View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0942_low_16 (Length: 557)
Name: NF0942_low_16
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0942_low_16 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 18 - 547
Target Start/End: Original strand, 27776866 - 27777390
Alignment:
| Q |
18 |
atctgatgataattgtgaagaatttatgtttgagtgttttgtacagaaggaagggtatttgtcattaactttcatgtgttgaaacaccccnnnnnnntgg |
117 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||| | || |||| ||| || ||||||| ||||||||||| |||||||||||||||| ||| |
|
|
| T |
27776866 |
atctgatgacaattgagaagaatttatgtttgagtctattttacaaaagaaatggtattttgcattaactttcttgtgttgaaacaccccaacaaaatgg |
27776965 |
T |
|
| Q |
118 |
ggtggttgaaaggaagtatcaacatattctcaatgtgtcaaggaccttaatgtttcattatcatattcctatctctttttgtgcttatgctatttcacat |
217 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
27776966 |
ggtggttgaaaggaagcatcaacatattctcaatgtgtcaaggaccttaatatttcaatatcagattcctatctctttttgttcttatgctatttcacat |
27777065 |
T |
|
| Q |
218 |
gatgatgttcagccaattaaatttttaccatctttgaaattgaacaatgaatcaccttattacatcctttacagaaaaacattcatgatatatctcattt |
317 |
Q |
| |
|
|||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
27777066 |
gatg---ttcaaccaattaaatttttaccatcttc-aaattgaacaatgaatcaccttattacatcctttacaaaaaaa-attcatgatatatctcattt |
27777160 |
T |
|
| Q |
318 |
caaggtctttggatctttatgctttgcttctcatagaaagaaatttcaggctagagctaaaaagtgtgttttccttggccataaagatgtaaaagggttc |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27777161 |
caaggtctttggatctttatgctttgcttctcatagaaagaaatttcaggctagagctaaaaagtgtgttttccttggccataaagatgtaaaagggttc |
27777260 |
T |
|
| Q |
418 |
gttttatttgatcttattaagagagaattcttttttatctagacatgtgatatttttatgaaaacacatttccttttaatttacttctttatttgcgtcc |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27777261 |
gttttatttgatcttattaagagagaattcttttttatctagacatgtgatatttttatgaaaacacatttccttttaatttacttctttatttgcgtcc |
27777360 |
T |
|
| Q |
518 |
tccaattcatctactcttacctttcctatg |
547 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
27777361 |
tccaattcatctactcttacctttcctatg |
27777390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University