View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0942_low_142 (Length: 244)

Name: NF0942_low_142
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0942_low_142
NF0942_low_142
[»] chr2 (30 HSPs)
chr2 (29-130)||(20242667-20242768)
chr2 (34-129)||(28596492-28596587)
chr2 (29-130)||(24009314-24009414)
chr2 (31-128)||(2438661-2438758)
chr2 (31-131)||(18840952-18841052)
chr2 (37-130)||(34993922-34994015)
chr2 (32-80)||(5367213-5367261)
chr2 (31-130)||(30404790-30404889)
chr2 (31-68)||(31808097-31808134)
chr2 (29-76)||(20922922-20922969)
chr2 (59-130)||(35056927-35056998)
chr2 (31-130)||(37558997-37559096)
chr2 (31-86)||(40361738-40361793)
chr2 (29-91)||(37411223-37411285)
chr2 (81-130)||(10535685-10535734)
chr2 (29-70)||(17776605-17776646)
chr2 (29-62)||(21616780-21616813)
chr2 (31-76)||(34691799-34691844)
chr2 (31-76)||(34714211-34714256)
chr2 (66-131)||(36096303-36096368)
chr2 (29-70)||(38355887-38355928)
chr2 (29-69)||(15909633-15909673)
chr2 (31-139)||(15972893-15973001)
chr2 (74-130)||(18054716-18054772)
chr2 (29-69)||(18889592-18889632)
chr2 (29-69)||(32749826-32749866)
chr2 (29-69)||(34784983-34785023)
chr2 (29-65)||(35449531-35449567)
chr2 (31-131)||(38117098-38117198)
chr2 (29-69)||(44860338-44860378)
[»] chr3 (32 HSPs)
chr3 (29-131)||(35222956-35223058)
chr3 (29-130)||(13845465-13845566)
chr3 (31-130)||(40993275-40993374)
chr3 (29-90)||(2941576-2941637)
chr3 (35-123)||(3631708-3631796)
chr3 (31-130)||(55401095-55401194)
chr3 (31-130)||(20503485-20503584)
chr3 (29-130)||(11251996-11252095)
chr3 (29-129)||(8789489-8789591)
chr3 (33-128)||(25775531-25775624)
chr3 (29-76)||(49505148-49505195)
chr3 (29-91)||(25093520-25093582)
chr3 (31-76)||(7928470-7928515)
chr3 (31-91)||(10954972-10955032)
chr3 (31-130)||(18426969-18427068)
chr3 (71-130)||(41961579-41961638)
chr3 (30-80)||(8842348-8842398)
chr3 (59-129)||(14216951-14217021)
chr3 (59-129)||(14223080-14223150)
chr3 (65-131)||(17005547-17005613)
chr3 (29-75)||(20691337-20691383)
chr3 (65-131)||(25064972-25065038)
chr3 (29-91)||(45451571-45451633)
chr3 (29-70)||(13620764-13620805)
chr3 (29-85)||(6780404-6780460)
chr3 (31-75)||(10268481-10268525)
chr3 (29-69)||(11313801-11313841)
chr3 (63-91)||(16192701-16192729)
chr3 (31-91)||(20389636-20389694)
chr3 (31-91)||(24633380-24633440)
chr3 (31-128)||(28918021-28918120)
chr3 (29-57)||(32429393-32429421)
[»] chr4 (36 HSPs)
chr4 (29-130)||(35161054-35161155)
chr4 (31-132)||(23292924-23293025)
chr4 (31-131)||(35157924-35158024)
chr4 (29-91)||(8402721-8402783)
chr4 (59-131)||(5414100-5414172)
chr4 (31-131)||(40179575-40179675)
chr4 (29-132)||(8423656-8423759)
chr4 (59-130)||(22234819-22234890)
chr4 (31-130)||(49431046-49431145)
chr4 (31-85)||(54580008-54580062)
chr4 (31-131)||(28964187-28964287)
chr4 (29-130)||(36635342-36635449)
chr4 (31-129)||(3947702-3947805)
chr4 (29-112)||(9996858-9996941)
chr4 (29-80)||(10499260-10499311)
chr4 (31-130)||(12895214-12895313)
chr4 (31-130)||(36509032-36509131)
chr4 (59-129)||(12323968-12324038)
chr4 (60-130)||(24613630-24613700)
chr4 (31-91)||(4157169-4157229)
chr4 (31-91)||(4157456-4157516)
chr4 (31-91)||(12797317-12797377)
chr4 (29-105)||(19097859-19097935)
chr4 (31-130)||(16073414-16073513)
chr4 (71-130)||(19482739-19482798)
chr4 (31-98)||(38846984-38847051)
chr4 (29-131)||(30103296-30103397)
chr4 (29-63)||(40613468-40613502)
chr4 (59-133)||(46083917-46083991)
chr4 (29-66)||(903940-903977)
chr4 (29-70)||(5775358-5775399)
chr4 (31-91)||(2361954-2362014)
chr4 (41-77)||(20950420-20950456)
chr4 (29-61)||(22440609-22440641)
chr4 (31-91)||(29205464-29205524)
chr4 (31-130)||(34306744-34306843)
[»] chr1 (43 HSPs)
chr1 (33-129)||(12918967-12919063)
chr1 (1-129)||(40258874-40259002)
chr1 (30-128)||(29163323-29163421)
chr1 (29-130)||(30749858-30749959)
chr1 (29-130)||(30771309-30771410)
chr1 (29-129)||(10577676-10577776)
chr1 (31-130)||(5898206-5898305)
chr1 (31-130)||(18337349-18337448)
chr1 (31-130)||(37598852-37598950)
chr1 (29-130)||(7918154-7918252)
chr1 (29-69)||(25361904-25361944)
chr1 (58-130)||(32461393-32461465)
chr1 (29-93)||(36878479-36878543)
chr1 (29-85)||(40181889-40181945)
chr1 (31-130)||(51410045-51410144)
chr1 (59-130)||(25934675-25934746)
chr1 (31-130)||(38078601-38078700)
chr1 (31-137)||(18190041-18190147)
chr1 (29-130)||(2896061-2896162)
chr1 (31-131)||(22515826-22515926)
chr1 (31-131)||(46348322-46348422)
chr1 (31-91)||(1815277-1815337)
chr1 (29-69)||(34371731-34371771)
chr1 (29-69)||(44482248-44482288)
chr1 (29-68)||(1864882-1864921)
chr1 (59-130)||(9828103-9828174)
chr1 (29-68)||(10233271-10233310)
chr1 (30-81)||(17705576-17705626)
chr1 (29-75)||(2784574-2784620)
chr1 (31-85)||(13997903-13997957)
chr1 (65-131)||(18556384-18556450)
chr1 (29-75)||(23636044-23636090)
chr1 (29-91)||(43492473-43492535)
chr1 (29-78)||(14332634-14332683)
chr1 (29-62)||(25098563-25098596)
chr1 (31-76)||(52903269-52903314)
chr1 (32-76)||(13436479-13436523)
chr1 (29-61)||(19324580-19324612)
chr1 (29-69)||(20157351-20157391)
chr1 (29-85)||(28674818-28674874)
chr1 (29-69)||(34712384-34712424)
chr1 (58-130)||(41597410-41597482)
chr1 (59-131)||(47989556-47989628)
[»] chr8 (27 HSPs)
chr8 (29-128)||(3025569-3025668)
chr8 (31-130)||(3951476-3951575)
chr8 (30-129)||(43737752-43737851)
chr8 (29-130)||(14134717-14134818)
chr8 (59-133)||(34450958-34451032)
chr8 (33-85)||(9414860-9414912)
chr8 (29-128)||(20679337-20679436)
chr8 (29-130)||(26902104-26902216)
chr8 (29-91)||(33405363-33405425)
chr8 (29-84)||(4786324-4786379)
chr8 (31-130)||(36450694-36450793)
chr8 (31-108)||(31557016-31557093)
chr8 (29-85)||(40332209-40332265)
chr8 (29-128)||(926730-926829)
chr8 (34-117)||(8293848-8293931)
chr8 (31-130)||(18407739-18407838)
chr8 (51-85)||(126332-126366)
chr8 (31-69)||(11927087-11927125)
chr8 (29-75)||(13844591-13844637)
chr8 (29-63)||(34897103-34897137)
chr8 (29-86)||(37283796-37283851)
chr8 (32-69)||(8847277-8847314)
chr8 (29-62)||(11803277-11803310)
chr8 (29-74)||(12606825-12606870)
chr8 (60-129)||(29447040-29447109)
chr8 (33-69)||(24362203-24362239)
chr8 (29-77)||(31236570-31236618)
[»] chr6 (36 HSPs)
chr6 (31-130)||(34595154-34595253)
chr6 (29-129)||(9658897-9658998)
chr6 (31-131)||(28152118-28152218)
chr6 (29-130)||(17327590-17327696)
chr6 (196-236)||(11968709-11968749)
chr6 (31-91)||(33001268-33001328)
chr6 (59-130)||(18367895-18367966)
chr6 (29-80)||(19040370-19040421)
chr6 (31-130)||(28715315-28715414)
chr6 (29-130)||(7377997-7378098)
chr6 (29-130)||(4388103-4388199)
chr6 (30-82)||(7740660-7740712)
chr6 (59-131)||(16488518-16488590)
chr6 (29-128)||(7265535-7265634)
chr6 (29-131)||(13360312-13360413)
chr6 (31-130)||(13789174-13789273)
chr6 (31-130)||(13797793-13797892)
chr6 (29-144)||(32511592-32511707)
chr6 (127-160)||(11968749-11968782)
chr6 (29-69)||(9025495-9025535)
chr6 (31-91)||(24645501-24645561)
chr6 (35-130)||(4877967-4878061)
chr6 (31-113)||(12627534-12627616)
chr6 (31-130)||(16833328-16833427)
chr6 (31-129)||(17841530-17841628)
chr6 (29-87)||(30851620-30851676)
chr6 (31-69)||(7027262-7027300)
chr6 (29-63)||(11591877-11591911)
chr6 (31-128)||(12696344-12696446)
chr6 (29-91)||(13364684-13364746)
chr6 (29-63)||(26562707-26562741)
chr6 (31-84)||(29020932-29020985)
chr6 (29-85)||(31579212-31579266)
chr6 (29-69)||(9617452-9617492)
chr6 (29-69)||(9629401-9629441)
chr6 (29-69)||(14796191-14796231)
[»] chr5 (27 HSPs)
chr5 (33-131)||(30098977-30099075)
chr5 (31-130)||(21576685-21576784)
chr5 (29-130)||(42029770-42029871)
chr5 (31-130)||(43564901-43565000)
chr5 (29-130)||(28588614-28588715)
chr5 (29-117)||(26312787-26312875)
chr5 (29-128)||(30502330-30502429)
chr5 (29-128)||(30542673-30542772)
chr5 (59-129)||(6401557-6401627)
chr5 (31-128)||(21190998-21191095)
chr5 (59-131)||(21814320-21814392)
chr5 (29-84)||(12927672-12927727)
chr5 (31-130)||(42893380-42893479)
chr5 (29-131)||(17123066-17123167)
chr5 (61-131)||(30098387-30098457)
chr5 (29-130)||(27932253-27932354)
chr5 (29-90)||(32630715-32630776)
chr5 (29-85)||(18421826-18421882)
chr5 (29-91)||(23012387-23012449)
chr5 (29-63)||(39758290-39758324)
chr5 (29-63)||(41091264-41091298)
chr5 (29-62)||(6471897-6471930)
chr5 (29-85)||(6770561-6770615)
chr5 (31-80)||(15884008-15884057)
chr5 (29-69)||(3966521-3966561)
chr5 (29-61)||(24273039-24273071)
chr5 (29-61)||(24389143-24389175)
[»] chr7 (27 HSPs)
chr7 (29-130)||(18212973-18213074)
chr7 (29-130)||(21880170-21880271)
chr7 (29-129)||(32287404-32287504)
chr7 (29-130)||(598226-598327)
chr7 (29-131)||(5835265-5835367)
chr7 (32-129)||(18035806-18035902)
chr7 (29-108)||(39138462-39138541)
chr7 (29-110)||(27093373-27093454)
chr7 (29-110)||(27184847-27184928)
chr7 (32-80)||(640134-640182)
chr7 (31-130)||(5409771-5409875)
chr7 (31-91)||(15680829-15680889)
chr7 (35-130)||(33994236-33994331)
chr7 (29-80)||(22868060-22868111)
chr7 (29-90)||(20549809-20549870)
chr7 (29-129)||(22484043-22484143)
chr7 (29-69)||(5548694-5548734)
chr7 (29-69)||(22602711-22602751)
chr7 (29-85)||(23191914-23191969)
chr7 (31-111)||(26733324-26733404)
chr7 (29-69)||(32308138-32308178)
chr7 (29-80)||(9482952-9483003)
chr7 (29-68)||(17851449-17851488)
chr7 (65-131)||(32093953-32094020)
chr7 (31-130)||(42720830-42720929)
chr7 (31-69)||(18013075-18013113)
chr7 (65-130)||(43027404-43027469)
[»] scaffold0050 (1 HSPs)
scaffold0050 (31-127)||(70298-70394)
[»] scaffold0652 (1 HSPs)
scaffold0652 (31-129)||(403-501)
[»] scaffold0022 (1 HSPs)
scaffold0022 (29-131)||(90861-90963)
[»] scaffold0306 (1 HSPs)
scaffold0306 (29-128)||(13418-13523)
[»] scaffold0152 (1 HSPs)
scaffold0152 (29-128)||(21804-21909)
[»] scaffold0083 (1 HSPs)
scaffold0083 (37-91)||(45509-45563)
[»] scaffold0003 (1 HSPs)
scaffold0003 (65-130)||(241659-241724)
[»] scaffold0171 (1 HSPs)
scaffold0171 (31-69)||(23531-23569)
[»] scaffold0123 (1 HSPs)
scaffold0123 (29-63)||(44532-44566)
[»] scaffold0049 (1 HSPs)
scaffold0049 (29-75)||(63791-63837)
[»] scaffold0279 (1 HSPs)
scaffold0279 (29-85)||(17788-17844)
[»] scaffold0036 (1 HSPs)
scaffold0036 (29-69)||(9748-9788)
[»] scaffold0020 (1 HSPs)
scaffold0020 (29-69)||(135313-135353)
[»] scaffold0008 (1 HSPs)
scaffold0008 (29-69)||(263373-263413)


Alignment Details
Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 29 - 130
Target Start/End: Complemental strand, 20242768 - 20242667
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcat 128  Q
    ||||||||||||||||||||| ||||||||||||| ||||| ||||| |||||||||||||||||| |||| ||||||||||  |||||  |||||||||    
T  20242768 agaaaatcacataattcagtgtaattatatgtgtcggtgtcggacacaacacgtgtctgacacgaggacacgccttatccgaagagtgtctgtgcttcat 20242669  T
Q  129 ag 130  Q
    ||    
T  20242668 ag 20242667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 34 - 129
Target Start/End: Original strand, 28596492 - 28596587
Alignment:
Q  34 atcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcata 129  Q
    ||||||||| |||||| ||||||| ||||| ||||| ||||||||||||||| |||||  | |||||||| ||||||| ||||| |||||||||||    
T  28596492 atcacataagtcagtgtaattataagtgtcggtgtcggacacgacacgtgtccgacactcggacactcctaatccgaggagtgtccgtgcttcata 28596587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 29 - 130
Target Start/End: Original strand, 24009314 - 24009414
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcat 128  Q
    ||||||||||| ||| ||||| || | |||||||| ||||| |||||||||||||||||||||| | |||| |||||||| || ||||| ||||||||||    
T  24009314 agaaaatcacaaaatgcagtgtaaat-tatgtgtcggtgtcggacacgacacgtgtctgacacggggacacgccttatccaaggagtgtccgtgcttcat 24009412  T
Q  129 ag 130  Q
    ||    
T  24009413 ag 24009414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 128
Target Start/End: Complemental strand, 2438758 - 2438661
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcat 128  Q
    ||||||||||||||||||| ||||| | ||||| ||||| |||||||||| |||| |||||  | |||| ||| ||||||| ||||| ||||||||||    
T  2438758 aaaatcacataattcagtgtaattacaagtgtcggtgtcggacacgacacatgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcat 2438661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 131
Target Start/End: Complemental strand, 18841052 - 18840952
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 130  Q
    ||||| |||||||| |||| ||||| | ||||| |||||||||||||||| |||| |||||  | |||| ||| ||||||| ||||| ||||||||||||    
T  18841052 aaaattacataattaagtgtaattacaagtgtcggtgtcagacacgacacatgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcatag 18840953  T
Q  131 t 131  Q
    |    
T  18840952 t 18840952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 130
Target Start/End: Complemental strand, 34994015 - 34993922
Alignment:
Q  37 acataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 130  Q
    |||||||||| || |||||||||||||||||||  |||||||| ||||| |||||  | |||| ||| || | || ||||||||||||||||||    
T  34994015 acataattcaatgtaattatatgtgtcagtgtcgaacacgacatgtgtccgacactgggacacgcctaattcaaggagtgttcgtgcttcatag 34993922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 80
Target Start/End: Original strand, 5367213 - 5367261
Alignment:
Q  32 aaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacac 80  Q
    |||||||||||||||||| ||||||||||||| ||||| ||||||||||    
T  5367213 aaatcacataattcagtgtaattatatgtgtcggtgtcggacacgacac 5367261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 130
Target Start/End: Complemental strand, 30404889 - 30404790
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 130  Q
    ||||||||||||||||||| ||||| | ||||| | ||| |||||||||| |||| ||||| || |||  ||| ||| |||||| ||| |||||||||||    
T  30404889 aaaatcacataattcagtgtaattacaagtgtcggcgtcggacacgacacatgtccgacaccaggacatgcctaatctgagaagcgtttgtgcttcatag 30404790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 31808097 - 31808134
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgt 68  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  31808097 aaaatcacataattcagtgtaattatatgtgtcagtgt 31808134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 76
Target Start/End: Complemental strand, 20922969 - 20922922
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacg 76  Q
    |||||||||||||||| |||| ||||||||||||| ||||| ||||||    
T  20922969 agaaaatcacataatttagtgtaattatatgtgtctgtgtcggacacg 20922922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 130
Target Start/End: Original strand, 35056927 - 35056998
Alignment:
Q  59 gtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 130  Q
    ||||| ||||| ||||||||||||||| ||||||  ||||| ||| ||| ||| ||||| ||||||||||||    
T  35056927 gtgtcggtgtcggacacgacacgtgtccgacacggaaacacgcctaatctgaggagtgtccgtgcttcatag 35056998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 130
Target Start/End: Original strand, 37558997 - 37559096
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 130  Q
    |||||||||||||||| || ||||| | ||||| ||||| |||  |||||||||| |||||  | |||| | | ||||||| ||||| ||||||||||||    
T  37558997 aaaatcacataattcaatgtaattacaagtgtcggtgtcggacttgacacgtgtccgacaccggtacacgcttaatccgaggagtgtccgtgcttcatag 37559096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 86
Target Start/End: Complemental strand, 40361793 - 40361738
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtct 86  Q
    ||||| |||||||| |||| |||||||| |||  ||||||||||||||||||||||    
T  40361793 aaaattacataatttagtgtaattatatctgttggtgtcagacacgacacgtgtct 40361738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 91
Target Start/End: Complemental strand, 37411285 - 37411223
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacac 91  Q
    |||||||||||||||||||||  ||||||||||||  ||||  ||||||| |||||| |||||    
T  37411285 agaaaatcacataattcagtgtgattatatgtgtcgatgtcgaacacgacgcgtgtccgacac 37411223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 130
Target Start/End: Complemental strand, 10535734 - 10535685
Alignment:
Q  81 gtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 130  Q
    ||||||||||| || |||| ||| ||||||| ||||||||||||||||||    
T  10535734 gtgtctgacaccaggacacgcctaatccgaggagtgttcgtgcttcatag 10535685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 17776605 - 17776646
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtca 70  Q
    |||||| ||||||| |||||| ||||||||||||||||||||    
T  17776605 agaaaaccacataagtcagtgtaattatatgtgtcagtgtca 17776646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 62
Target Start/End: Original strand, 21616780 - 21616813
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgt 62  Q
    ||||||||||||||||||||| ||||||||||||    
T  21616780 agaaaatcacataattcagtgtaattatatgtgt 21616813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 34691844 - 34691799
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtcagacacg 76  Q
    ||||||| ||||||||||| ||||||||||||| ||||| ||||||    
T  34691844 aaaatcatataattcagtgtaattatatgtgtcggtgtcggacacg 34691799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 34714256 - 34714211
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtcagacacg 76  Q
    ||||||| ||||||||||| ||||||||||||| ||||| ||||||    
T  34714256 aaaatcatataattcagtgtaattatatgtgtcggtgtcggacacg 34714211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 131
Target Start/End: Complemental strand, 36096368 - 36096303
Alignment:
Q  66 tgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatagt 131  Q
    |||| |||||||||||||||||||||| | |||| ||||| || |  ||||| |||||||||||||    
T  36096368 tgtcggacacgacacgtgtctgacacggggacacgccttaaccaaagagtgtccgtgcttcatagt 36096303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 38355928 - 38355887
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtca 70  Q
    |||||||||||||||||||||  |||||||||||| ||||||    
T  38355928 agaaaatcacataattcagtgtgattatatgtgtcggtgtca 38355887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 15909673 - 15909633
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtc 69  Q
    ||||||| ||||||||||||| ||||||||||| |||||||    
T  15909673 agaaaattacataattcagtgtaattatatgtgacagtgtc 15909633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 139
Target Start/End: Original strand, 15972893 - 15973001
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 130  Q
    ||||| ||| ||||||||| ||||| | ||||| ||||| ||||||||||||||| ||| |  | |||| ||| ||||||  | ||| ||||||||||||    
T  15972893 aaaattacacaattcagtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacgccgggacacacctaatccgaagaatgtccgtgcttcatag 15972992  T
Q  131 tgtccaact 139  Q
     || |||||    
T  15972993 ggtgcaact 15973001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 130
Target Start/End: Complemental strand, 18054772 - 18054716
Alignment:
Q  74 acgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 130  Q
    |||||||||||||||||||  ||||| |||||||| || | ||| ||||||||||||    
T  18054772 acgacacgtgtctgacacggaaacacgccttatccaaggaatgtccgtgcttcatag 18054716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 18889632 - 18889592
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtc 69  Q
    ||||||||||||||||||||| ||| ||||||||| |||||    
T  18889632 agaaaatcacataattcagtgtaatcatatgtgtcggtgtc 18889592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 32749866 - 32749826
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtc 69  Q
    ||||||||||||||||||||| ||| ||| |||||||||||    
T  32749866 agaaaatcacataattcagtgtaataataagtgtcagtgtc 32749826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 34785023 - 34784983
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtc 69  Q
    |||||||||||||||| |||| ||||||||||||| |||||    
T  34785023 agaaaatcacataatttagtgtaattatatgtgtcggtgtc 34784983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 35449531 - 35449567
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcag 65  Q
    ||||||||||| ||||||||| |||||||||||||||    
T  35449531 agaaaatcacagaattcagtgtaattatatgtgtcag 35449567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 131
Target Start/End: Complemental strand, 38117198 - 38117098
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 130  Q
    ||||||||||| ||| ||| ||||| | ||||  ||||| ||||| ||||||||| |||||  | |||| ||| |||||||  |||| ||||||||||||    
T  38117198 aaaatcacatacttcggtgtaattacaagtgttggtgtcggacacaacacgtgtccgacaccgggacacgcctaatccgaggggtgtccgtgcttcatag 38117099  T
Q  131 t 131  Q
    |    
T  38117098 t 38117098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 44860338 - 44860378
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtc 69  Q
    |||||||| |||||||||||| ||||||||||||| |||||    
T  44860338 agaaaatcgcataattcagtgtaattatatgtgtcggtgtc 44860378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 29 - 131
Target Start/End: Original strand, 35222956 - 35223058
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcat 128  Q
    |||||||||||||||||| || ||||||||||||| ||||| |||| ||||||||||||||||| | |||| | ||||||||| ||||| ||||||||||    
T  35222956 agaaaatcacataattcaatgtaattatatgtgtcggtgtcggacatgacacgtgtctgacacggggacacgctttatccgaggagtgtccgtgcttcat 35223055  T
Q  129 agt 131  Q
    |||    
T  35223056 agt 35223058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 29 - 130
Target Start/End: Complemental strand, 13845566 - 13845465
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcat 128  Q
    ||||||||||| ||| ||||| ||||||||||||| ||||| ||||||| ||||||||||||||   |||| |||||||| || ||||| ||||||||||    
T  13845566 agaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcggacacgagacgtgtctgacacggagacacgccttatccaaggagtgtccgtgcttcat 13845467  T
Q  129 ag 130  Q
    ||    
T  13845466 ag 13845465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 31 - 130
Target Start/End: Complemental strand, 40993374 - 40993275
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 130  Q
    ||||||||||||||||||| ||||||||||||| ||||| |||||||||| |||| |||||  | |||| ||| ||||||| ||||| | ||||||||||    
T  40993374 aaaatcacataattcagtgtaattatatgtgtcggtgtcggacacgacacatgtccgacaccgggacacgcctaatccgaggagtgtccatgcttcatag 40993275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 29 - 90
Target Start/End: Original strand, 2941576 - 2941637
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgaca 90  Q
    ||||||||||| ||| ||||| ||||||||||||| ||||| ||||||||||||||||||||    
T  2941576 agaaaatcacaaaatacagtgtaattatatgtgtcggtgtcggacacgacacgtgtctgaca 2941637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 123
Target Start/End: Original strand, 3631708 - 3631796
Alignment:
Q  35 tcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgc 123  Q
    ||||||||||||||| ||||||||||| ||||||| |||||||||| |||| ||||| || |||| |||  |||||| ||||| |||||    
T  3631708 tcacataattcagtgtaattatatgtgccagtgtcggacacgacacatgtccgacaccaggacacgcctagtccgaggagtgtccgtgc 3631796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 130
Target Start/End: Original strand, 55401095 - 55401194
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgaca-cgagaacactccttatccgagaagtgttcgtgcttcata 129  Q
    |||||||||||||| |||| ||||| | ||||| ||||| ||||||||||||||| |||| |||| |||| ||| ||||||| ||||| |||||||||||    
T  55401095 aaaatcacataatttagtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgag-acacgcctaatccgaggagtgtccgtgcttcata 55401193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 31 - 130
Target Start/End: Original strand, 20503485 - 20503584
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 130  Q
    ||||| ||||||||||||| ||||| | ||||| ||||  |||||||||| ||||||||||  | |||| ||| ||||||| ||||| ||||||||||||    
T  20503485 aaaatgacataattcagtgtaattacaagtgtcggtgttggacacgacacatgtctgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 20503584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 130
Target Start/End: Original strand, 11251996 - 11252095
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcat 128  Q
    ||||||||||||||||||||| |||  |||||||| ||||||||||| ||||||||| | ||   |||||| ||| ||||||| |||||  |||||||||    
T  11251996 agaaaatcacataattcagtgtaat--tatgtgtcggtgtcagacacaacacgtgtccggcatcggaacacgcctaatccgaggagtgtctgtgcttcat 11252093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 129
Target Start/End: Complemental strand, 8789591 - 8789489
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacg--tgtctgacac-gagaacactccttatccgagaagtgttcgtgctt 125  Q
    ||||||||||||||||| ||| ||||||||||||| ||||| ||||||||||   |||| ||||| |||| ||| ||| ||||||| ||||| |||||||    
T  8789591 agaaaatcacataattccgtgtaattatatgtgtcggtgtcggacacgacacacatgtcggacaccgaga-cacgcctaatccgaggagtgtccgtgctt 8789493  T
Q  126 cata 129  Q
    ||||    
T  8789492 cata 8789489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 33 - 128
Target Start/End: Original strand, 25775531 - 25775624
Alignment:
Q  33 aatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcat 128  Q
    ||||||||||||||||| ||||| | ||||| ||||| |||||| |  ||||| ||||| || |||| ||| ||||||| ||||||||||||||||    
T  25775531 aatcacataattcagtgtaattacaagtgtcggtgtcggacacgtc--gtgtccgacaccaggacacgcctaatccgaggagtgttcgtgcttcat 25775624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 76
Target Start/End: Complemental strand, 49505195 - 49505148
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacg 76  Q
    |||||||||||||||| |||| ||||||||||||||||||| ||||||    
T  49505195 agaaaatcacataatttagtgtaattatatgtgtcagtgtcggacacg 49505148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 91
Target Start/End: Original strand, 25093520 - 25093582
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacac 91  Q
    ||||||||||| ||||||||| ||||||||||||| ||||| ||||| |||| |||| |||||    
T  25093520 agaaaatcacacaattcagtgtaattatatgtgtcggtgtcggacacaacacatgtccgacac 25093582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 76
Target Start/End: Original strand, 7928470 - 7928515
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtcagacacg 76  Q
    ||||||||||||||||||| ||||||||||||| ||||| ||||||    
T  7928470 aaaatcacataattcagtgtaattatatgtgtcggtgtcggacacg 7928515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 10954972 - 10955032
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacac 91  Q
    ||||||||||||||||||| ||| | | ||||| ||||| ||||||||||||||| |||||    
T  10954972 aaaatcacataattcagtgtaatcacaagtgtcggtgtcggacacgacacgtgtccgacac 10955032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 130
Target Start/End: Original strand, 18426969 - 18427068
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 130  Q
    ||||||||||||||| ||| |||||||| |||| ||||| || |||||||||||| | |||  | |||| ||| ||| ||| ||||| |||| |||||||    
T  18426969 aaaatcacataattcggtgtaattatatatgtcggtgtcggatacgacacgtgtccggcaccgggacacacctaatctgaggagtgtccgtgtttcatag 18427068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 130
Target Start/End: Complemental strand, 41961638 - 41961579
Alignment:
Q  71 gacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 130  Q
    ||||||||||||||| |||||  | |||| ||| ||||||||||||| ||||||||||||    
T  41961638 gacacgacacgtgtccgacactgggacacgcctaatccgagaagtgtccgtgcttcatag 41961579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 80
Target Start/End: Original strand, 8842348 - 8842398
Alignment:
Q  30 gaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacac 80  Q
    |||||||||||||||  ||| |||||||| |||| ||||||||||||||||    
T  8842348 gaaaatcacataatttggtgtaattatatatgtcggtgtcagacacgacac 8842398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 129
Target Start/End: Original strand, 14216951 - 14217021
Alignment:
Q  59 gtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcata 129  Q
    |||| |||||| ||||||||||||||  |||||  | |||| ||| ||||||||||||| |||||||||||    
T  14216951 gtgttagtgtcggacacgacacgtgtacgacactgggacacacctaatccgagaagtgtccgtgcttcata 14217021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 129
Target Start/End: Original strand, 14223080 - 14223150
Alignment:
Q  59 gtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcata 129  Q
    |||| |||||| ||||||||||||||  |||||  | |||| ||| ||||||||||||| |||||||||||    
T  14223080 gtgttagtgtcggacacgacacgtgtacgacactgggacacacctaatccgagaagtgtccgtgcttcata 14223150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 131
Target Start/End: Complemental strand, 17005613 - 17005547
Alignment:
Q  65 gtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatagt 131  Q
    ||||||||||  ||||||||||||||| || ||||  || ||||||| |||||| ||||||||||||    
T  17005613 gtgtcagacataacacgtgtctgacaccaggacacctctaatccgaggagtgtttgtgcttcatagt 17005547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 20691337 - 20691383
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacac 75  Q
    ||||||| ||||||||||||| ||| ||||||||| |||||||||||    
T  20691337 agaaaatgacataattcagtgtaatcatatgtgtcggtgtcagacac 20691383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 131
Target Start/End: Original strand, 25064972 - 25065038
Alignment:
Q  65 gtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatagt 131  Q
    ||||| |||||||||||||||||||||  | ||||   ||||||||| |||||||||||| ||||||    
T  25064972 gtgtcggacacgacacgtgtctgacaccgggacacggtttatccgaggagtgttcgtgctccatagt 25065038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 91
Target Start/End: Original strand, 45451571 - 45451633
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacac 91  Q
    ||||||||||||| ||||||  ||| ||||||||| ||||| |||||||||| |||| |||||    
T  45451571 agaaaatcacatacttcagtataataatatgtgtcggtgtcggacacgacacatgtccgacac 45451633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 13620805 - 13620764
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtca 70  Q
    |||||||||||| |||||||||| ||||||||||| ||||||    
T  13620805 agaaaatcacatgattcagtgcagttatatgtgtctgtgtca 13620764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 6780460 - 6780404
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtc 85  Q
    |||||||||| || ||||||| ||||||||||||  ||||| ||||| |||||||||    
T  6780460 agaaaatcacgtagttcagtgtaattatatgtgttggtgtcggacacaacacgtgtc 6780404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 75
Target Start/End: Complemental strand, 10268525 - 10268481
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtcagacac 75  Q
    |||||||||||||| |||| ||||| | |||||||||||||||||    
T  10268525 aaaatcacataatttagtgtaattacaagtgtcagtgtcagacac 10268481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 11313841 - 11313801
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtc 69  Q
    |||||||||||||||| |||| |||||||||||| ||||||    
T  11313841 agaaaatcacataatttagtgtaattatatgtgttagtgtc 11313801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 91
Target Start/End: Complemental strand, 16192729 - 16192701
Alignment:
Q  63 cagtgtcagacacgacacgtgtctgacac 91  Q
    |||||||||||||||||||||||||||||    
T  16192729 cagtgtcagacacgacacgtgtctgacac 16192701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 20389636 - 20389694
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacac 91  Q
    ||||||||||||||||||| || |||||| ||| ||||| ||||| |||||||||||||||    
T  20389636 aaaatcacataattcagtgtaa-tatatgcgtcggtgtcggacac-acacgtgtctgacac 20389694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 24633440 - 24633380
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacac 91  Q
    |||||||| ||||||| || ||||||||||||| ||||  |||||||||| ||||| ||||    
T  24633440 aaaatcacgtaattcaatgtaattatatgtgtcggtgttggacacgacacttgtctaacac 24633380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 128
Target Start/End: Original strand, 28918021 - 28918120
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtc--agacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcat 128  Q
    ||||||||||||||||||| ||||| | ||||| |||||   ||||||||||||||| |||||  | |||| ||| |||| || ||||| | ||||||||    
T  28918021 aaaatcacataattcagtgtaattacaagtgtcggtgtcgtggacacgacacgtgtccgacactgggacacgcctaatccaaggagtgtccctgcttcat 28918120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 57
Target Start/End: Complemental strand, 32429421 - 32429393
Alignment:
Q  29 agaaaatcacataattcagtgcaattata 57  Q
    |||||||||||||||||||||||||||||    
T  32429421 agaaaatcacataattcagtgcaattata 32429393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 29 - 130
Target Start/End: Original strand, 35161054 - 35161155
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcat 128  Q
    ||||||||||||||||||||| ||||||| || |||| ||| ||||||||||||||| |||||  |||||| ||| |||||| |||||| ||||||||||    
T  35161054 agaaaatcacataattcagtgtaattataagtatcagagtcggacacgacacgtgtccgacaccggaacacacctaatccgaaaagtgtccgtgcttcat 35161153  T
Q  129 ag 130  Q
    ||    
T  35161154 ag 35161155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 31 - 132
Target Start/End: Complemental strand, 23293025 - 23292924
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 130  Q
    ||||||||||||||||||  ||||| | ||||| ||||| ||||||||||||||| |||||  | |||| ||| ||||||| ||||| ||||||||||||    
T  23293025 aaaatcacataattcagtataattacaagtgtcggtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 23292926  T
Q  131 tg 132  Q
    ||    
T  23292925 tg 23292924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 31 - 131
Target Start/End: Complemental strand, 35158024 - 35157924
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 130  Q
    |||||||||||||| |||| ||||||| ||||| ||||| |||||||||| ||||  ||||  |||||| | | ||||||||||||| ||||||||||||    
T  35158024 aaaatcacataatttagtgtaattataagtgtcggtgtctgacacgacacatgtccaacaccggaacacgcttaatccgagaagtgtccgtgcttcatag 35157925  T
Q  131 t 131  Q
    |    
T  35157924 t 35157924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 91
Target Start/End: Complemental strand, 8402783 - 8402721
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacac 91  Q
    ||||||||| ||||||||||| |||||||||| ||||||||||||||||||| |||| |||||    
T  8402783 agaaaatcatataattcagtgtaattatatgtctcagtgtcagacacgacacttgtccgacac 8402721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 131
Target Start/End: Complemental strand, 5414172 - 5414100
Alignment:
Q  59 gtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatagt 131  Q
    ||||||||||| |||||||||||||||||||||  | |||| |||||||| || ||||| |||||||||||||    
T  5414172 gtgtcagtgtcggacacgacacgtgtctgacacagggacacaccttatccaaggagtgtccgtgcttcatagt 5414100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 131
Target Start/End: Complemental strand, 40179675 - 40179575
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 130  Q
    ||||||||||||||||||| ||||||||| ||| ||||| |||||||||| |||  ||||| |  |||| ||| ||||||||| | ||||||||| ||||    
T  40179675 aaaatcacataattcagtgtaattatatgcgtcggtgtcggacacgacacatgttcgacaccatgacacgcctaatccgagaattattcgtgcttgatag 40179576  T
Q  131 t 131  Q
    |    
T  40179575 t 40179575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 29 - 132
Target Start/End: Complemental strand, 8423759 - 8423656
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcat 128  Q
    ||||||||||||||||||||| |||||||  |||| ||||| |||||||||  |||| |||||  | |||| ||| ||| ||||||||| ||||| ||||    
T  8423759 agaaaatcacataattcagtgtaattataaatgtcggtgtcggacacgacagctgtccgacaccgggacacgcctaatcggagaagtgtccgtgcgtcat 8423660  T
Q  129 agtg 132  Q
    ||||    
T  8423659 agtg 8423656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 59 - 130
Target Start/End: Complemental strand, 22234890 - 22234819
Alignment:
Q  59 gtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 130  Q
    ||||| ||||| ||||||||||||||| ||||| || ||||  || ||||||||||||||||||||||||||    
T  22234890 gtgtcggtgtctgacacgacacgtgtccgacaccaggacacagctaatccgagaagtgttcgtgcttcatag 22234819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 31 - 130
Target Start/End: Original strand, 49431046 - 49431145
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 130  Q
    ||||||||||||||||||| ||||| | ||||| ||||| |||||||||||||||  ||||  | |||| ||||||||||| ||||| | ||||| ||||    
T  49431046 aaaatcacataattcagtgtaattaaaagtgtcggtgtcggacacgacacgtgtccaacaccgggacacgccttatccgaggagtgtccatgctttatag 49431145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 85
Target Start/End: Complemental strand, 54580062 - 54580008
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtc 85  Q
    ||||||||||||||||||| ||||||| ||||| ||||| |||||||||||||||    
T  54580062 aaaatcacataattcagtgtaattataagtgtcggtgtcggacacgacacgtgtc 54580008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 31 - 131
Target Start/End: Complemental strand, 28964287 - 28964187
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 130  Q
    ||||||||||||||||||| ||||| | ||||| ||||| |||||||||| | || |||||  | |||| ||| ||||||| ||||| | ||||||||||    
T  28964287 aaaatcacataattcagtgtaattacaagtgtctgtgtcggacacgacacatatccgacactgggacacgcctaatccgaggagtgtccatgcttcatag 28964188  T
Q  131 t 131  Q
    |    
T  28964187 t 28964187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 130
Target Start/End: Original strand, 36635342 - 36635449
Alignment:
Q  29 agaaaatcacataattcagtgcaattatat------gtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtg 122  Q
    ||||||||||||||||||||| ||||||||      |||| |||||||||||||||||| ||| |||||  | |||| ||| ||||||  ||||| ||||    
T  36635342 agaaaatcacataattcagtgtaattatatgtgttcgtgtgagtgtcagacacgacacgcgtcagacaccgggacacgcctaatccgaagagtgtccgtg 36635441  T
Q  123 cttcatag 130  Q
    ||||||||    
T  36635442 cttcatag 36635449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 129
Target Start/End: Complemental strand, 3947805 - 3947702
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtca-----gacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgctt 125  Q
    |||||| |||||||||||| ||||| | |||||||||||      ||||||||||||||| ||||| || |||| ||| ||||||| ||||| |||||||    
T  3947805 aaaatcgcataattcagtgtaattacaagtgtcagtgtcgtgtcggacacgacacgtgtccgacaccaggacacacctaatccgaggagtgtccgtgctt 3947706  T
Q  126 cata 129  Q
    ||||    
T  3947705 cata 3947702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 112
Target Start/End: Original strand, 9996858 - 9996941
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgaga 112  Q
    ||||||||||||||||||||  |||||||||| || ||||||||||  ||||||||| |||||  |||||| ||| ||| ||||    
T  9996858 agaaaatcacataattcagtataattatatgtctcggtgtcagacataacacgtgtccgacactggaacacacctaatcggaga 9996941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 10499311 - 10499260
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacac 80  Q
    |||||||||||||||| |||| ||||||||||||||||||| ||| ||||||    
T  10499311 agaaaatcacataatttagtgtaattatatgtgtcagtgtcggacccgacac 10499260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 130
Target Start/End: Complemental strand, 12895313 - 12895214
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 130  Q
    ||||||||||||||  ||| ||||||| ||||| ||||| ||||||||| || || ||||   | |||| ||| ||||||| ||||||||||||||||||    
T  12895313 aaaatcacataattttgtgtaattataagtgtcggtgtcggacacgacatgtatccgacatcgggacacgcctaatccgaggagtgttcgtgcttcatag 12895214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 130
Target Start/End: Complemental strand, 36509131 - 36509032
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 130  Q
    |||||||||||||  |||| ||||||||||||| | ||| ||| |||||||||||||| || || ||||   | ||||||||||| ||| ||||||||||    
T  36509131 aaaatcacataatcaagtgtaattatatgtgtcggcgtcggacgcgacacgtgtctgataccaggacacgtttaatccgagaagtattcatgcttcatag 36509032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 59 - 129
Target Start/End: Original strand, 12323968 - 12324038
Alignment:
Q  59 gtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcata 129  Q
    ||||| ||||| |||| ||||||||| || |||| |||||| ||||||||||| ||||| |||||||||||    
T  12323968 gtgtcggtgtcggacatgacacgtgtgtggcacgggaacacaccttatccgaggagtgtccgtgcttcata 12324038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 60 - 130
Target Start/End: Complemental strand, 24613700 - 24613630
Alignment:
Q  60 tgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 130  Q
    |||| ||||||||||||||||||||||||||| || ||||  || |||| || ||||| ||||||||||||    
T  24613700 tgtcggtgtcagacacgacacgtgtctgacaccaggacacgtctaatcctaggagtgtccgtgcttcatag 24613630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 4157169 - 4157229
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacac 91  Q
    |||||||||||||| |||||||||| | ||||| ||||| |||||||||| |||| |||||    
T  4157169 aaaatcacataatttagtgcaattacaagtgtcggtgtcggacacgacacatgtccgacac 4157229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 4157456 - 4157516
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacac 91  Q
    |||||||||||||| |||||||||| | ||||| ||||| |||||||||| |||| |||||    
T  4157456 aaaatcacataatttagtgcaattacaagtgtcggtgtcggacacgacacatgtccgacac 4157516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 12797377 - 12797317
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacac 91  Q
    ||||||||||||||||||| ||||| | ||||| ||||| ||||||| || ||||||||||    
T  12797377 aaaatcacataattcagtgtaattacaagtgtcggtgtcggacacgatacatgtctgacac 12797317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 19097935 - 19097859
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactcctta 105  Q
    |||||||||| |||||||||  |||||||| |||| |||||  ||| ||||||||||||||||| | |||| |||||    
T  19097935 agaaaatcacgtaattcagtataattatatttgtcggtgtcgaacatgacacgtgtctgacacggggacacgcctta 19097859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 130
Target Start/End: Original strand, 16073414 - 16073513
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 130  Q
    |||||| |||||||||||| ||||| | ||||| ||||| ||||||| || |||| ||||| |  |||| ||| ||||||| ||||| | ||||||||||    
T  16073414 aaaatcgcataattcagtgtaattacaagtgtcggtgtcggacacgatacatgtccgacactaagacacgcctaatccgaggagtgtccatgcttcatag 16073513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 130
Target Start/End: Original strand, 19482739 - 19482798
Alignment:
Q  71 gacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 130  Q
    ||||||||||||||| |||||  | |||| ||| ||||||| ||||||||||||||||||    
T  19482739 gacacgacacgtgtccgacactgggacacacctaatccgaggagtgttcgtgcttcatag 19482798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 98
Target Start/End: Complemental strand, 38847051 - 38846984
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaaca 98  Q
    ||||||| || |||||||| ||||| | ||||||||||| || |||||||||||| ||||| ||||||    
T  38847051 aaaatcatattattcagtgtaattacaagtgtcagtgtcggatacgacacgtgtccgacaccagaaca 38846984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 131
Target Start/End: Complemental strand, 30103397 - 30103296
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcat 128  Q
    |||||||||||||||| |||| ||| ||||||||| |||||| ||||||||  |||||||||  || ||||  || ||||||| |||||   ||||||||    
T  30103397 agaaaatcacataatt-agtgtaatcatatgtgtcggtgtcaaacacgacatatgtctgacatcaggacacatctaatccgaggagtgtctctgcttcat 30103299  T
Q  129 agt 131  Q
    |||    
T  30103298 agt 30103296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 63
Target Start/End: Original strand, 40613468 - 40613502
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtc 63  Q
    ||||||||||||||||||||| |||||||||||||    
T  40613468 agaaaatcacataattcagtgtaattatatgtgtc 40613502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 133
Target Start/End: Complemental strand, 46083991 - 46083917
Alignment:
Q  59 gtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatagtgt 133  Q
    |||||||| || ||||||||||||||||||| || | |||| ||||||  ||| ||||| | |||||||||||||    
T  46083991 gtgtcagtatcggacacgacacgtgtctgacgcggggacacgccttataagaggagtgtccatgcttcatagtgt 46083917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 66
Target Start/End: Original strand, 903940 - 903977
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagt 66  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  903940 agaaaatcacataattcagtgtaattatatgtatcagt 903977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 5775399 - 5775358
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtca 70  Q
    |||||||||||||||| |||| ||||||||||||| ||||||    
T  5775399 agaaaatcacataattaagtgtaattatatgtgtcggtgtca 5775358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 2362014 - 2361954
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacac 91  Q
    ||||| |||||||| |||| ||||| | ||||| ||||| |||||||| ||||||||||||    
T  2362014 aaaattacataatttagtgtaattaaaagtgtcggtgtcggacacgactcgtgtctgacac 2361954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 77
Target Start/End: Complemental strand, 20950456 - 20950420
Alignment:
Q  41 aattcagtgcaattatatgtgtcagtgtcagacacga 77  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  20950456 aattcagtgtaattatatgtgtcggtgtcagacacga 20950420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 61
Target Start/End: Complemental strand, 22440641 - 22440609
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtg 61  Q
    ||||||||||||||||||||| |||||||||||    
T  22440641 agaaaatcacataattcagtgtaattatatgtg 22440609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 29205464 - 29205524
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacac 91  Q
    ||||||||||||||||||| ||||| | ||||| ||||  |||||||||| |||| |||||    
T  29205464 aaaatcacataattcagtgtaattacaagtgtcggtgttggacacgacacatgtccgacac 29205524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 130
Target Start/End: Complemental strand, 34306843 - 34306744
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgaca-cgagaacactccttatccgagaagtgttcgtgcttcata 129  Q
    ||||||| |||||  |||| ||||| | ||||| ||||| ||||||||||||||| |||| |||| |||| ||| ||| ||| | |||||||||||||||    
T  34306843 aaaatcagataatgtagtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgag-acacgcctaatctgaggaatgttcgtgcttcata 34306745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 43)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 33 - 129
Target Start/End: Original strand, 12918967 - 12919063
Alignment:
Q  33 aatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcata 129  Q
    |||||||||||||| ||  |||||||||||  || || |||||||||||||||||||||| | ||||  ||||||||||||||||||||||||||||    
T  12918967 aatcacataattcaatgtgattatatgtgttggtatcggacacgacacgtgtctgacacggggacacggcttatccgagaagtgttcgtgcttcata 12919063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 40259002 - 40258874
Alignment:
Q  1 cacggacatcgacacaattaannnnnnnagaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacact 100  Q
    |||||||| ||||||||||||       | ||||||||||||||||||| ||||| | ||||| |||||||||||||||| |||| ||||| || ||||     
T  40259002 cacggacaccgacacaattaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcagacacgacacctgtccgacaccaggacacg 40258903  T
Q  101 ccttatccgagaagtgttcgtgcttcata 129  Q
    ||| ||||||| ||||| | |||||||||    
T  40258902 cctaatccgaggagtgtccatgcttcata 40258874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 30 - 128
Target Start/End: Complemental strand, 29163421 - 29163323
Alignment:
Q  30 gaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcat 128  Q
    ||||||||||||||||| |  ||||||||||||| ||||| ||||||||||||| |||||||  | ||||  || ||| ||||||||||||||||||||    
T  29163421 gaaaatcacataattcaatttaattatatgtgtcggtgtcggacacgacacgtgcctgacaccgggacacggctaatcagagaagtgttcgtgcttcat 29163323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 29 - 130
Target Start/End: Original strand, 30749858 - 30749959
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcat 128  Q
    ||||||||||||||||||||| ||||||||||||| ||||| ||||| ||| |||| ||||||||| | || | |||| |||| ||||| | ||||||||    
T  30749858 agaaaatcacataattcagtgtaattatatgtgtcggtgtcggacaccacatgtgtttgacacgaggatacgcattattcgaggagtgtccatgcttcat 30749957  T
Q  129 ag 130  Q
    ||    
T  30749958 ag 30749959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 29 - 130
Target Start/End: Original strand, 30771309 - 30771410
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcat 128  Q
    ||||||||||||||||||||| ||||||||||||| ||||| ||||| ||| |||| ||||||||| | || | |||| |||| ||||| | ||||||||    
T  30771309 agaaaatcacataattcagtgtaattatatgtgtcggtgtcggacaccacatgtgtttgacacgaggatacgcattattcgaggagtgtccatgcttcat 30771408  T
Q  129 ag 130  Q
    ||    
T  30771409 ag 30771410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 29 - 129
Target Start/End: Complemental strand, 10577776 - 10577676
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcat 128  Q
    ||||||||||| ||| ||||| ||||||||||||| | | | |||||||| ||||||||||||| | |||| |||||||| || ||||| ||||||||||    
T  10577776 agaaaatcacaaaatgcagtgtaattatatgtgtcgggggcggacacgacgcgtgtctgacacggggacacgccttatccaaggagtgtccgtgcttcat 10577677  T
Q  129 a 129  Q
    |    
T  10577676 a 10577676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 130
Target Start/End: Complemental strand, 5898305 - 5898206
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 130  Q
    ||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||  ||||  | ||||  || ||||||| ||||| ||||||| ||||    
T  5898305 aaaatcacataattcagtgtaattatatgcgtcggtgtcagacacgacacgtgtccaacaccgggacacgtctaatccgaggagtgtccgtgctttatag 5898206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 31 - 130
Target Start/End: Original strand, 18337349 - 18337448
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 130  Q
    ||||||||||||||||||| ||||| | ||||| ||||| ||||| ||||||||| |||||  | |||  ||| ||||||| ||||| ||||||||||||    
T  18337349 aaaatcacataattcagtgtaattacaagtgtcggtgtcggacacaacacgtgtccgacactgggacatgcctgatccgaggagtgtccgtgcttcatag 18337448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 31 - 130
Target Start/End: Original strand, 37598852 - 37598950
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 130  Q
    ||||||||| ||||||||| ||||||| ||||| ||||| ||||||||||||||| ||||   | |||| ||| ||||||| ||||| ||||||||||||    
T  37598852 aaaatcaca-aattcagtgtaattataagtgtcggtgtcggacacgacacgtgtccgacaatgggacacgcctaatccgaggagtgtccgtgcttcatag 37598950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 130
Target Start/End: Complemental strand, 7918252 - 7918154
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtc-agacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttca 127  Q
    ||||||||||||||||||||| |||||||||||||||||||  | ||    |||| |||||||| || |||| ||| ||||||| ||||| |||||||||    
T  7918252 agaaaatcacataattcagtgtaattatatgtgtcagtgtcgtgtca----acgtttctgacaccaggacacacctaatccgaggagtgtccgtgcttca 7918157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 25361904 - 25361944
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtc 69  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  25361904 agaaaatcacataattcagtgtaattatatgtgtcagtgtc 25361944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 58 - 130
Target Start/End: Complemental strand, 32461465 - 32461393
Alignment:
Q  58 tgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 130  Q
    |||||| ||||| |||||||||||||||||||||  | |||| ||| |||| |||||||| ||||||||||||    
T  32461465 tgtgtcggtgtcggacacgacacgtgtctgacactgggacacgcctaatccaagaagtgtccgtgcttcatag 32461393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 36878479 - 36878543
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacga 93  Q
    ||||||||||||||||||||| ||||||| ||||| ||||| ||||||| || |||| |||||||    
T  36878479 agaaaatcacataattcagtgtaattataggtgtcggtgtctgacacgaaacatgtccgacacga 36878543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 85
Target Start/End: Original strand, 40181889 - 40181945
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtc 85  Q
    ||||||||||||||||||||| |||||||||| || ||||| ||||| |||||||||    
T  40181889 agaaaatcacataattcagtgtaattatatgtatcggtgtcggacacaacacgtgtc 40181945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 31 - 130
Target Start/End: Original strand, 51410045 - 51410144
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgaca-cgagaacactccttatccgagaagtgttcgtgcttcata 129  Q
    ||||||||||||||||||| ||||| | ||||| ||||| |||||||||||| || |||| |||| |||| ||| |||| || ||| |||||||||||||    
T  51410045 aaaatcacataattcagtgtaattacaagtgtcggtgtcggacacgacacgtatccgacaccgag-acacgcctaatccaaggagtattcgtgcttcata 51410143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 130
Target Start/End: Original strand, 25934675 - 25934746
Alignment:
Q  59 gtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 130  Q
    ||||| ||||| |||||||||||||||||||||| | | || |||||||| || ||||| ||||||||||||    
T  25934675 gtgtcggtgtcggacacgacacgtgtctgacacggggatacgccttatccaaggagtgtccgtgcttcatag 25934746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 130
Target Start/End: Complemental strand, 38078700 - 38078601
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 130  Q
    |||||||||||||||| || ||||| | ||||| ||||| |||||||||| |||   |||| || |||| ||| ||||||| ||| ||||||||||||||    
T  38078700 aaaatcacataattcaatgtaattacaagtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgaggagtattcgtgcttcatag 38078601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 137
Target Start/End: Complemental strand, 18190147 - 18190041
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 130  Q
    ||||| ||||||||||||| ||||| | |||||  |||||||||| ||||||||| |||||  | |||| ||| ||||||| |||||  | |||||||||    
T  18190147 aaaattacataattcagtgtaattacaagtgtcgatgtcagacacaacacgtgtccgacaccgggacacacctaatccgaggagtgtatgcgcttcatag 18190048  T
Q  131 tgtccaa 137  Q
    || ||||    
T  18190047 tgaccaa 18190041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 130
Target Start/End: Complemental strand, 2896162 - 2896061
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcat 128  Q
    ||||||||||||||||||||| |  ||||| |||| ||||||||||||||| ||||| || ||  | |||| ||| |||| |||||||| | || |||||    
T  2896162 agaaaatcacataattcagtgtagctatatatgtcggtgtcagacacgacatgtgtccgagaccgggacacacctaatccaagaagtgtccatgtttcat 2896063  T
Q  129 ag 130  Q
    ||    
T  2896062 ag 2896061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 131
Target Start/End: Complemental strand, 22515926 - 22515826
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgaca-cgagaacactccttatccgagaagtgttcgtgcttcata 129  Q
    |||||||||||||| |||| ||||| | ||||| ||||| |||||||||| | || |||| |||| |||| ||| ||||||| ||||| |||||||||||    
T  22515926 aaaatcacataatttagtgtaattacaagtgtcggtgtcggacacgacacatatccgacaccgag-acacgcctaatccgaggagtgtccgtgcttcata 22515828  T
Q  130 gt 131  Q
    ||    
T  22515827 gt 22515826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 131
Target Start/End: Complemental strand, 46348422 - 46348322
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgaca-cgagaacactccttatccgagaagtgttcgtgcttcata 129  Q
    ||||||| |||||| |||| ||||| | ||||| ||||| ||||||||||||||| |||| |||| |||| ||| |||||||  |||| |||||||||||    
T  46348422 aaaatcatataatttagtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgag-acacgcctgatccgaggtgtgtccgtgcttcata 46348324  T
Q  130 gt 131  Q
    ||    
T  46348323 gt 46348322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 1815277 - 1815337
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacac 91  Q
    ||||||||||||||||||| ||||| | ||||| ||||| |||||||||| |||| |||||    
T  1815277 aaaatcacataattcagtgtaattacaagtgtcggtgtccgacacgacacatgtccgacac 1815337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 34371731 - 34371771
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtc 69  Q
    ||||||||||||||||||||| ||||||||||||| |||||    
T  34371731 agaaaatcacataattcagtgtaattatatgtgtcggtgtc 34371771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 44482248 - 44482288
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtc 69  Q
    ||||||||||||||||||||| ||||||||||||| |||||    
T  44482248 agaaaatcacataattcagtgtaattatatgtgtcggtgtc 44482288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 68
Target Start/End: Complemental strand, 1864921 - 1864882
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgt 68  Q
    ||||||||||||||||||||| ||||||||||||| ||||    
T  1864921 agaaaatcacataattcagtgtaattatatgtgtcggtgt 1864882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 130
Target Start/End: Original strand, 9828103 - 9828174
Alignment:
Q  59 gtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 130  Q
    ||||| ||||||||||||||||||||| |||||  | ||||  || ||||||| ||||| ||||||||||||    
T  9828103 gtgtccgtgtcagacacgacacgtgtccgacaccgggacacgtctaatccgaggagtgtccgtgcttcatag 9828174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 68
Target Start/End: Original strand, 10233271 - 10233310
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgt 68  Q
    ||||||||||||||||||||| ||||||||||||| ||||    
T  10233271 agaaaatcacataattcagtgtaattatatgtgtctgtgt 10233310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 17705626 - 17705576
Alignment:
Q  30 gaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacg 81  Q
    |||||||||||||||||||| ||||||||||||| ||||| ||| |||||||    
T  17705626 gaaaatcacataattcagtgtaattatatgtgtc-gtgtcggacgcgacacg 17705576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 2784574 - 2784620
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacac 75  Q
    |||||||||||||||| |||  ||||||||||||| |||||||||||    
T  2784574 agaaaatcacataattgagtataattatatgtgtcggtgtcagacac 2784620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 85
Target Start/End: Original strand, 13997903 - 13997957
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtc 85  Q
    ||||||||||||||||||| ||||||||||||| ||||  || ||||||| ||||    
T  13997903 aaaatcacataattcagtgtaattatatgtgtcggtgttggagacgacacatgtc 13997957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 131
Target Start/End: Complemental strand, 18556450 - 18556384
Alignment:
Q  65 gtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatagt 131  Q
    ||||||||| |||||||| || |||||  | |||| ||| ||||||||||||| |||||||||||||    
T  18556450 gtgtcagacccgacacgtatccgacactgggacacgcctaatccgagaagtgtccgtgcttcatagt 18556384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 75
Target Start/End: Complemental strand, 23636090 - 23636044
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacac 75  Q
    ||||||| ||||||||||||| |||| |||||||| |||||||||||    
T  23636090 agaaaattacataattcagtgtaattgtatgtgtcggtgtcagacac 23636044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 91
Target Start/End: Complemental strand, 43492535 - 43492473
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacac 91  Q
    |||||||||| |||||| ||| |||||| |||||| ||||||||||| |||| |||| |||||    
T  43492535 agaaaatcacgtaattcggtgtaattatgtgtgtcggtgtcagacacaacacatgtccgacac 43492473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 78
Target Start/End: Complemental strand, 14332683 - 14332634
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgac 78  Q
    |||||||||||||||| |||| |||||||||| || ||||| ||||||||    
T  14332683 agaaaatcacataatttagtgtaattatatgtctcggtgtcggacacgac 14332634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 62
Target Start/End: Complemental strand, 25098596 - 25098563
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgt 62  Q
    ||||||||||||||||||||| ||||||||||||    
T  25098596 agaaaatcacataattcagtgtaattatatgtgt 25098563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 76
Target Start/End: Original strand, 52903269 - 52903314
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtcagacacg 76  Q
    ||||||| ||||||||||| ||||||||||||| ||||| ||||||    
T  52903269 aaaatcatataattcagtgtaattatatgtgtcggtgtcggacacg 52903314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 13436479 - 13436523
Alignment:
Q  32 aaatcacataattcagtgcaattatatgtgtcagtgtcagacacg 76  Q
    |||||||||||||||||| ||||||||||||  ||||| ||||||    
T  13436479 aaatcacataattcagtgtaattatatgtgttggtgtcggacacg 13436523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 19324580 - 19324612
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtg 61  Q
    ||||||||||||||||||||| |||||||||||    
T  19324580 agaaaatcacataattcagtgtaattatatgtg 19324612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 20157391 - 20157351
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtc 69  Q
    ||||||||||||||||||||| ||| ||||||||| |||||    
T  20157391 agaaaatcacataattcagtgtaatcatatgtgtcggtgtc 20157351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 85
Target Start/End: Original strand, 28674818 - 28674874
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtc 85  Q
    ||||||| ||||||||||||  |||||||| |||  |||||||||||||||| ||||    
T  28674818 agaaaattacataattcagtataattatatatgttggtgtcagacacgacacttgtc 28674874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 34712424 - 34712384
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtc 69  Q
    ||||||| |||||||| |||| |||||||||||||||||||    
T  34712424 agaaaataacataatttagtgtaattatatgtgtcagtgtc 34712384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 130
Target Start/End: Complemental strand, 41597482 - 41597410
Alignment:
Q  58 tgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 130  Q
    |||||| ||||| |||||||||||||||||||||| | | || | |||||| || |||||  |||||||||||    
T  41597482 tgtgtccgtgtcggacacgacacgtgtctgacacggggatacgctttatccaaggagtgtctgtgcttcatag 41597410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 131
Target Start/End: Original strand, 47989556 - 47989628
Alignment:
Q  59 gtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatagt 131  Q
    ||||| ||||| |||||||||| |||||||||   | |||| ||| ||||||| ||||| |||||||||||||    
T  47989556 gtgtcggtgtcggacacgacacatgtctgacatcgggacacgcctaatccgaggagtgtccgtgcttcatagt 47989628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 29 - 128
Target Start/End: Original strand, 3025569 - 3025668
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcat 128  Q
    ||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||    ||||  || ||||||| ||||| ||||||||||    
T  3025569 agaaaatcacataattcagtgtaattataggtgtcagtgtcggacacgacacgtgtctgacactgtgacacggctaatccgaggagtgtccgtgcttcat 3025668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 31 - 130
Target Start/End: Complemental strand, 3951575 - 3951476
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 130  Q
    ||||||||| ||| ||||| | ||||||||||| |||||||||||||||||||||||||||| |||||| ||| |||| || ||| | ||||||||||||    
T  3951575 aaaatcacaaaatgcagtgtacttatatgtgtcggtgtcagacacgacacgtgtctgacacgggaacacgcctaatccaaggagtttccgtgcttcatag 3951476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 30 - 129
Target Start/End: Complemental strand, 43737851 - 43737752
Alignment:
Q  30 gaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcata 129  Q
    |||||||||| ||| ||||| ||||||||||||| ||||| ||||||||| |||||||||||| | | || |||||||| || ||||| |||||||||||    
T  43737851 gaaaatcacaaaatacagtgtaattatatgtgtcggtgtcggacacgacaggtgtctgacacggggatacgccttatccaaggagtgtccgtgcttcata 43737752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 29 - 130
Target Start/End: Original strand, 14134717 - 14134818
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcat 128  Q
    ||||||||||||||||||||| |||||||| |||| |||||| |||||||||||||| | ||| || |||| ||| || |||| ||||| |||| |||||    
T  14134717 agaaaatcacataattcagtgtaattatatatgtcggtgtcaaacacgacacgtgtccgtcaccaggacacgcctaattcgaggagtgtccgtgtttcat 14134816  T
Q  129 ag 130  Q
    ||    
T  14134817 ag 14134818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 59 - 133
Target Start/End: Complemental strand, 34451032 - 34450958
Alignment:
Q  59 gtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatagtgt 133  Q
    ||||| ||||| |||||||||||||||||||||| | |||| |||||||| || ||||| |||||||||||||||    
T  34451032 gtgtcggtgtcggacacgacacgtgtctgacacggggacacgccttatccaaggagtgtccgtgcttcatagtgt 34450958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 9414912 - 9414860
Alignment:
Q  33 aatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtc 85  Q
    ||||||||||||||||||||||||| ||||  |||||||||||||||||||||    
T  9414912 aatcacataattcagtgcaattataagtgttggtgtcagacacgacacgtgtc 9414860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 29 - 128
Target Start/End: Complemental strand, 20679436 - 20679337
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcat 128  Q
    ||||||||||||| ||||||| ||||||| ||||| ||||||||| | ||||||||| |||||  | |||| ||||| ||||| ||||| | ||||||||    
T  20679436 agaaaatcacatagttcagtgtaattataagtgtcggtgtcagacgcaacacgtgtccgacaccgggacacgccttaaccgaggagtgtccatgcttcat 20679337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 130
Target Start/End: Complemental strand, 26902216 - 26902104
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtc-----------agtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgt 117  Q
    ||||||||||||||||||||| |||||||||||||           |||||| ||||||||||||||||| |||| | |||| ||||||| ||| |||||    
T  26902216 agaaaatcacataattcagtgtaattatatgtgtcggtgtcgtatgagtgtcggacacgacacgtgtctggcacggggacacgccttatctgaggagtgt 26902117  T
Q  118 tcgtgcttcatag 130  Q
     ||||||||||||    
T  26902116 ccgtgcttcatag 26902104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 91
Target Start/End: Complemental strand, 33405425 - 33405363
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacac 91  Q
    |||||| ||||||||| |||| ||||||||||||| ||||| |||||||||| ||||||||||    
T  33405425 agaaaaacacataatttagtgtaattatatgtgtcggtgtcggacacgacacatgtctgacac 33405363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 84
Target Start/End: Complemental strand, 4786379 - 4786324
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgt 84  Q
    ||||||||||||||||||||| ||||||||||||| ||||| || |||||| ||||    
T  4786379 agaaaatcacataattcagtgtaattatatgtgtcggtgtcggatacgacatgtgt 4786324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 130
Target Start/End: Complemental strand, 36450793 - 36450694
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 130  Q
    ||||||||| ||||||||| ||||| | ||||  ||||| |||||||| |||||| ||||| || |||| ||| ||||||| |||||  |||||||||||    
T  36450793 aaaatcacagaattcagtgtaattacaagtgtaggtgtcggacacgacgcgtgtccgacaccaggacacgcctaatccgaggagtgtctgtgcttcatag 36450694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 108
Target Start/End: Original strand, 31557016 - 31557093
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatcc 108  Q
    ||||||||||||||||||| ||||| | || || |||||||||||||||| |||| ||||| || |||| ||| ||||    
T  31557016 aaaatcacataattcagtgtaattacaagtttcggtgtcagacacgacacatgtccgacaccaggacacgcctaatcc 31557093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 85
Target Start/End: Original strand, 40332209 - 40332265
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtc 85  Q
    ||||||||||||||||||||| ||||| | ||||| ||||  |||||||||||||||    
T  40332209 agaaaatcacataattcagtgtaattacaagtgtcggtgtgggacacgacacgtgtc 40332265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 128
Target Start/End: Complemental strand, 926829 - 926730
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcat 128  Q
    |||||||| |||  ||||||| ||||||| ||||| ||||| ||| ||||||||||| |||||  | |||  | ||||||||| ||||| ||||||||||    
T  926829 agaaaatctcattgttcagtgtaattataagtgtcggtgtcggacgcgacacgtgtccgacaccgggacatgctttatccgaggagtgtccgtgcttcat 926730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 117
Target Start/End: Original strand, 8293848 - 8293931
Alignment:
Q  34 atcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgt 117  Q
    ||||| |||||||||| ||||||||||||| |||||| ||| ||||| | ||||||||  | |||| ||| ||||||| |||||    
T  8293848 atcacgtaattcagtgtaattatatgtgtcggtgtcaaacatgacacatatctgacacctggacacacctaatccgaggagtgt 8293931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 130
Target Start/End: Original strand, 18407739 - 18407838
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 130  Q
    ||||||||||||||||||| ||||| | |||||  || | |||||||||| |||| ||||| || |||| ||| ||  ||| ||||| ||||||||||||    
T  18407739 aaaatcacataattcagtgtaattacaagtgtcgctgccggacacgacacatgtccgacactaggacacgcctaattggaggagtgtccgtgcttcatag 18407838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 85
Target Start/End: Complemental strand, 126366 - 126332
Alignment:
Q  51 aattatatgtgtcagtgtcagacacgacacgtgtc 85  Q
    ||||||||||||||||||| |||||||||||||||    
T  126366 aattatatgtgtcagtgtcggacacgacacgtgtc 126332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 69
Target Start/End: Complemental strand, 11927125 - 11927087
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtc 69  Q
    ||||||||||||||||||| ||||||||||||| |||||    
T  11927125 aaaatcacataattcagtgtaattatatgtgtcggtgtc 11927087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 75
Target Start/End: Complemental strand, 13844637 - 13844591
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacac 75  Q
    |||||||||||||||| |||| ||||||||||||| ||||| |||||    
T  13844637 agaaaatcacataattgagtgtaattatatgtgtcggtgtcggacac 13844591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 63
Target Start/End: Original strand, 34897103 - 34897137
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtc 63  Q
    ||||||||||||||||||||| |||||||||||||    
T  34897103 agaaaatcacataattcagtgtaattatatgtgtc 34897137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 86
Target Start/End: Complemental strand, 37283851 - 37283796
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtct 86  Q
    ||||||||||||||||||||| |||  |||||||| ||||  ||||||||||||||||    
T  37283851 agaaaatcacataattcagtgtaat--tatgtgtcggtgtgggacacgacacgtgtct 37283796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 69
Target Start/End: Original strand, 8847277 - 8847314
Alignment:
Q  32 aaatcacataattcagtgcaattatatgtgtcagtgtc 69  Q
    |||||||||||||||||| ||||||||||||| |||||    
T  8847277 aaatcacataattcagtgtaattatatgtgtcggtgtc 8847314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 62
Target Start/End: Original strand, 11803277 - 11803310
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgt 62  Q
    ||||||||||||||||||||| ||||||||||||    
T  11803277 agaaaatcacataattcagtgtaattatatgtgt 11803310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 74
Target Start/End: Complemental strand, 12606870 - 12606825
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagaca 74  Q
    ||||||||| |||||||| || ||||||||||||| ||||||||||    
T  12606870 agaaaatcatataattcaatgtaattatatgtgtcggtgtcagaca 12606825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 129
Target Start/End: Complemental strand, 29447109 - 29447040
Alignment:
Q  60 tgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcata 129  Q
    |||| ||||| ||||||||| ||||||||||| || |||| ||| |||| || ||||| |||||||||||    
T  29447109 tgtcggtgtcggacacgacatgtgtctgacaccaggacacgcctaatcctaggagtgtccgtgcttcata 29447040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 24362239 - 24362203
Alignment:
Q  33 aatcacataattcagtgcaattatatgtgtcagtgtc 69  Q
    ||||||||||||||||| |||||||||||||| ||||    
T  24362239 aatcacataattcagtgtaattatatgtgtcaatgtc 24362203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 31236618 - 31236570
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacga 77  Q
    |||||||||||||||||| || ||||||||||||| ||| | |||||||    
T  31236618 agaaaatcacataattcaatgtaattatatgtgtcggtgacggacacga 31236570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 36)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 31 - 130
Target Start/End: Original strand, 34595154 - 34595253
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 130  Q
    ||||||||||||||||||| ||||| | ||||| ||||| |||||||||||||||||||||  | |||| ||| ||||||| ||||| ||||||||||||    
T  34595154 aaaatcacataattcagtgtaattacaagtgtcggtgtcggacacgacacgtgtctgacaccgggacacacctaatccgaggagtgtccgtgcttcatag 34595253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 29 - 129
Target Start/End: Original strand, 9658897 - 9658998
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactcctta-tccgagaagtgttcgtgcttca 127  Q
    ||||||||||||||||||||| |||||||| |||| |||| ||||||||||||||||||||||  |||||| ||| | ||| || ||||| |||||||||    
T  9658897 agaaaatcacataattcagtgtaattatatttgtcggtgttagacacgacacgtgtctgacaccggaacacgcctaattccaaggagtgtccgtgcttca 9658996  T
Q  128 ta 129  Q
    ||    
T  9658997 ta 9658998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 31 - 131
Target Start/End: Original strand, 28152118 - 28152218
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 130  Q
    ||||||||||||||||||| ||||| | ||||| ||||| ||||||||||||||| |||||  | |||  ||| ||||||| ||||||||||||||||||    
T  28152118 aaaatcacataattcagtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgggacaggcctaatccgaggagtgttcgtgcttcatag 28152217  T
Q  131 t 131  Q
    |    
T  28152218 t 28152218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 130
Target Start/End: Complemental strand, 17327696 - 17327590
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtca-----gacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgc 123  Q
    |||||||||||||||| |||| || ||||||||||||||||      |||||||||||||||||||||  | |||| ||| ||||||| ||||| |||||    
T  17327696 agaaaatcacataatttagtgtaactatatgtgtcagtgtcgtgtcggacacgacacgtgtctgacacagggacacgcctaatccgaggagtgtccgtgc 17327597  T
Q  124 ttcatag 130  Q
    |||||||    
T  17327596 ttcatag 17327590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 11968749 - 11968709
Alignment:
Q  196 gcatgaatgtttatgttatgttcatgtttgattttagttgt 236  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  11968749 gcatgaatgtttatgttatgttcatgtttgattttagttgt 11968709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 33001328 - 33001268
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacac 91  Q
    |||||||||||||| | || ||||||||||||| ||||| |||||||||||||||||||||    
T  33001328 aaaatcacataattaaatgtaattatatgtgtcggtgtcggacacgacacgtgtctgacac 33001268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 59 - 130
Target Start/End: Original strand, 18367895 - 18367966
Alignment:
Q  59 gtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 130  Q
    ||||| |||||||||||||||| ||||||||||| | |||| |||||||| || ||||| ||||||||||||    
T  18367895 gtgtcggtgtcagacacgacacatgtctgacacggggacacgccttatccaaggagtgtccgtgcttcatag 18367966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 19040370 - 19040421
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacac 80  Q
    ||||||||||||||||||||| ||||||||||||| ||||| ||||||||||    
T  19040370 agaaaatcacataattcagtgtaattatatgtgtctgtgtcggacacgacac 19040421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 31 - 130
Target Start/End: Original strand, 28715315 - 28715414
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 130  Q
    ||||| ||||||||||||| ||||| | ||||| ||||| ||||||||||||||  |||||  | |||| ||| || |||||||||| ||||||||||||    
T  28715315 aaaatgacataattcagtgtaattacaagtgtcggtgtcggacacgacacgtgttcgacaccgggacacgcctaattcgagaagtgtacgtgcttcatag 28715414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 130
Target Start/End: Original strand, 7377997 - 7378098
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcat 128  Q
    |||||||||||||||||| || ||||||||||||| ||||| ||||||||| |  || |||||  | ||||  || ||| ||||||||| ||||||||||    
T  7377997 agaaaatcacataattcaatgtaattatatgtgtcggtgtcggacacgacatgcatccgacaccgggacacggctaatctgagaagtgtccgtgcttcat 7378096  T
Q  129 ag 130  Q
    ||    
T  7378097 ag 7378098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 130
Target Start/End: Original strand, 4388103 - 4388199
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcat 128  Q
    ||||||||||||||| ||| | ||||||||||||||||||| |   ||    |||||||||||||| |||| |||||||||||||||||  |||||||||    
T  4388103 agaaaatcacataatccagggtaattatatgtgtcagtgtc-gtggcg----gtgtctgacacgaggacacgccttatccgagaagtgtctgtgcttcat 4388197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 7740660 - 7740712
Alignment:
Q  30 gaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgt 82  Q
    |||||||||| |||| |||| ||||||||||||||||||| ||||||||||||    
T  7740660 gaaaatcacaaaattgagtgtaattatatgtgtcagtgtcggacacgacacgt 7740712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 59 - 131
Target Start/End: Complemental strand, 16488590 - 16488518
Alignment:
Q  59 gtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatagt 131  Q
    ||||| ||||| ||||||||||||||||| |||| | |||| |||||||| || | |||||||||||||||||    
T  16488590 gtgtcggtgtcggacacgacacgtgtctggcacggggacacgccttatccaaggaatgttcgtgcttcatagt 16488518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 128
Target Start/End: Complemental strand, 7265634 - 7265535
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcat 128  Q
    ||||||||||||||||||||| ||||||||||||| ||||| ||||| | || |||| |||||  ||| |  ||| ||||||| || || ||||||||||    
T  7265634 agaaaatcacataattcagtgtaattatatgtgtcggtgtcggacacaatacatgtccgacaccggaatatgcctaatccgaggagcgtccgtgcttcat 7265535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 131
Target Start/End: Complemental strand, 13360413 - 13360312
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacac-gagaacactccttatccgagaagtgttcgtgcttca 127  Q
    ||||||||||||||||||||| |||||||||| || ||||||||||| |||  |||| ||||| ||| |||| ||| ||||||  ||||| |||||||||    
T  13360413 agaaaatcacataattcagtgtaattatatgtttcggtgtcagacacaaca-atgtccgacactgag-acacgcctaatccgaagagtgtccgtgcttca 13360316  T
Q  128 tagt 131  Q
    ||||    
T  13360315 tagt 13360312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 130
Target Start/End: Original strand, 13789174 - 13789273
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 130  Q
    ||||||| | ||| ||||| |||||||||| ||| |||| |||| ||||||||||||||| | | | || |||||| | || ||||||||||||||||||    
T  13789174 aaaatcataaaatgcagtgtaattatatgtatcaatgtcggacatgacacgtgtctgacatggggatacgccttattcaaggagtgttcgtgcttcatag 13789273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 130
Target Start/End: Original strand, 13797793 - 13797892
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 130  Q
    ||||||| | ||| ||||| |||||||||| ||| |||| |||| ||||||||||||||| | | | || |||||| | || ||||||||||||||||||    
T  13797793 aaaatcataaaatgcagtgtaattatatgtatcaatgtcggacatgacacgtgtctgacatggggatacgccttattcaaggagtgttcgtgcttcatag 13797892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 144
Target Start/End: Complemental strand, 32511707 - 32511592
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcat 128  Q
    ||||||||||||||||||||| ||||||| ||||  ||||| || ||||||  |||||||||   || ||| ||| ||| ||| ||||| ||||||||||    
T  32511707 agaaaatcacataattcagtgtaattataagtgttggtgtcggatacgacatatgtctgacatcggagcacgcctaatcggaggagtgtccgtgcttcat 32511608  T
Q  129 agtgtccaactaatgt 144  Q
    |||  |||| ||||||    
T  32511607 agttcccaaataatgt 32511592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 160
Target Start/End: Complemental strand, 11968782 - 11968749
Alignment:
Q  127 atagtgtccaactaatgtaccttttactatatcg 160  Q
    ||||||||||||||||||||||||||||||||||    
T  11968782 atagtgtccaactaatgtaccttttactatatcg 11968749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 9025535 - 9025495
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtc 69  Q
    ||||||||||||||||||||| ||||||||||||| |||||    
T  9025535 agaaaatcacataattcagtgtaattatatgtgtcggtgtc 9025495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 24645501 - 24645561
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacac 91  Q
    ||||||||||||||||||  | ||| | ||||| ||||||||||||||||||||| |||||    
T  24645501 aaaatcacataattcagtatagttacaagtgtcggtgtcagacacgacacgtgtccgacac 24645561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 130
Target Start/End: Original strand, 4877967 - 4878061
Alignment:
Q  35 tcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 130  Q
    |||||||||| |||  ||||| | ||||| ||||| |||||||||| |||| ||||| || |||| ||| ||||||| ||||| ||||||||||||    
T  4877967 tcacataattaagtataattacaagtgtcggtgtcggacacgacacatgtccgacac-aggacacgcctaatccgaggagtgtccgtgcttcatag 4878061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 113
Target Start/End: Complemental strand, 12627616 - 12627534
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgaca-cgagaacactccttatccgagaa 113  Q
    ||||||||||||||||||| ||| |||||||||  |||| ||||| |||| |||| |||| |||| |||||||| |||||||||    
T  12627616 aaaatcacataattcagtgtaataatatgtgtcgatgtcggacaccacacatgtccgacaccgag-acactcctaatccgagaa 12627534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 130
Target Start/End: Original strand, 16833328 - 16833427
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 130  Q
    ||||||||||| ||||||| ||||| | ||||| |||| |||||||||||| ||| ||||| || |||| ||  ||||||| |||||  || ||||||||    
T  16833328 aaaatcacatacttcagtgtaattacaagtgtcggtgttagacacgacacgcgtccgacaccaggacacaccgaatccgaggagtgtctgtacttcatag 16833427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 129
Target Start/End: Complemental strand, 17841628 - 17841530
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacac-gagaacactccttatccgagaagtgttcgtgcttcata 129  Q
    |||||||||||||| |||| ||||| | ||| | ||||| ||||||||| ||||| ||||| ||| |||| ||| ||||||| ||||| |||||||||||    
T  17841628 aaaatcacataatttagtgtaattacaagtgacggtgtcggacacgacatgtgtccgacactgag-acacgcctaatccgaggagtgtccgtgcttcata 17841530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 87
Target Start/End: Original strand, 30851620 - 30851676
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctg 87  Q
    |||||||||||  ||||| || ||||||||||||| ||||| |||||||||||||||||    
T  30851620 agaaaatcaca--attcaatgtaattatatgtgtcggtgtcggacacgacacgtgtctg 30851676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 69
Target Start/End: Original strand, 7027262 - 7027300
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtc 69  Q
    ||||||||||||||||||| ||||||||||||| |||||    
T  7027262 aaaatcacataattcagtgtaattatatgtgtcggtgtc 7027300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 63
Target Start/End: Complemental strand, 11591911 - 11591877
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtc 63  Q
    ||||||||||||||||||||| |||||||||||||    
T  11591911 agaaaatcacataattcagtgtaattatatgtgtc 11591877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 128
Target Start/End: Original strand, 12696344 - 12696446
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtca-----gacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgctt 125  Q
    ||||| ||||||||||||| ||||| | |||||||||||      |||||||||||||||||||||  | |||| |||||||| || |||||  ||||||    
T  12696344 aaaattacataattcagtgtaattacaagtgtcagtgtcgtgtcggacacgacacgtgtctgacaccgggacacaccttatccaaggagtgtctgtgctt 12696443  T
Q  126 cat 128  Q
    |||    
T  12696444 cat 12696446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 91
Target Start/End: Complemental strand, 13364746 - 13364684
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacac 91  Q
    ||||||||| ||||||||||| ||| ||||||||| ||||  ||||||| || ||||||||||    
T  13364746 agaaaatcatataattcagtgtaatcatatgtgtcggtgttggacacgatacatgtctgacac 13364684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 63
Target Start/End: Original strand, 26562707 - 26562741
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtc 63  Q
    ||||||||||||||||||||| |||||||||||||    
T  26562707 agaaaatcacataattcagtgtaattatatgtgtc 26562741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 84
Target Start/End: Original strand, 29020932 - 29020985
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgt 84  Q
    |||||| |||||||||||| ||||||| ||||  ||||| ||||||||||||||    
T  29020932 aaaatcgcataattcagtgtaattataggtgtttgtgtcggacacgacacgtgt 29020985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 31579266 - 31579212
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtc 85  Q
    ||||||||||||||||||||| |||  |||||||| ||||| |||||||||| ||||    
T  31579266 agaaaatcacataattcagtgtaat--tatgtgtcggtgtcggacacgacacatgtc 31579212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 9617452 - 9617492
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtc 69  Q
    |||||||||||||||||| || ||||||||||||| |||||    
T  9617452 agaaaatcacataattcaatgtaattatatgtgtcggtgtc 9617492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 9629401 - 9629441
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtc 69  Q
    |||||||||||||||||| || ||||||||||||| |||||    
T  9629401 agaaaatcacataattcaatgtaattatatgtgtcggtgtc 9629441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 14796231 - 14796191
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtc 69  Q
    ||||||||||||||||||| |||||||||| |||| |||||    
T  14796231 agaaaatcacataattcagcgcaattatatatgtcggtgtc 14796191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 33 - 131
Target Start/End: Complemental strand, 30099075 - 30098977
Alignment:
Q  33 aatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatagt 131  Q
    |||| |||||||| ||| ||||||||||||| ||||| || ||||||||||||||||||| | |||| |||||||| || |||||||||||||| ||||    
T  30099075 aatcgcataattctgtgtaattatatgtgtcggtgtcggatacgacacgtgtctgacacggggacacgccttatccaaggagtgttcgtgcttcgtagt 30098977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 31 - 130
Target Start/End: Complemental strand, 21576784 - 21576685
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 130  Q
    ||||||||||||||||||| ||||| | |||||  |||| |||||||||||||||||||||  | |||| ||| ||||||| ||||| ||||||||||||    
T  21576784 aaaatcacataattcagtgtaattacaagtgtcgatgtcggacacgacacgtgtctgacactgggacacgcctaatccgaggagtgtccgtgcttcatag 21576685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 29 - 130
Target Start/End: Original strand, 42029770 - 42029871
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcat 128  Q
    |||||||||||||||||| || |||||||||| || ||||| |||||||||| |||||| ||||   |||| ||||||||||| ||||| ||||| ||||    
T  42029770 agaaaatcacataattcaatgtaattatatgtatcggtgtcggacacgacacatgtctgtcacgtagacacgccttatccgaggagtgtccgtgcatcat 42029869  T
Q  129 ag 130  Q
    ||    
T  42029870 ag 42029871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 130
Target Start/End: Original strand, 43564901 - 43565000
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 130  Q
    |||||||||||||| |||| ||||||| ||||| ||||| ||||||||| ||||| ||| |  | |||| ||| ||||||||||||| ||||||||||||    
T  43564901 aaaatcacataatttagtgtaattataagtgtcggtgtcggacacgacatgtgtccgacgccgggacacgcctaatccgagaagtgtccgtgcttcatag 43565000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 29 - 130
Target Start/End: Complemental strand, 28588715 - 28588614
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcat 128  Q
    ||||||||||||||||||||| ||||||| ||||| ||||| |||||||||| | |||||||| || |||| | | ||||||  ||||| | ||||||||    
T  28588715 agaaaatcacataattcagtgtaattataggtgtcggtgtcggacacgacacatatctgacaccaggacacgcttaatccgaagagtgtccatgcttcat 28588616  T
Q  129 ag 130  Q
    ||    
T  28588615 ag 28588614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 117
Target Start/End: Original strand, 26312787 - 26312875
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgt 117  Q
    |||||||||  |||||||||| |||||||||| || ||||| ||||||| ||||||||||||| || |||| ||| ||||||| |||||    
T  26312787 agaaaatcaattaattcagtgtaattatatgtatcggtgtcggacacgatacgtgtctgacaccaggacacacctaatccgaggagtgt 26312875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 29 - 128
Target Start/End: Complemental strand, 30502429 - 30502330
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcat 128  Q
    |||||||||| |||||||||| ||||||||||||| ||||| |||||||||| |||| |||||  | |||  ||| |||| || | ||||||||||||||    
T  30502429 agaaaatcacttaattcagtgtaattatatgtgtcggtgtcggacacgacacatgtccgacactgggacatgcctaatccaaggattgttcgtgcttcat 30502330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 29 - 128
Target Start/End: Complemental strand, 30542772 - 30542673
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcat 128  Q
    |||||||||| |||||||||| ||||||||||||| ||||| |||||||||| |||| |||||  | |||  ||| |||| || | ||||||||||||||    
T  30542772 agaaaatcacttaattcagtgtaattatatgtgtcggtgtcggacacgacacatgtccgacactgggacatgcctaatccaaggattgttcgtgcttcat 30542673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 129
Target Start/End: Original strand, 6401557 - 6401627
Alignment:
Q  59 gtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcata 129  Q
    ||||||||||| |||||||||||||||||||||| | | || |||||||| || ||||| |||||||||||    
T  6401557 gtgtcagtgtcggacacgacacgtgtctgacacggggatacgccttatccaaggagtgtccgtgcttcata 6401627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 128
Target Start/End: Complemental strand, 21191095 - 21190998
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcat 128  Q
    ||||||||||||||||||| ||||| | ||||| ||||| ||||| ||||||||| ||| |  | |||| ||| ||||||| ||||| ||||||||||    
T  21191095 aaaatcacataattcagtgtaattacaagtgtcggtgtcggacacaacacgtgtccgactccgggacacgcctaatccgaggagtgtccgtgcttcat 21190998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 59 - 131
Target Start/End: Original strand, 21814320 - 21814392
Alignment:
Q  59 gtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatagt 131  Q
    ||||| ||||| ||||||||||||||||| |||| | |||| |||||||| || | |||||||||||||||||    
T  21814320 gtgtcggtgtcggacacgacacgtgtctggcacggggacacgccttatccaaggaatgttcgtgcttcatagt 21814392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 84
Target Start/End: Original strand, 12927672 - 12927727
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgt 84  Q
    ||||||||| |||||| |||| |||||||| ||||||||||||||| |||||||||    
T  12927672 agaaaatcatataatttagtgtaattatatatgtcagtgtcagacatgacacgtgt 12927727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 130
Target Start/End: Original strand, 42893380 - 42893479
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 130  Q
    ||||||||||||| ||||| ||||| | ||||| ||||||||||| ||||||||| ||||| || |||| ||| ||  ||| ||||| | ||||||||||    
T  42893380 aaaatcacataatccagtgtaattacaagtgtcggtgtcagacacaacacgtgtccgacaccaggacacgcctaatatgaggagtgtccatgcttcatag 42893479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 131
Target Start/End: Original strand, 17123066 - 17123167
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcat 128  Q
    |||||||||||||||  ||| ||||||||| |||| ||||  ||||||| || |||| |||||| | |||| ||| ||||||| ||||| ||||||||||    
T  17123066 agaaaatcacataatcaagtacaattatatatgtcggtgttggacacgaaacatgtccgacacg-ggacacgcctaatccgaggagtgtccgtgcttcat 17123164  T
Q  129 agt 131  Q
    |||    
T  17123165 agt 17123167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 61 - 131
Target Start/End: Original strand, 30098387 - 30098457
Alignment:
Q  61 gtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatagt 131  Q
    ||||||||| ||||||||||||||| ||||| || |||| ||| ||||||| | ||| |||||||||||||    
T  30098387 gtcagtgtcggacacgacacgtgtcagacaccaggacacacctaatccgaggaatgtccgtgcttcatagt 30098457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 130
Target Start/End: Original strand, 27932253 - 27932354
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcat 128  Q
    ||||||| ||||||||||||| ||||| |  | |  ||||| ||||||||||||||| ||||| || |||| ||| || |||| |||||| |||||||||    
T  27932253 agaaaattacataattcagtgtaattacaaatcttggtgtcggacacgacacgtgtcggacaccaggacacgcctaattcgaggagtgtttgtgcttcat 27932352  T
Q  129 ag 130  Q
    ||    
T  27932353 ag 27932354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 90
Target Start/End: Complemental strand, 32630776 - 32630715
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgaca 90  Q
    ||||||| | |||||||| || ||||||||||||||||||| || |||||||||||| ||||    
T  32630776 agaaaattatataattcaatgtaattatatgtgtcagtgtcggatacgacacgtgtccgaca 32630715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 18421882 - 18421826
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtc 85  Q
    ||||||||||||||| ||||| ||||||||||||| | ||| |||||||||| ||||    
T  18421882 agaaaatcacataatccagtgtaattatatgtgtcggcgtcggacacgacacatgtc 18421826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 91
Target Start/End: Complemental strand, 23012449 - 23012387
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacac 91  Q
    ||||||||| |||||| | || ||||||||||||| ||||  |||||||||| ||||||||||    
T  23012449 agaaaatcatataatttaatgtaattatatgtgtcggtgttggacacgacacatgtctgacac 23012387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 63
Target Start/End: Original strand, 39758290 - 39758324
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtc 63  Q
    ||||||||||||||||||||| |||||||||||||    
T  39758290 agaaaatcacataattcagtgtaattatatgtgtc 39758324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 63
Target Start/End: Complemental strand, 41091298 - 41091264
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtc 63  Q
    ||||||||||||||||||||| |||||||||||||    
T  41091298 agaaaatcacataattcagtgtaattatatgtgtc 41091264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 62
Target Start/End: Complemental strand, 6471930 - 6471897
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgt 62  Q
    ||||||||||||||||||||| ||||||||||||    
T  6471930 agaaaatcacataattcagtgtaattatatgtgt 6471897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 85
Target Start/End: Original strand, 6770561 - 6770615
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtc 85  Q
    ||||||||||||||||||||| | ||||  ||||||||||| |||||||||| ||||    
T  6770561 agaaaatcacataattcagtgtacttat--gtgtcagtgtcggacacgacacatgtc 6770615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 80
Target Start/End: Original strand, 15884008 - 15884057
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacac 80  Q
    ||||||||||||||||||| ||||| | ||||| ||||| ||||||||||    
T  15884008 aaaatcacataattcagtgtaattacaagtgtcggtgtcggacacgacac 15884057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 3966521 - 3966561
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtc 69  Q
    ||||||||||| ||||||||| ||||||||||||| |||||    
T  3966521 agaaaatcacacaattcagtgtaattatatgtgtcggtgtc 3966561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 61
Target Start/End: Complemental strand, 24273071 - 24273039
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtg 61  Q
    ||||||||||||||||||||| |||||||||||    
T  24273071 agaaaatcacataattcagtgtaattatatgtg 24273039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 24389143 - 24389175
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtg 61  Q
    ||||||||||||||||||||| |||||||||||    
T  24389143 agaaaatcacataattcagtgtaattatatgtg 24389175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 29 - 130
Target Start/End: Complemental strand, 18213074 - 18212973
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcat 128  Q
    |||||||||||||||| |||| ||||||||||||| ||||| |||||||| | | ||||||||| | |||| ||||||||||| |||||  |||||||||    
T  18213074 agaaaatcacataatttagtgtaattatatgtgtcggtgtcggacacgacccctttctgacacggggacacgccttatccgaggagtgtctgtgcttcat 18212975  T
Q  129 ag 130  Q
    ||    
T  18212974 ag 18212973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 29 - 130
Target Start/End: Original strand, 21880170 - 21880271
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcat 128  Q
    ||||||| ||||||||||||| ||||| | ||||| ||||| |||||||||| |||| ||||| || |||| ||| ||||||||||||| ||||||||||    
T  21880170 agaaaattacataattcagtgtaattacaagtgtcggtgtcggacacgacacatgtccgacaccaggacacgcctaatccgagaagtgtccgtgcttcat 21880269  T
Q  129 ag 130  Q
    ||    
T  21880270 ag 21880271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 29 - 129
Target Start/End: Complemental strand, 32287504 - 32287404
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcat 128  Q
    |||||||||||||||||||||||| |||||||||| ||||| |||| |||| ||||| |||||  | |||| ||| ||||||| ||||| ||||||||||    
T  32287504 agaaaatcacataattcagtgcaagtatatgtgtcggtgtcggacatgacaagtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcat 32287405  T
Q  129 a 129  Q
    |    
T  32287404 a 32287404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 29 - 130
Target Start/End: Original strand, 598226 - 598327
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcat 128  Q
    |||||||||| ||||| | || |||| || ||||| ||||||||||||||||||||| |||||  | |||| ||| ||||||||||||| ||||||||||    
T  598226 agaaaatcacgtaattaaatgtaattgtaagtgtcggtgtcagacacgacacgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttcat 598325  T
Q  129 ag 130  Q
    ||    
T  598326 ag 598327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 131
Target Start/End: Original strand, 5835265 - 5835367
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcat 128  Q
    ||||||| ||||||||||||| ||||||||||||| |||||||||| |||| |||||||| ||  | |||| | | ||||||||||||||  ||||| ||    
T  5835265 agaaaataacataattcagtgtaattatatgtgtcggtgtcagacatgacatgtgtctgataccgggacacgcttaatccgagaagtgtttttgctttat 5835364  T
Q  129 agt 131  Q
    |||    
T  5835365 agt 5835367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 32 - 129
Target Start/End: Complemental strand, 18035902 - 18035806
Alignment:
Q  32 aaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcata 129  Q
    |||||||||||||||| | ||||| |||||||||||| ||| | ||||| ||||||||||| ||||||  || ||||||| ||||| |||||||||||    
T  18035902 aaatcacataattcagcgtaattacatgtgtcagtgtgagataggacacatgtctgacacg-gaacacgtctaatccgaggagtgtccgtgcttcata 18035806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 29 - 108
Target Start/End: Original strand, 39138462 - 39138541
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatcc 108  Q
    ||||||||||||||||||||| |||||||| |||| ||||| ||||||| || ||||| ||||| | |||| ||||||||    
T  39138462 agaaaatcacataattcagtgtaattatatatgtcggtgtcggacacgatacatgtctaacacggggacacgccttatcc 39138541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 110
Target Start/End: Complemental strand, 27093454 - 27093373
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccga 110  Q
    |||||||||||||||| |||| ||||||||| ||| |||| |||||||||| ||||| ||||| || |||| ||| ||||||    
T  27093454 agaaaatcacataatttagtgtaattatatgcgtcggtgttagacacgacatgtgtccgacactaggacacacctaatccga 27093373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 110
Target Start/End: Original strand, 27184847 - 27184928
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccga 110  Q
    |||||||||||||||| |||| ||||||||| ||| |||| |||||||||| ||||| ||||| || |||| ||| ||||||    
T  27184847 agaaaatcacataatttagtgtaattatatgcgtcggtgttagacacgacatgtgtccgacactaggacacacctaatccga 27184928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 80
Target Start/End: Original strand, 640134 - 640182
Alignment:
Q  32 aaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacac 80  Q
    |||||||||||||||||| ||||||||||||| |||||||| |||||||    
T  640134 aaatcacataattcagtgtaattatatgtgtcggtgtcagatacgacac 640182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 31 - 130
Target Start/End: Complemental strand, 5409875 - 5409771
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtca-----gacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgctt 125  Q
    ||||||||||||||||||||||||| | ||||| |||||      ||||||||||||||| |||||  | |||| ||| ||||||| ||||| |||||||    
T  5409875 aaaatcacataattcagtgcaattacaagtgtcggtgtcgtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgctt 5409776  T
Q  126 catag 130  Q
    |||||    
T  5409775 catag 5409771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 15680829 - 15680889
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacac 91  Q
    |||||||||||||| |||| ||||||| ||||| ||||| ||||||||||||||| |||||    
T  15680829 aaaatcacataatttagtgtaattataagtgtcggtgtcggacacgacacgtgtccgacac 15680889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 130
Target Start/End: Original strand, 33994236 - 33994331
Alignment:
Q  35 tcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgaca-cgagaacactccttatccgagaagtgttcgtgcttcatag 130  Q
    ||||||||||||||||||||| | ||||| |||||||||||||||| ||||  ||| |||| |||| ||| |||| || |||||||||| |||||||    
T  33994236 tcacataattcagtgcaattacaagtgtcggtgtcagacacgacacatgtccaacaccgag-acacgcctaatccaaggagtgttcgtgtttcatag 33994331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 22868060 - 22868111
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacac 80  Q
    ||||||||||||||||||||| |||||||||||||||| ||| |||| ||||    
T  22868060 agaaaatcacataattcagtgtaattatatgtgtcagtatcaaacacaacac 22868111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 90
Target Start/End: Original strand, 20549809 - 20549870
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgaca 90  Q
    |||||||||| |||||||||| ||||||||||||| ||||| ||||| |||| |||| ||||    
T  20549809 agaaaatcacgtaattcagtgtaattatatgtgtcggtgtcggacacaacacatgtccgaca 20549870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 129
Target Start/End: Original strand, 22484043 - 22484143
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgaca-cgagaacactccttatccgagaagtgttcgtgcttca 127  Q
    |||||||  |||||||||||  ||||||||||||| |||||||||| ||||| |||| |||| |||| |||   || ||||||||||||| |||||||||    
T  22484043 agaaaattgcataattcagtataattatatgtgtcggtgtcagacatgacacatgtccgacatcgag-acatgtctgatccgagaagtgtccgtgcttca 22484141  T
Q  128 ta 129  Q
    ||    
T  22484142 ta 22484143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 5548694 - 5548734
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtc 69  Q
    ||||||||| ||||||||||| |||||||||||||||||||    
T  5548694 agaaaatcaaataattcagtgtaattatatgtgtcagtgtc 5548734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 22602751 - 22602711
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtc 69  Q
    ||||||||||||||||||||| ||||||||||||| |||||    
T  22602751 agaaaatcacataattcagtgtaattatatgtgtcggtgtc 22602711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 85
Target Start/End: Original strand, 23191914 - 23191969
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtc 85  Q
    ||||||||||||| ||||||| ||||| |||| ||||||||||||||| ||||||||    
T  23191914 agaaaatcacatatttcagtgtaattacatgtttcagtgtcagacacg-cacgtgtc 23191969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 111
Target Start/End: Original strand, 26733324 - 26733404
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgag 111  Q
    ||||||||||||||||||  ||||| ||||||| ||||| |||||||| | |||| || ||| |||||| ||| |||||||    
T  26733324 aaaatcacataattcagtctaattaaatgtgtcggtgtcggacacgacgcatgtccgatacgggaacacgcctaatccgag 26733404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 32308138 - 32308178
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtc 69  Q
    ||||||||||||||||||||| |||| ||||||||||||||    
T  32308138 agaaaatcacataattcagtgtaattgtatgtgtcagtgtc 32308178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 9482952 - 9483003
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacac 80  Q
    ||||||||||| ||||||||| ||||||||||||| ||||| ||| ||||||    
T  9482952 agaaaatcacacaattcagtgtaattatatgtgtcggtgtcggacgcgacac 9483003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 68
Target Start/End: Original strand, 17851449 - 17851488
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgt 68  Q
    ||||||||||||||||||||| ||||||||||||| ||||    
T  17851449 agaaaatcacataattcagtgtaattatatgtgtctgtgt 17851488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 131
Target Start/End: Complemental strand, 32094020 - 32093953
Alignment:
Q  65 gtgtcagacacgacacgtgtctgacac-gagaacactccttatccgagaagtgttcgtgcttcatagt 131  Q
    ||||| ||||||||||||||| ||||| | | |||| ||| ||||||| |||||||||||||||||||    
T  32094020 gtgtcggacacgacacgtgtccgacaccggggacacgcctaatccgaggagtgttcgtgcttcatagt 32093953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 130
Target Start/End: Complemental strand, 42720929 - 42720830
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 130  Q
    |||||||||||||| | || ||||||||||||||||||| ||||| ||| ||||   ||||  ||||||  || || ||| ||||||| |||||||||||    
T  42720929 aaaatcacataattaaatgtaattatatgtgtcagtgtctgacacaacatgtgtacaacaccggaacacgtctaattcgataagtgtttgtgcttcatag 42720830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 69
Target Start/End: Complemental strand, 18013113 - 18013075
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtc 69  Q
    ||||| ||||||||||||| |||||||||||||||||||    
T  18013113 aaaattacataattcagtgtaattatatgtgtcagtgtc 18013075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 130
Target Start/End: Complemental strand, 43027469 - 43027404
Alignment:
Q  65 gtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 130  Q
    ||||||||||||||||||||| |||||  | |||| ||| ||||||  ||||| ||||||||||||    
T  43027469 gtgtcagacacgacacgtgtccgacaccgggacacgcctaatccgatgagtgtccgtgcttcatag 43027404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 31 - 127
Target Start/End: Original strand, 70298 - 70394
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttca 127  Q
    ||||| ||||||||||||| ||||||| ||||| ||||| ||||||||||||||| ||||| || |||  ||| ||||||  |||||||||||||||    
T  70298 aaaataacataattcagtgtaattataagtgtcggtgtcggacacgacacgtgtccgacaccaggacatgcctaatccgatgagtgttcgtgcttca 70394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 129
Target Start/End: Complemental strand, 501 - 403
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcata 129  Q
    ||||||||| ||||||||| ||||| | ||||| ||||| |||||||| |||||| |||||  | |||| ||| ||||||| ||||| |||||||||||    
T  501 aaaatcacaaaattcagtgtaattacaagtgtcggtgtcggacacgacgcgtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcata 403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 131
Target Start/End: Original strand, 90861 - 90963
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcat 128  Q
    ||||||||| ||||||||||| |||||||| ||||  |||||||||| ||||||||| ||||| | ||||| ||| |||| |  |||||  |||||||||    
T  90861 agaaaatcatataattcagtgtaattatatatgtcgatgtcagacacaacacgtgtccgacaccaaaacacgcctaatccaatgagtgtatgtgcttcat 90960  T
Q  129 agt 131  Q
    |||    
T  90961 agt 90963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 128
Target Start/End: Original strand, 13418 - 13523
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatg------tgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtg 122  Q
    ||||||||||||||||||||||||||| | |      |||| ||||| ||||||||||| ||||||||| || |||| ||| |||| || ||||| ||||    
T  13418 agaaaatcacataattcagtgcaattacaagggtcggtgtcggtgtcggacacgacacgcgtctgacactaggacacacctaatccaaggagtgtccgtg 13517  T
Q  123 cttcat 128  Q
    ||||||    
T  13518 cttcat 13523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 128
Target Start/End: Complemental strand, 21909 - 21804
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatg------tgtcagtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtg 122  Q
    ||||||||||||||||||||||||||| | |      |||| ||||| ||||||||||| ||||||||| || |||| ||| |||| || ||||| ||||    
T  21909 agaaaatcacataattcagtgcaattacaagggtcggtgtcggtgtcggacacgacacgcgtctgacactaggacacacctaatccaaggagtgtccgtg 21810  T
Q  123 cttcat 128  Q
    ||||||    
T  21809 cttcat 21804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 37 - 91
Target Start/End: Complemental strand, 45563 - 45509
Alignment:
Q  37 acataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtctgacac 91  Q
    ||||||||||||| ||||| | ||||| ||||| |||||||||||||||||||||    
T  45563 acataattcagtgtaattacaagtgtcggtgtcggacacgacacgtgtctgacac 45509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 130
Target Start/End: Original strand, 241659 - 241724
Alignment:
Q  65 gtgtcagacacgacacgtgtctgacacgagaacactccttatccgagaagtgttcgtgcttcatag 130  Q
    ||||| ||||||||||||||| |||||  | |||| ||| ||||||||||||| ||||||||||||    
T  241659 gtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttcatag 241724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 69
Target Start/End: Original strand, 23531 - 23569
Alignment:
Q  31 aaaatcacataattcagtgcaattatatgtgtcagtgtc 69  Q
    ||||||||||||||||||| ||||||| |||||||||||    
T  23531 aaaatcacataattcagtgtaattataagtgtcagtgtc 23569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 63
Target Start/End: Complemental strand, 44566 - 44532
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtc 63  Q
    ||||||||||||||||||||| |||||||||||||    
T  44566 agaaaatcacataattcagtgtaattatatgtgtc 44532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 63791 - 63837
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacac 75  Q
    ||||||| ||||||||||||||||||| | ||||| |||||||||||    
T  63791 agaaaattacataattcagtgcaattacaagtgtcggtgtcagacac 63837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0279 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 85
Target Start/End: Original strand, 17788 - 17844
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtcagacacgacacgtgtc 85  Q
    ||||||||||| || || ||| |||| |||||||| ||||||||||||||| |||||    
T  17788 agaaaatcacacaactcggtgtaattgtatgtgtcggtgtcagacacgacatgtgtc 17844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 9788 - 9748
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtc 69  Q
    |||||||||| |||||||||| ||||||||||||| |||||    
T  9788 agaaaatcacttaattcagtgtaattatatgtgtcggtgtc 9748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 135353 - 135313
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtc 69  Q
    ||||||||||||||||| ||| ||||||||||||| |||||    
T  135353 agaaaatcacataattctgtgtaattatatgtgtcggtgtc 135313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 263413 - 263373
Alignment:
Q  29 agaaaatcacataattcagtgcaattatatgtgtcagtgtc 69  Q
    |||||| |||||||||||||| ||||||| |||||||||||    
T  263413 agaaaaccacataattcagtgtaattataagtgtcagtgtc 263373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University