View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0942_low_141 (Length: 250)
Name: NF0942_low_141
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0942_low_141 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 39092511 - 39092276
Alignment:
| Q |
1 |
caatttaacaccatgggatctccgattccttccacttgaaaccatccaaacaggccttctttttcaccaacaacccattcctagcacatcaaaccaaaac |
100 |
Q |
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| T |
39092511 |
caatttaacaccatgggatctccgattccttccacttgaaaccatccaaaaaggccttctttttcaccaacaacccattcctagcacatcaaaccaaaac |
39092412 |
T |
|
| Q |
101 |
caaatcaaccatttgaaacaaacactttccacaacactttcctatttcccacccttaacgggccgtcttataatcacccaacacaacgtgaccacaaaca |
200 |
Q |
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| T |
39092411 |
caaatcaaccatttgaaacaaaccctttccacaacactttcctatttcccacccttaacgggccgtcttataatcacccaacacaacgtgaccacaaaca |
39092312 |
T |
|
| Q |
201 |
acaacaataacacatcatgttccatcatttgcaaca |
236 |
Q |
| |
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||||||| |||||||||||||||||| ||||||||| |
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| T |
39092311 |
acaacaacaacacatcatgttccatcctttgcaaca |
39092276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 6 - 236
Target Start/End: Complemental strand, 39071987 - 39071775
Alignment:
| Q |
6 |
taacaccatgggatctccgattccttccacttgaaaccatccaaacaggccttctttttcaccaacaacccattcctagcacatcaaaccaaaaccaaat |
105 |
Q |
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| T |
39071987 |
taacaccatgggatctccaattccttccacttgaaaccatccaaagaggccatcttttccaccaac---ccattcc---------aaaccaaaaccaaat |
39071900 |
T |
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| Q |
106 |
caaccatttgaaacaaacactttccacaacactttcctatttcccacccttaacgggccgtcttataatcacccaacacaacgtgaccacaaacaacaac |
205 |
Q |
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| T |
39071899 |
caaccatttgaaacaaacactttctacaacactctcttatttcccacccttaa---gccgtcttataatcacccaacacaacgtgaccacaaacaacaac |
39071803 |
T |
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| Q |
206 |
aataacacatcatgttccatcatttgcaaca |
236 |
Q |
| |
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| T |
39071802 |
---aacacatcatgttccataatttgcaaca |
39071775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 90 - 236
Target Start/End: Complemental strand, 39089025 - 39088885
Alignment:
| Q |
90 |
caaaccaaaaccaaatcaaccatttgaaacaaacactttccacaacactttcctatttcccacccttaacgggccgtcttataatcacccaacacaacgt |
189 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
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| T |
39089025 |
caaaccaaaaccaaatcaaccatttgaaacaaacactttccacaacactttcctatttcccacccttaacaggccgtcttataatcacccaacacaatgt |
39088926 |
T |
|
| Q |
190 |
gaccacaaacaacaacaataacacatcatgttccatcatttgcaaca |
236 |
Q |
| |
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| T |
39088925 |
gaccacaaacaac------aacacatcatgttccatcatttgcaaca |
39088885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 90 - 236
Target Start/End: Complemental strand, 39083386 - 39083231
Alignment:
| Q |
90 |
caaaccaaaaccaaatcaaccatttgaaacaaacactttccacaacactttcctatttcccacccttaacgggccgtcttataatcacccaacacaacgt |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||| |
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|
| T |
39083386 |
caaaccaaaaccaaatcaaccatttgaaacaaacactttctacaacactttcctatttcccactcttaacaggccgtctcataatcacccaacacaacgt |
39083287 |
T |
|
| Q |
190 |
gaccacaaacaacaacaataaca---------catcatgttccatcatttgcaaca |
236 |
Q |
| |
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|||||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
39083286 |
gaccacaaacaacaacaacaacaacaacaatgcatcatgttccatcatttgcaaca |
39083231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 39083449 - 39083384
Alignment:
| Q |
5 |
ttaacaccatgggatctccgattccttccacttgaaaccatccaaacaggccttctttttcaccaa |
70 |
Q |
| |
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||||||||||||||||| | ||| || ||||||||||||||||||| |||||||||||| |||||| |
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| T |
39083449 |
ttaacaccatgggatcttcaatttctcccacttgaaaccatccaaaaaggccttcttttccaccaa |
39083384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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