View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0942_low_144 (Length: 241)
Name: NF0942_low_144
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0942_low_144 |
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Alignment Details
Target: chr3 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 14548412 - 14548525
Alignment:
| Q |
1 |
caagcttcatggtttaaatgctcaatggagtgaagagaagaagcaaagttacataaggcatgcaattcgggagtataatattcacaagaccttgatccat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14548412 |
caagcttcatggtttaaatgctcaatggagtgaagagaagaagcaaagttacataaggcatgcaattcgggagtataatattcacaagaccttgatccat |
14548511 |
T |
|
| Q |
101 |
cgtcatattattcg |
114 |
Q |
| |
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||||||||| |||| |
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| T |
14548512 |
cgtcatattgttcg |
14548525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 106; Significance: 4e-53; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 37525889 - 37526002
Alignment:
| Q |
1 |
caagcttcatggtttaaatgctcaatggagtgaagagaagaagcaaagttacataaggcatgcaattcgggagtataatattcacaagaccttgatccat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
37525889 |
caagcttcatggtttaaatgctcaatggagtgaagagaagaagcaaagttacataaggcatgcaattcgggagtataatattcacaagaccttggtccat |
37525988 |
T |
|
| Q |
101 |
cgtcatattattcg |
114 |
Q |
| |
|
||||||||| |||| |
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|
| T |
37525989 |
cgtcatattgttcg |
37526002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 37588050 - 37588163
Alignment:
| Q |
1 |
caagcttcatggtttaaatgctcaatggagtgaagagaagaagcaaagttacataaggcatgcaattcgggagtataatattcacaagaccttgatccat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
37588050 |
caagcttcatggtttaaatgctcaatggagtgaagagaagaagcaaagttacataaggcatgcaattcgggagtataatattcacaagaccttggtccat |
37588149 |
T |
|
| Q |
101 |
cgtcatattattcg |
114 |
Q |
| |
|
||||||||| |||| |
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|
| T |
37588150 |
cgtcatattgttcg |
37588163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 37690326 - 37690439
Alignment:
| Q |
1 |
caagcttcatggtttaaatgctcaatggagtgaagagaagaagcaaagttacataaggcatgcaattcgggagtataatattcacaagaccttgatccat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
37690326 |
caagcttcatggtttaaatgctcaatggagtgaagagaagaagcaaagttacataaggcatgcaattcgggagtataatattcacaagaccttggtccat |
37690425 |
T |
|
| Q |
101 |
cgtcatattattcg |
114 |
Q |
| |
|
||||||||| |||| |
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|
| T |
37690426 |
cgtcatattgttcg |
37690439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 37618624 - 37618737
Alignment:
| Q |
1 |
caagcttcatggtttaaatgctcaatggagtgaagagaagaagcaaagttacataaggcatgcaattcgggagtataatattcacaagaccttgatccat |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
37618624 |
caagcttcatggtgtaaatgctcaatggagtgaagagaagaagcaaagttacataaggcatgcaattcgggagtataatattcacaagaccttggttcat |
37618723 |
T |
|
| Q |
101 |
cgtcatattattcg |
114 |
Q |
| |
|
||||||||| |||| |
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|
| T |
37618724 |
cgtcatattgttcg |
37618737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 37794392 - 37794505
Alignment:
| Q |
1 |
caagcttcatggtttaaatgctcaatggagtgaagagaagaagcaaagttacataaggcatgcaattcgggagtataatattcacaagaccttgatccat |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
37794392 |
caagcttcatggtgtaaatgctcaatggagtgaagagaagaagcaaagttacataaggcatgcaattcgggagtataatattcacaagaccttggttcat |
37794491 |
T |
|
| Q |
101 |
cgtcatattattcg |
114 |
Q |
| |
|
||||||||| |||| |
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|
| T |
37794492 |
cgtcatattgttcg |
37794505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 37787645 - 37787746
Alignment:
| Q |
1 |
caagcttcatggtttaaatgctcaatggagtgaagagaagaagcaaagttacataaggcatgcaattcgggagtataatattcacaagaccttgatccat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||| |||| | ||||||||||||||||| ||||| |
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| T |
37787645 |
caagcttcatggtttaaatgctcaatgggctgaagagaagaagctaagttacatgaggcatgcaattcgagagtgtcatattcacaagaccttggtccat |
37787744 |
T |
|
| Q |
101 |
cg |
102 |
Q |
| |
|
|| |
|
|
| T |
37787745 |
cg |
37787746 |
T |
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