View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0942_low_17 (Length: 538)
Name: NF0942_low_17
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0942_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 419; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 97 - 527
Target Start/End: Original strand, 7623235 - 7623665
Alignment:
| Q |
97 |
gttgaattatccatgtggtcatcaatgacttgttggtatatcaaatccaactccttgaactttttatcaagcctcccaagagttcctttgattctatcaa |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7623235 |
gttgaattatccatgtggtcatcaatgacttgttggtatatcaaatccaactccttgaactttttatcaagcctcccaagagttcctttgattctatcaa |
7623334 |
T |
|
| Q |
197 |
cccaacctaataatggaaaatgatcagaaaagtaaaactcagttaacaaagcctgtgcttcattaagcaaaacttgcaatctacttcttctttctccact |
296 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7623335 |
cccaacctaacaatggaaaatgatcagaaaagtaaaactcagttaacaaagcctgtgcttcattaagcaaaacttgcaatctacttcttctttctccact |
7623434 |
T |
|
| Q |
297 |
tcccaattcaacttcttcctcataatcaaaaacatattttttcccaaaagctatcttacatataattgcatttgtgaaagatatcaatatttcactcaag |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7623435 |
tcccaattcaacttcttcctcataatcaaaaacatattttttcccaaaagctatcttacatataattgcatttgtgaaagatatcaatatttcactcaag |
7623534 |
T |
|
| Q |
397 |
tttacacctttttcatcaccatcattctgtgacagcttttgaatcaattcagccacttcattttctctaataggcctaaaagaatgtagacttttagggc |
496 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7623535 |
tttacacctttttcatcaccatcatactgtgacagcttttgaatcaattcagccacttcattttctctaataggcctaaaagaatgtagacttttagggc |
7623634 |
T |
|
| Q |
497 |
taaaaaggtgaagagcacaaagctttttcat |
527 |
Q |
| |
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|||| |||||||||||||||||||||||||| |
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| T |
7623635 |
taaagaggtgaagagcacaaagctttttcat |
7623665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 99 - 530
Target Start/End: Original strand, 7629546 - 7629977
Alignment:
| Q |
99 |
tgaattatccatgtggtcatcaatgacttgttggtatatcaaatccaactccttgaactttttatcaagcctcccaagagttcctttgattctatcaacc |
198 |
Q |
| |
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||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||| | |
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| T |
7629546 |
tgaataatccatgtggtcatcaataactctttggtatatcaaatccaactccttgaacgttttatcaagcctcccaagtgttcctttgactctatcaatc |
7629645 |
T |
|
| Q |
199 |
caacctaataatggaaaatgatcagaaaagtaaaactcagttaacaaagcctgtgcttcattaagcaaaacttgcaatctacttcttctttctccacttc |
298 |
Q |
| |
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||||| || |||||||||| ||| ||||||||||| |||| |||||||| || |||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
7629646 |
caaccaaacaatggaaaattatctgaaaagtaaaattcagccaacaaagcttgagcttcattaagcaaaacttgcaatctacttctcctttgtccacttc |
7629745 |
T |
|
| Q |
299 |
ccaattcaacttcttcctcataatcaaaaacatattttttcccaaaagctatcttacatataattgcatttgtgaaagatatcaatatttcactcaagtt |
398 |
Q |
| |
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||||||||||| |||| ||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||| |
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| T |
7629746 |
ccaattcaactccttcttcataatcacaaacatatgttttcccaaaagctatcttacatataattgtatttgtgagagacatcaatatttcactcaagtt |
7629845 |
T |
|
| Q |
399 |
tacacctttttcatcaccatcattctgtgacagcttttgaatcaattcagccacttcattttctctaataggcctaaaagaatgtagacttttagggcta |
498 |
Q |
| |
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||||||||||||||||| ||| || |||| |||||||||||||| ||||||||||||||||||| |||||||||||||| || || || |||| |
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| T |
7629846 |
cgcacctttttcatcaccaccatattgcgacaacttttgaatcaattgggccacttcattttctctaacgggcctaaaagaatgggcacgttgagagcta |
7629945 |
T |
|
| Q |
499 |
aaaaggtgaagagcacaaagctttttcatctc |
530 |
Q |
| |
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|| |||||| || ||||||| ||| ||||||| |
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|
| T |
7629946 |
aagaggtgatgaacacaaagttttctcatctc |
7629977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 99 - 482
Target Start/End: Original strand, 7636329 - 7636712
Alignment:
| Q |
99 |
tgaattatccatgtggtcatcaatgacttgttggtatatcaaatccaactccttgaactttttatcaagcctcccaagagttcctttgattctatcaacc |
198 |
Q |
| |
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|||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| | |
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| T |
7636329 |
tgaattatccatgtggtcatcaataactctttggtatatcaaatccaactccttgaatgttttatcaagcctcccaagagttcctttgactctatcaatc |
7636428 |
T |
|
| Q |
199 |
caacctaataatggaaaatgatcagaaaagtaaaactcagttaacaaagcctgtgcttcattaagcaaaacttgcaatctacttcttctttctccacttc |
298 |
Q |
| |
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||||| || |||||||||| ||| ||||||||||| |||| |||||||| || |||||||||||||||||||||||||||||||| ||| |||||||| |
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| T |
7636429 |
caacccaacaatggaaaattatctgaaaagtaaaattcagccaacaaagcttgagcttcattaagcaaaacttgcaatctacttctcttttgtccacttc |
7636528 |
T |
|
| Q |
299 |
ccaattcaacttcttcctcataatcaaaaacatattttttcccaaaagctatcttacatataattgcatttgtgaaagatatcaatatttcactcaagtt |
398 |
Q |
| |
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|||||||||||||||| ||||||||| |||||||| |||| ||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||| |
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| T |
7636529 |
ccaattcaacttcttcttcataatcacaaacatatgtttttccaaaagctatcttacatataattgtatttgtgagagacatcaatatttcactcaagtt |
7636628 |
T |
|
| Q |
399 |
tacacctttttcatcaccatcattctgtgacagcttttgaatcaattcagccacttcattttctctaataggcctaaaagaatg |
482 |
Q |
| |
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||||||||||||||||| ||| || |||| |||||||||||||| ||||||||||||||||||| |||||||||||||| |
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| T |
7636629 |
cgcacctttttcatcaccaccatattgcgacaacttttgaatcaattgggccacttcattttctctaacgggcctaaaagaatg |
7636712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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