttgggttggcctaatggtattaacttgggatctgagagtgtgctcctcctcaagg 4438994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 164 - 226
Target Start/End: Complemental strand, 34041665 - 34041603
Alignment:
Q  164 aaactcacttgggttagcttgatggtattgacttgggatctgaaagtgtgctcctcctcaagg 226  Q
    |||| |||||||||| || |  |||||||||||| |||||||| |||||||||||||||||||    
T  34041665 aaacccacttgggttggcctagtggtattgacttaggatctgagagtgtgctcctcctcaagg 34041603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 164 - 226
Target Start/End: Original strand, 37480074 - 37480136
Alignment:
Q  164 aaactcacttgggttagcttgatggtattgacttgggatctgaaagtgtgctcctcctcaagg 226  Q
    |||| |||||||||| || || |||||||| ||||||| |||| |||||||||||||||||||    
T  37480074 aaacccacttgggttggcctggtggtattggcttgggacctgagagtgtgctcctcctcaagg 37480136  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 44086851 - 44086899
Alignment:
Q  164 aaactcacttgggttagcttgatggtattgacttgggatctgaaagtgt 212  Q
    |||||||||||| |||| | | |||||||||||||||||||||||||||    
T  44086851 aaactcacttggattagttcggtggtattgacttgggatctgaaagtgt 44086899  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 222
Target Start/End: Original strand, 39714990 - 39715049
Alignment:
Q  163 gaaactcacttgggttagcttgatggtattgacttgggatctgaaagtgtgctcctcctc 222  Q
    ||||| |||||||||| || || |||||||||||||||| |||  |||||||||||||||    
T  39714990 gaaacccacttgggttggcatggtggtattgacttgggacctgggagtgtgctcctcctc 39715049  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 221
Target Start/End: Complemental strand, 29197453 - 29197396
Alignment:
Q  164 aaactcacttgggttagcttgatggtattgacttgggatctgaaagtgtgctcctcct 221  Q
    |||| |||||||||| ||||| ||||||||||||||||  ||  ||||||||||||||    
T  29197453 aaacccacttgggttggcttggtggtattgacttgggacttgggagtgtgctcctcct 29197396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 226
Target Start/End: Complemental strand, 12086184 - 12086144
Alignment:
Q  186 tggtattgacttgggatctgaaagtgtgctcctcctcaagg 226  Q
    |||||||| ||||||| ||| ||||||||||||||||||||    
T  12086184 tggtattggcttgggacctggaagtgtgctcctcctcaagg 12086144  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 19244130 - 19244170
Alignment:
Q  186 tggtattgacttgggatctgaaagtgtgctcctcctcaagg 226  Q
    |||||||||||||||| |||| ||||||||||||| |||||    
T  19244130 tggtattgacttgggacctgagagtgtgctcctccccaagg 19244170  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 221
Target Start/End: Original strand, 24191842 - 24191894
Alignment:
Q  169 cacttgggttagcttgatggtattgacttgggatctgaaagtgtgctcctcct 221  Q
    |||||| ||| || ||||||||||| ||||||| |||| ||||||||||||||    
T  24191842 cacttgagttggcctgatggtattggcttgggacctgagagtgtgctcctcct 24191894  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 224
Target Start/End: Original strand, 26481931 - 26481986
Alignment:
Q  169 cacttgggttagcttgatggtattgacttgggatctgaaagtgtgctcctcctcaa 224  Q
    |||||||||||||||| ||||| || ||||||| |||| |||||||||||||||||    
T  26481931 cacttgggttagcttggtggtaatggcttgggacctgagagtgtgctcctcctcaa 26481986  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 224
Target Start/End: Original strand, 31295459 - 31295514
Alignment:
Q  169 cacttgggttagcttgatggtattgacttgggatctgaaagtgtgctcctcctcaa 224  Q
    |||||||||| | ||||||||||||| |||||||||  ||||||||||||||||||    
T  31295459 cacttgggttggtttgatggtattgatttgggatctagaagtgtgctcctcctcaa 31295514  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 164 - 226
Target Start/End: Complemental strand, 5499484 - 5499422
Alignment:
Q  164 aaactcacttgggttagcttgatggtattgacttgggatctgaaagtgtgctcctcctcaagg 226  Q
    |||| |||||||||| || || ||||||||||||| ||||||| |||||||||||||| ||||    
T  5499484 aaacccacttgggttggcctggtggtattgacttgagatctgagagtgtgctcctccttaagg 5499422  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 224
Target Start/End: Original strand, 4222145 - 4222200
Alignment:
Q  169 cacttgggttagcttgatggtattgacttgggatctgaaagtgtgctcctcctcaa 224  Q
    |||||||||| ||||  |||||||| |||||||||||  |||||||||||||||||    
T  4222145 cacttgggttggcttagtggtattggcttgggatctgggagtgtgctcctcctcaa 4222200  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 226
Target Start/End: Complemental strand, 15048139 - 15048076
Alignment:
Q  163 gaaactcacttgggttagcttgatggtattgacttgggatctgaaagtgtgctcctcctcaagg 226  Q
    ||||| |||||||||| |||| ||||||| | |||||||||||  | |||||||||||||||||    
T  15048139 gaaacccacttgggttggcttaatggtataggcttgggatctgggaatgtgctcctcctcaagg 15048076  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 226
Target Start/End: Original strand, 46518626 - 46518689
Alignment:
Q  163 gaaactcacttgggttagcttgatggtattgacttgggatctgaaagtgtgctcctcctcaagg 226  Q
    ||||| |||||||||| || |  |||||||| |||||||||||  |||||||||||||||||||    
T  46518626 gaaacccacttgggttggcatagtggtattggcttgggatctgggagtgtgctcctcctcaagg 46518689  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 224
Target Start/End: Complemental strand, 28928934 - 28928896
Alignment:
Q  186 tggtattgacttgggatctgaaagtgtgctcctcctcaa 224  Q
    |||||||| |||||||||||| |||||||||||||||||    
T  28928934 tggtattggcttgggatctgagagtgtgctcctcctcaa 28928896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 226
Target Start/End: Complemental strand, 17108970 - 17108913
Alignment:
Q  169 cacttgggttagcttgatggtattgacttgggatctgaaagtgtgctcctcctcaagg 226  Q
    |||||||||||| ||| ||||||||||| | ||| ||  |||||||||||||||||||    
T  17108970 cacttgggttagtttggtggtattgactggagatgtgggagtgtgctcctcctcaagg 17108913  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Complemental strand, 4844566 - 4844530
Alignment:
Q  186 tggtattgacttgggatctgaaagtgtgctcctcctc 222  Q
    ||||||||||||||||||||  |||||||||||||||    
T  4844566 tggtattgacttgggatctgggagtgtgctcctcctc 4844530  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Complemental strand, 4870262 - 4870226
Alignment:
Q  186 tggtattgacttgggatctgaaagtgtgctcctcctc 222  Q
    ||||||||||||||||||||  |||||||||||||||    
T  4870262 tggtattgacttgggatctgggagtgtgctcctcctc 4870226  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 172 - 222
Target Start/End: Complemental strand, 24641259 - 24641209
Alignment:
Q  172 ttgggttagcttgatggtattgacttgggatctgaaagtgtgctcctcctc 222  Q
    ||||||| ||||| ||||||||||||||||||||  |||||||||||||||    
T  24641259 ttgggttggcttggtggtattgacttgggatctgggagtgtgctcctcctc 24641209  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 226
Target Start/End: Complemental strand, 10338251 - 10338189
Alignment:
Q  164 aaactcacttgggttagcttgatggtattgacttgggatctgaaagtgtgctcctcctcaagg 226  Q
    ||||||||||||||| || || |||||||| ||||||| ||   |||||||||||||||||||    
T  10338251 aaactcacttgggttggcatggtggtattggcttgggacctaggagtgtgctcctcctcaagg 10338189  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 222
Target Start/End: Complemental strand, 6776682 - 6776626
Alignment:
Q  166 actcacttgggttagcttgatggtattgacttgggatctgaaagtgtgctcctcctc 222  Q
    ||||||||||||| || || |||||||| |||||||||||   ||||||||||||||    
T  6776682 actcacttgggttggcctggtggtattggcttgggatctgggggtgtgctcctcctc 6776626  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 32613212 - 32613156
Alignment:
Q  169 cacttgggttagcttgatggtattgacttgggatctgaaagtgtgctcctcctcaag 225  Q
    |||||||||| || || ||||||||||||||| ||||  ||||||||||| ||||||    
T  32613212 cacttgggttggcctggtggtattgacttggggtctgggagtgtgctccttctcaag 32613156  T

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Target: scaffold0194 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 226
Target Start/End: Complemental strand, 13122 - 13061
Alignment:
Q  165 aactcacttgggttagcttgatggtattgacttgggatctgaaagtgtgctcctcctcaagg 226  Q
    ||||||||| |||| ||||| |||||||| |||| ||||||  |||||||||||||||||||    
T  13122 aactcacttcggttggcttggtggtattggcttgagatctgggagtgtgctcctcctcaagg 13061  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 226
Target Start/End: Original strand, 8059636 - 8059693
Alignment:
Q  169 cacttgggttagcttgatggtattgacttgggatctgaaagtgtgctcctcctcaagg 226  Q
    |||||||||| || ||||||||||||||||| || ||| |||||| ||||||||||||    
T  8059636 cacttgggttggcctgatggtattgacttggcatgtgagagtgtgatcctcctcaagg 8059693  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 236
Target Start/End: Original strand, 28783058 - 28783131
Alignment:
Q  163 gaaactcacttgggttagcttgatggtattgacttgggatctgaaagtgtgctcctcctcaaggcctcttgttc 236  Q
    ||||| |||||||||| ||||| |||||||| |||| || |||  ||||||||||||||||||| ||| |||||    
T  28783058 gaaacccacttgggttggcttggtggtattggcttgagacctgggagtgtgctcctcctcaaggtctcatgttc 28783131  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 221
Target Start/End: Complemental strand, 32793275 - 32793236
Alignment:
Q  182 ttgatggtattgacttgggatctgaaagtgtgctcctcct 221  Q
    ||||||||| ||||||| ||||||||||||||||||||||    
T  32793275 ttgatggtactgacttgagatctgaaagtgtgctcctcct 32793236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 226
Target Start/End: Complemental strand, 19703564 - 19703502
Alignment:
Q  164 aaactcacttgggttagcttgatggtattgacttgggatctgaaagtgtgctcctcctcaagg 226  Q
    |||| |||||||||| || |  |||||||| ||||||| |||| |||||||||||||||||||    
T  19703564 aaacccacttgggttggcctagtggtattggcttgggacctgagagtgtgctcctcctcaagg 19703502  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 226
Target Start/End: Complemental strand, 23361721 - 23361664
Alignment:
Q  169 cacttgggttagcttgatggtattgacttgggatctgaaagtgtgctcctcctcaagg 226  Q
    ||||||||||  | || ||||||||||||||||| ||  |||||||||||||||||||    
T  23361721 cacttgggttgacctggtggtattgacttgggatatgggagtgtgctcctcctcaagg 23361664  T

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Target: scaffold0591 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0591
Description:

Target: scaffold0591; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 5632 - 5685
Alignment:
Q  172 ttgggttagcttgatggtattgacttgggatctgaaagtgtgctcctcctcaag 225  Q
    |||||||  |||||| ||||||||||||||||||| ||||| ||| ||||||||    
T  5632 ttgggttgacttgatagtattgacttgggatctgagagtgtactcttcctcaag 5685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 206
Target Start/End: Original strand, 22661218 - 22661255
Alignment:
Q  169 cacttgggttagcttgatggtattgacttgggatctga 206  Q
    ||||||||||||| ||||| ||||||||||||||||||    
T  22661218 cacttgggttagcctgatgatattgacttgggatctga 22661255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 221
Target Start/End: Complemental strand, 7921114 - 7921062
Alignment:
Q  169 cacttgggttagcttgatggtattgacttgggatctgaaagtgtgctcctcct 221  Q
    |||||||||||||||| ||||||||| ||||||| | | ||||||||| ||||    
T  7921114 cacttgggttagcttggtggtattgatttgggatgtaagagtgtgctcttcct 7921062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Complemental strand, 14495860 - 14495824
Alignment:
Q  186 tggtattgacttgggatctgaaagtgtgctcctcctc 222  Q
    ||||||||||||||||||||  |||||||||||||||    
T  14495860 tggtattgacttgggatctgggagtgtgctcctcctc 14495824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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