View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0942_low_18 (Length: 533)

Name: NF0942_low_18
Description: NF0942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0942_low_18
NF0942_low_18
[»] chr2 (28 HSPs)
chr2 (88-505)||(16576071-16576498)
chr2 (225-457)||(38576810-38577041)
chr2 (183-368)||(16863386-16863570)
chr2 (183-408)||(35370327-35370552)
chr2 (213-331)||(2248934-2249052)
chr2 (257-380)||(9050074-9050197)
chr2 (271-380)||(28282667-28282776)
chr2 (268-505)||(9050119-9050356)
chr2 (245-497)||(34176695-34176948)
chr2 (292-368)||(17606589-17606665)
chr2 (221-316)||(34176610-34176705)
chr2 (260-355)||(38333818-38333913)
chr2 (257-380)||(38576726-38576840)
chr2 (430-505)||(38576931-38577006)
chr2 (248-393)||(25606360-25606506)
chr2 (289-329)||(2909857-2909897)
chr2 (429-505)||(16863461-16863537)
chr2 (257-336)||(13712743-13712822)
chr2 (434-505)||(35371121-35371192)
chr2 (429-494)||(35370403-35370468)
chr2 (384-498)||(35373664-35373781)
chr2 (275-328)||(35373728-35373781)
chr2 (221-346)||(13712902-13713029)
chr2 (441-505)||(28282667-28282731)
chr2 (260-336)||(35371117-35371193)
chr2 (299-362)||(13784444-13784507)
chr2 (242-306)||(40374123-40374184)
chr2 (440-504)||(2248931-2248995)
[»] chr5 (34 HSPs)
chr5 (257-397)||(2243248-2243388)
chr5 (227-505)||(40483655-40483931)
chr5 (257-379)||(973114-973236)
chr5 (395-505)||(2243310-2243425)
chr5 (224-370)||(39808191-39808337)
chr5 (225-500)||(22780174-22780448)
chr5 (226-376)||(17736852-17737001)
chr5 (295-405)||(17739907-17740018)
chr5 (257-370)||(17736713-17736826)
chr5 (247-383)||(41264366-41264503)
chr5 (268-380)||(7215417-7215529)
chr5 (226-308)||(972801-972883)
chr5 (442-504)||(22780339-22780401)
chr5 (257-401)||(7215224-7215368)
chr5 (261-378)||(41264536-41264653)
chr5 (271-355)||(2822597-2822681)
chr5 (253-329)||(14138544-14138620)
chr5 (284-344)||(40483880-40483940)
chr5 (242-309)||(37077641-37077707)
chr5 (244-329)||(972874-972959)
chr5 (257-369)||(7982214-7982327)
chr5 (257-330)||(37077763-37077836)
chr5 (282-397)||(5205469-5205585)
chr5 (397-505)||(17736748-17736856)
chr5 (272-323)||(39730312-39730363)
chr5 (285-402)||(26105266-26105383)
chr5 (274-327)||(7113616-7113669)
chr5 (440-505)||(7215462-7215527)
chr5 (286-331)||(26105493-26105538)
chr5 (444-505)||(41264393-41264454)
chr5 (212-327)||(7982382-7982497)
chr5 (441-505)||(7215291-7215354)
chr5 (429-505)||(14138550-14138626)
chr5 (424-500)||(37077760-37077836)
[»] chr7 (31 HSPs)
chr7 (221-460)||(27651379-27651616)
chr7 (257-409)||(23944079-23944231)
chr7 (260-503)||(34891371-34891612)
chr7 (257-331)||(34891536-34891610)
chr7 (257-361)||(32138854-32138958)
chr7 (183-331)||(43208674-43208823)
chr7 (363-505)||(32138880-32139024)
chr7 (286-407)||(32962311-32962434)
chr7 (222-312)||(4674876-4674966)
chr7 (250-328)||(33192336-33192414)
chr7 (384-505)||(23944037-23944157)
chr7 (311-406)||(31152823-31152919)
chr7 (212-394)||(757877-758062)
chr7 (442-505)||(27651504-27651566)
chr7 (257-406)||(31171384-31171535)
chr7 (257-380)||(42012804-42012926)
chr7 (276-329)||(3191567-3191620)
chr7 (287-372)||(33362369-33362454)
chr7 (271-407)||(44754928-44755065)
chr7 (274-391)||(22593510-22593624)
chr7 (447-497)||(8354394-8354444)
chr7 (277-327)||(8354394-8354444)
chr7 (183-280)||(32988567-32988665)
chr7 (257-306)||(29152350-29152399)
chr7 (257-309)||(8900670-8900722)
chr7 (257-476)||(8900673-8900892)
chr7 (227-324)||(29152493-29152587)
chr7 (446-499)||(3191567-3191620)
chr7 (270-322)||(31152738-31152790)
chr7 (289-396)||(42012670-42012775)
chr7 (441-505)||(44754928-44754992)
[»] chr1 (40 HSPs)
chr1 (223-407)||(38839582-38839765)
chr1 (223-505)||(34601435-34601715)
chr1 (257-413)||(49897873-49898030)
chr1 (257-398)||(3232131-3232273)
chr1 (295-505)||(67967-68178)
chr1 (183-380)||(52432590-52432786)
chr1 (257-365)||(68100-68208)
chr1 (282-380)||(3367810-3367908)
chr1 (268-407)||(5500739-5500878)
chr1 (257-331)||(46080974-46081048)
chr1 (284-376)||(7104295-7104387)
chr1 (429-505)||(52432666-52432742)
chr1 (257-372)||(52432836-52432951)
chr1 (242-505)||(3231946-3232209)
chr1 (422-507)||(46080969-46081054)
chr1 (242-369)||(15321029-15321156)
chr1 (314-397)||(41148568-41148651)
chr1 (242-312)||(2534433-2534503)
chr1 (286-403)||(34601366-34601484)
chr1 (257-369)||(44330466-44330578)
chr1 (214-290)||(45136757-45136833)
chr1 (257-370)||(24874601-24874715)
chr1 (257-322)||(10775166-10775231)
chr1 (253-354)||(35956982-35957083)
chr1 (226-279)||(42819471-42819524)
chr1 (274-362)||(10775037-10775125)
chr1 (292-380)||(12145005-12145093)
chr1 (257-355)||(24873768-24873867)
chr1 (431-505)||(5500812-5500885)
chr1 (445-499)||(38839661-38839715)
chr1 (257-335)||(42819624-42819702)
chr1 (448-505)||(3367806-3367863)
chr1 (423-492)||(10775162-10775231)
chr1 (440-505)||(49897886-49897951)
chr1 (423-505)||(44330462-44330544)
chr1 (226-316)||(46080821-46080910)
chr1 (275-336)||(7749024-7749085)
chr1 (242-290)||(3367746-3367794)
chr1 (299-355)||(7104215-7104271)
chr1 (445-505)||(7749024-7749084)
[»] chr6 (14 HSPs)
chr6 (270-404)||(32047190-32047325)
chr6 (257-407)||(32342603-32342753)
chr6 (242-499)||(20067904-20068160)
chr6 (303-407)||(32047039-32047144)
chr6 (348-500)||(32342523-32342676)
chr6 (436-497)||(32047186-32047247)
chr6 (268-327)||(23577165-23577224)
chr6 (274-403)||(7556040-7556171)
chr6 (243-303)||(20206481-20206541)
chr6 (243-303)||(22100504-22100564)
chr6 (346-457)||(26236689-26236799)
chr6 (444-499)||(7556116-7556171)
chr6 (440-497)||(23577167-23577224)
chr6 (223-279)||(32046954-32047010)
[»] chr4 (15 HSPs)
chr4 (287-499)||(25062352-25062565)
chr4 (257-406)||(22050855-22051005)
chr4 (257-330)||(15131574-15131647)
chr4 (233-359)||(20512797-20512923)
chr4 (257-380)||(25062493-25062616)
chr4 (435-500)||(15131574-15131639)
chr4 (282-331)||(22050725-22050774)
chr4 (257-329)||(20512668-20512740)
chr4 (446-502)||(22050719-22050775)
chr4 (435-503)||(54000043-54000111)
chr4 (260-323)||(4115389-4115452)
chr4 (268-327)||(25234202-25234261)
chr4 (435-497)||(25234202-25234264)
chr4 (257-331)||(54000045-54000119)
chr4 (246-306)||(44591971-44592031)
[»] chr8 (27 HSPs)
chr8 (257-407)||(29969101-29969252)
chr8 (226-413)||(7405477-7405661)
chr8 (226-329)||(34695801-34695904)
chr8 (257-359)||(35574610-35574712)
chr8 (229-359)||(37010315-37010445)
chr8 (254-505)||(35574634-35574884)
chr8 (305-505)||(32166629-32166825)
chr8 (202-364)||(7590280-7590442)
chr8 (240-344)||(6630524-6630628)
chr8 (257-371)||(32166593-32166707)
chr8 (259-336)||(12736059-12736136)
chr8 (299-362)||(29093581-29093644)
chr8 (282-402)||(6630308-6630429)
chr8 (213-285)||(39280912-39280984)
chr8 (183-404)||(12782311-12782527)
chr8 (282-402)||(6803868-6803989)
chr8 (422-505)||(12736052-12736135)
chr8 (242-315)||(30547336-30547409)
chr8 (440-505)||(37010339-37010404)
chr8 (417-497)||(29969091-29969170)
chr8 (223-327)||(31475009-31475111)
chr8 (434-505)||(6630533-6630604)
chr8 (470-505)||(29093582-29093617)
chr8 (270-324)||(33897753-33897807)
chr8 (224-503)||(33897539-33897816)
chr8 (445-505)||(7405552-7405612)
chr8 (304-380)||(26086801-26086876)
[»] chr3 (21 HSPs)
chr3 (257-401)||(39341202-39341347)
chr3 (302-449)||(2562969-2563115)
chr3 (223-407)||(7938035-7938220)
chr3 (257-408)||(54437809-54437961)
chr3 (228-505)||(34761947-34762222)
chr3 (221-505)||(54437604-54437887)
chr3 (242-363)||(13283806-13283927)
chr3 (272-380)||(20519245-20519353)
chr3 (212-306)||(7641806-7641900)
chr3 (253-369)||(48646411-48646526)
chr3 (300-402)||(51260553-51260654)
chr3 (183-331)||(46303299-46303447)
chr3 (242-322)||(21570356-21570436)
chr3 (259-327)||(42091793-42091861)
chr3 (242-505)||(20519290-20519556)
chr3 (242-321)||(6138487-6138566)
chr3 (440-503)||(39341215-39341278)
chr3 (275-379)||(45228277-45228378)
chr3 (429-505)||(48646417-48646492)
chr3 (333-497)||(42091793-42091955)
chr3 (257-339)||(34761943-34762025)
[»] scaffold0136 (1 HSPs)
scaffold0136 (290-394)||(36907-37012)
[»] scaffold1743 (1 HSPs)
scaffold1743 (242-324)||(772-853)
[»] scaffold0564 (3 HSPs)
scaffold0564 (183-308)||(5456-5582)
scaffold0564 (464-505)||(5293-5334)
scaffold0564 (293-330)||(5298-5335)


Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 88 - 505
Target Start/End: Original strand, 16576071 - 16576498
Alignment:
Q  88 attctctatagttacgtataaaagatatttggttcacaccaaaaatatgt-----------ttaagaagaaaaataagtgaccaacttcccatgtagata 176  Q
    |||||||||||||  | |||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||    
T  16576071 attctctatagttgtgcataaaagatatttggttcacaccaaaaatatgtttaagacatgtttaagaagaaaaataagtgaccaacttcccatgtagata 16576170  T
Q  177 atgatattttctacattacctctagatgaattggcgtaatttgcccctatcaaagaaaaattttcttttcttcatctttattcttacaattagttaccat 276  Q
    |||||||||||||||||| |  ||||| ||||||||||||||  |||||||||||||||||| ||||||||||| |||| |||||||||| | |||||||    
T  16576171 atgatattttctacattatccttagatcaattggcgtaatttagccctatcaaagaaaaattatcttttcttcaccttttttcttacaatcaattaccat 16576270  T
Q  277 tttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattagaggtaa 376  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  16576271 tttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattaggggtaa 16576370  T
Q  377 attaacccaattcatcaaggggtaatgtaggccccacggatagagttttttccttataatcatttaccattttcatctcaagaacaacaaacatcttcat 476  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||| ||||||||| |||| ||||||||||||||||||    
T  16576371 attaacccaattcatcaaggggtaacgtaggccccacggatagagtttttt-cttacaatcatttatcattttcatttcaaaaacaacaaacatcttcat 16576469  T
Q  477 atccttcattcaacatgtgatctccatct 505  Q
    |||||||||| ||||||  ||||||||||    
T  16576470 atccttcatttaacatgcaatctccatct 16576498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 225 - 457
Target Start/End: Complemental strand, 38577041 - 38576810
Alignment:
Q  225 atcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgt 324  Q
    ||||||||||||| |  |||||||||| |||||| ||| ||| ||||||||||||| ||| |||||||| ||| ||||||||||| ||||||||||||||    
T  38577041 atcaaagaaaaatctcattttcttcatatttatttttataatcagttaccattttcatctaaagaacattaaagttcttcatctctttcattcaacatgt 38576942  T
Q  325 gatctccttctcattcgttccagaatcgaatcatacttatcattagaggtaaattaacccaattcatcaaggggtaatgtaggccccacggatagagttt 424  Q
    ||| ||| |||| ||||| ||| |||| ||||||| || |||||||  |||||||| |||||||||| ||||||||||||||||| ||  |||| || ||    
T  38576941 gatttccatctctttcgtaccataatcaaatcatatttgtcattaggagtaaattaccccaattcataaaggggtaatgtaggcctcatcgata-aggtt 38576843  T
Q  425 tttccttataatcatttaccattttcatctcaa 457  Q
    ||| |||| ||||| ||||||||||||||||||    
T  38576842 ttttcttacaatcagttaccattttcatctcaa 38576810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 183 - 368
Target Start/End: Original strand, 16863386 - 16863570
Alignment:
Q  183 ttttctacattacctctagatgaattggcgtaatttgcccctatcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcct 282  Q
    |||||||||||||| |   ||||||||| |||||||  || |||||||||||||||   |||||||| |||||||||||||||| ||||||||||||| |    
T  16863386 ttttctacattaccccaccatgaattggggtaatttatccatatcaaagaaaaattcctttttcttc-tctttattcttacaatcagttaccattttcat 16863484  T
Q  283 ctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcatt 368  Q
    ||||||||||||||| |||||||||| ||| |||||| ||||||||| | |||| ||||||  ||||||||||| ||||| |||||    
T  16863485 ctcaagaacatcaaatttcttcatcttctttattcaatatgtgatctacatctccttcgttatagaatcgaatcctacttgtcatt 16863570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 183 - 408
Target Start/End: Original strand, 35370327 - 35370552
Alignment:
Q  183 ttttctacattacctctagatgaattggc-gtaatttgcccctatcaaagaaaaattttcttttcttcatctttat--tcttacaattagttaccatttt 279  Q
    |||||||||||||| || |||||||| |  ||||||  || |||||||||||||||   ||||||||||||||||   ||||||||| ||||||||||||    
T  35370327 ttttctacattaccccttgatgaattagtagtaattgaccactatcaaagaaaaat---cttttcttcatctttacgatcttacaatcagttaccatttt 35370423  T
Q  280 cctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattagaggtaaatt 379  Q
      ||||||||| | ||||||||||| ||||||||||||||||||| ||  || |||||||  |||||| |||||| ||||||| |||||||  | |||||    
T  35370424 aatctcaagaataccaaacttcttcgtctccttcattcaacatgtaatacccatctcatttattccag-atcgaaacatacttgtcattaggagcaaatt 35370522  T
Q  380 aacc-caattcatcaaggggtaatgtaggc 408  Q
    | || ||||||||||| |||||||||||||    
T  35370523 accctcaattcatcaacgggtaatgtaggc 35370552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 213 - 331
Target Start/End: Complemental strand, 2249052 - 2248934
Alignment:
Q  213 taatttgcccctatcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctcctt 312  Q
    |||||| || |||||||||||||||  | ||||||||||||||||||||| ||||||||||||||||| |||||| ||||| |||||||||||||| |||    
T  2249052 taatttacctctatcaaagaaaaatcatattttcttcatctttattcttagaattagttaccattttcatctcaaaaacattaaacttcttcatcttctt 2248953  T
Q  313 cattcaacatgtgatctcc 331  Q
     ||| |||||||| |||||    
T  2248952 aattgaacatgtggtctcc 2248934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 257 - 380
Target Start/End: Complemental strand, 9050197 - 9050074
Alignment:
Q  257 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatc 356  Q
    ||||||| || ||||||||||||| | | ||||||| ||||||||||||||||| ||||||||||| |||||||| ||||||||||| || |||||||||    
T  9050197 ttcttacgatcagttaccattttcatatgaagaacaacaaacttcttcatctccatcattcaacatatgatctccatctcattcgttacaaaatcgaatc 9050098  T
Q  357 atacttatcattagaggtaaatta 380  Q
    || ||| ||||||  |||||||||    
T  9050097 atgcttgtcattaagggtaaatta 9050074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 271 - 380
Target Start/End: Original strand, 28282667 - 28282776
Alignment:
Q  271 taccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattag 370  Q
    |||||||||| |||| | ||||||||||||||| |||| |||||||||| ||||||||||| |||||||||||||| |||| |||  ||||| | |||||    
T  28282667 taccattttcatctccataacatcaaacttctttatctgcttcattcaatatgtgatctccatctcattcgttccataatcaaattttacttgttattag 28282766  T
Q  371 aggtaaatta 380  Q
     |||||||||    
T  28282767 gggtaaatta 28282776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 268 - 505
Target Start/End: Complemental strand, 9050356 - 9050119
Alignment:
Q  268 agttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcat 367  Q
    |||| |||||||| ||| || || ||||| | | |||||||| |||||| ||||| |||| | | |||  || ||| || ||||||||| ||||  ||||    
T  9050356 agttgccattttcatcttaaaaatatcaagcattttcatctctttcatttaacatttgatttacatcttctttgtttcataatcgaatcctactagtcat 9050257  T
Q  368 tagaggtaaattaacc-caattcatcaaggggtaatgtaggccccacggatagagttttttccttataatcatttaccattttcatctcaagaacaacaa 466  Q
    ||||||||||||| || |||||||||||| | |||||| || | |    ||| | ||||||| |||  |||| ||||||||||||| | |||||||||||    
T  9050256 tagaggtaaattaccctcaattcatcaagagataatgttggtctcgtcaatataattttttc-ttacgatcagttaccattttcatatgaagaacaacaa 9050158  T
Q  467 acatcttcatatccttcattcaacatgtgatctccatct 505  Q
    || ||||||| ||| ||||||||||| ||||||||||||    
T  9050157 acttcttcatctccatcattcaacatatgatctccatct 9050119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 245 - 497
Target Start/End: Original strand, 34176695 - 34176948
Alignment:
Q  245 tcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttc 344  Q
    ||||| || ||| ||||||||| |||||| ||| ||  || | |||||||||| |||||||||||||||||| ||||| |||||| | |||| ||||||     
T  34176695 tcttcttcattactcttacaatcagttactattatcaccttaggaacatcaaaattcttcatctccttcatttaacatatgatcttcatctctttcgttt 34176794  T
Q  345 cagaatcgaatcatacttatcattagaggtaaatta-acccaattcatcaaggggtaatgtaggccccacggatagagttttt--tccttataatcattt 441  Q
    || |||||||||||| || |||||||   | |||||  ||||||||||||  ||  ||| |||||  ||  |||||  |||||  |||||| ||| | ||    
T  34176795 cataatcgaatcatatttttcattaggattgaattatccccaattcatcattggaaaatctaggcatcattgataggattttttctccttacaattagtt 34176894  T
Q  442 accattttcatctcaagaacaacaaacatcttcatatccttcattcaacatgtgat 497  Q
    ||||||||||||||||||||  ||||| | | ||| | ||||||||||||||||||    
T  34176895 accattttcatctcaagaac--caaacttgtacatcttcttcattcaacatgtgat 34176948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 292 - 368
Target Start/End: Complemental strand, 17606665 - 17606589
Alignment:
Q  292 atcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcatt 368  Q
    ||||||||| |||||||||||||||||||||||||| ||| |||||||||||| |||||| |||| ||||| |||||    
T  17606665 atcaaacttgttcatctccttcattcaacatgtgatatccatctcattcgttcaagaatcaaatcctacttgtcatt 17606589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 221 - 316
Target Start/End: Original strand, 34176610 - 34176705
Alignment:
Q  221 ccctatcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcatt 316  Q
    |||||| | |||| |||| | |||||||||||||||||  |||||| ||||||||||||| ||| ||||| ||||||||||||||||| |||||||    
T  34176610 ccctattagagaacaattatattttcttcatctttatttctacaatcagttaccattttcatcttaagaatatcaaacttcttcatcttcttcatt 34176705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 260 - 355
Target Start/End: Complemental strand, 38333913 - 38333818
Alignment:
Q  260 ttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaat 355  Q
    |||||||||||||| |||||| ||||||||||||| |||||||| ||||| ||| |||||| ||| |||| | |||  ||||||| ||||||||||    
T  38333913 ttacaattagttactattttcatctcaagaacatctaacttcttaatctctttcgttcaacgtgtcatcttcatctttttcgttctagaatcgaat 38333818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 257 - 380
Target Start/End: Complemental strand, 38576840 - 38576726
Alignment:
Q  257 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatc 356  Q
    |||||||||| ||||||||||||| |||||| |  |||||||||||||||         |||||||||| ||||| | || ||| ||||| |||||||||    
T  38576840 ttcttacaatcagttaccattttcatctcaatataatcaaacttcttcat---------tcaacatgtgttctccatatccttcattccaaaatcgaatc 38576750  T
Q  357 atacttatcattagaggtaaatta 380  Q
    |||||| ||||| |||||||||||    
T  38576749 atacttgtcatttgaggtaaatta 38576726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 430 - 505
Target Start/End: Complemental strand, 38577006 - 38576931
Alignment:
Q  430 ttataatcatttaccattttcatctcaagaacaacaaacatcttcatatccttcattcaacatgtgatctccatct 505  Q
    ||||||||| ||||||||||||||| |||||||  |||  ||||||| || ||||||||||||||||| |||||||    
T  38577006 ttataatcagttaccattttcatctaaagaacattaaagttcttcatctctttcattcaacatgtgatttccatct 38576931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 248 - 393
Target Start/End: Original strand, 25606360 - 25606506
Alignment:
Q  248 tcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccag 347  Q
    |||||||| |||||||| | |  || |||||||  ||| ||||||||||| ||||||||||  |||||||||||| |||| | | |||| |||||||||     
T  25606360 tcatcttttttcttacactcaaatatcattttcaactccagaacatcaaaattcttcatctgtttcattcaacatatgatatacatctccttcgttccat 25606459  T
Q  348 aatcgaatcatacttatcattagaggtaaattaacc-caattcatca 393  Q
    || |||||| ||||| | ||||  ||||||||| || ||||||||||    
T  25606460 aaacgaatcctacttgttattaagggtaaattaccctcaattcatca 25606506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 289 - 329
Target Start/End: Original strand, 2909857 - 2909897
Alignment:
Q  289 aacatcaaacttcttcatctccttcattcaacatgtgatct 329  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  2909857 aacatcaaacttcttcatctccttcattcaacatgtaatct 2909897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 429 - 505
Target Start/End: Original strand, 16863461 - 16863537
Alignment:
Q  429 cttataatcatttaccattttcatctcaagaacaacaaacatcttcatatccttcattcaacatgtgatctccatct 505  Q
    |||| ||||| ||||||||||||||||||||||| ||||  ||||||| | ||| |||||| ||||||||| |||||    
T  16863461 cttacaatcagttaccattttcatctcaagaacatcaaatttcttcatcttctttattcaatatgtgatctacatct 16863537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 257 - 336
Target Start/End: Complemental strand, 13712822 - 13712743
Alignment:
Q  257 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctc 336  Q
    ||||||| || ||||||||||| | ||| |||||||||||||||||| |||| ||| ||||||||| | |||||| ||||    
T  13712822 ttcttactatcagttaccatttccatcttaagaacatcaaacttctttatcttctttattcaacatctaatctccatctc 13712743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 434 - 505
Target Start/End: Original strand, 35371121 - 35371192
Alignment:
Q  434 aatcatttaccattttcatctcaagaacaacaaacatcttcatatccttcattcaacatgtgatctccatct 505  Q
    ||||||||||||||||||| ||||||||| ||||| ||||  |  |||||||| |||||||||| |||||||    
T  35371121 aatcatttaccattttcatatcaagaacatcaaacttctttgttaccttcatttaacatgtgatttccatct 35371192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 429 - 494
Target Start/End: Original strand, 35370403 - 35370468
Alignment:
Q  429 cttataatcatttaccattttcatctcaagaacaacaaacatcttcatatccttcattcaacatgt 494  Q
    |||| ||||| |||||||||| |||||||||| | ||||| ||||| | |||||||||||||||||    
T  35370403 cttacaatcagttaccattttaatctcaagaataccaaacttcttcgtctccttcattcaacatgt 35370468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 384 - 498
Target Start/End: Original strand, 35373664 - 35373781
Alignment:
Q  384 caattcatcaaggggtaatgtaggccccacggatagagttttttccttataatcatttacc----attttcatctcaagaacaacaaacatcttcatatc 479  Q
    |||||||| |||| |||||||||||  ||| |||| ||||||||  ||| ||||| |||||    |||||||||||||||||  ||||| ||||| |  |    
T  35373664 caattcattaaggagtaatgtaggcgtcaccgataaagtttttt-tttacaatcaattaccatttattttcatctcaagaacgtcaaacttcttctttac 35373762  T
Q  480 cttcattcaacatgtgatc 498  Q
    |||||||||||||||||||    
T  35373763 cttcattcaacatgtgatc 35373781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 275 - 328
Target Start/End: Original strand, 35373728 - 35373781
Alignment:
Q  275 attttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatc 328  Q
    |||||| |||||||||| |||||||||||| |  ||||||||||||||||||||    
T  35373728 attttcatctcaagaacgtcaaacttcttctttaccttcattcaacatgtgatc 35373781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 221 - 346
Target Start/End: Complemental strand, 13713029 - 13712902
Alignment:
Q  221 ccctatcaaagaaaaat--tttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattca 318  Q
    |||||||||||||||||  | | |||| || || ||||||| ||||||  |||||||||||  ||| || ||  |||||||| || |||||||||||| |    
T  13713029 ccctatcaaagaaaaatcatatattttttttatatttattcctacaatcggttaccatttttatcttaaaaatttcaaacttttttatctccttcattta 13712930  T
Q  319 acatgtgatctccttctcattcgttcca 346  Q
    ||||||||||| | |||| || ||||||    
T  13712929 acatgtgatctacatctctttggttcca 13712902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 441 - 505
Target Start/End: Original strand, 28282667 - 28282731
Alignment:
Q  441 taccattttcatctcaagaacaacaaacatcttcatatccttcattcaacatgtgatctccatct 505  Q
    ||||||||||||||| | |||| ||||| |||| || | |||||||||| |||||||||||||||    
T  28282667 taccattttcatctccataacatcaaacttctttatctgcttcattcaatatgtgatctccatct 28282731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 260 - 336
Target Start/End: Original strand, 35371117 - 35371193
Alignment:
Q  260 ttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctc 336  Q
    ||||||| | ||||||||||| | ||||||||||||||||||||  |  |||||||| |||||||||| ||| ||||    
T  35371117 ttacaatcatttaccattttcatatcaagaacatcaaacttctttgttaccttcatttaacatgtgatttccatctc 35371193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 362
Target Start/End: Original strand, 13784444 - 13784507
Alignment:
Q  299 ttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatactt 362  Q
    |||||||||||||||||||||||| |||| |   | |||||||||| ||||||||||| |||||    
T  13784444 ttcttcatctccttcattcaacatatgatatatatttcattcgttcaagaatcgaatcctactt 13784507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 242 - 306
Target Start/End: Complemental strand, 40374184 - 40374123
Alignment:
Q  242 ttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcat 306  Q
    ||||||||||||||||| ||| |||||||||||| |||| | ||   ||||||||||||||||||    
T  40374184 ttttcttcatctttattattaaaattagttaccactttcatatc---aacatcaaacttcttcat 40374123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 440 - 504
Target Start/End: Complemental strand, 2248995 - 2248931
Alignment:
Q  440 ttaccattttcatctcaagaacaacaaacatcttcatatccttcattcaacatgtgatctccatc 504  Q
    |||||||||||||||||| ||||  |||| ||||||| | ||| ||| |||||||| ||||||||    
T  2248995 ttaccattttcatctcaaaaacattaaacttcttcatcttcttaattgaacatgtggtctccatc 2248931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 8e-50; HSPs: 34)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 257 - 397
Target Start/End: Complemental strand, 2243388 - 2243248
Alignment:
Q  257 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatc 356  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||  ||||||| ||||||||||     
T  2243388 ttcttacaattagttaccattttcatctcaagaacatcaaacttcttcatatccttcattcaacatgtgatctccatcttcttcgttctagaatcgaatt 2243289  T
Q  357 atacttatcattagaggtaaattaacccaattcatcaaggg 397  Q
     ||||| ||||||||||||||||| ||||||||||||||||    
T  2243288 ttacttgtcattagaggtaaattaccccaattcatcaaggg 2243248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 227 - 505
Target Start/End: Original strand, 40483655 - 40483931
Alignment:
Q  227 caaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtga 326  Q
    |||||||||| ||  |||| |||||||||||||||| || || |||| |||||| ||| || |||||||||||||||||||||  |||||||||||||||    
T  40483655 caaagaaaaaattcatttttttcatctttattcttaaaaatatttactattttcatctaaa-aacatcaaacttcttcatctcactcattcaacatgtga 40483753  T
Q  327 tctccttctcattcgttccagaatcgaatcatacttatcattagaggtaaattaacc-caattcatcaaggggtaatgtaggccccacggatagagtttt 425  Q
    ||| | |||||||||||||| ||||||||||||||||||||| | ||||| ||| || |||||||||||| | |||  |||||| ||  ||||| |||||    
T  40483754 tcttcatctcattcgttccaaaatcgaatcatacttatcattgggggtaatttaccctcaattcatcaagagataacataggcctcatcgatag-gtttt 40483852  T
Q  426 ttccttataatcatttaccattttcatctcaagaacaacaaacatcttcatatccttcattcaacatgtgatctccatct 505  Q
    || | || ||||| || |||  || || ||||||||| | ||| ||||||| | ||| | ||||||||||||||||||||    
T  40483853 tt-cgtacaatcaattcccaaatttatatcaagaacatccaacttcttcatcttctttactcaacatgtgatctccatct 40483931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 257 - 379
Target Start/End: Original strand, 973114 - 973236
Alignment:
Q  257 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatc 356  Q
    |||||||||||||||| ||||||  |||||| ||||| ||| |||||||||||||| |||||||||||||||| | |||||||| || || ||| |||||    
T  973114 ttcttacaattagttatcatttttatctcaaaaacattaaatttcttcatctcctttattcaacatgtgatcttcatctcattcattacaaaattgaatc 973213  T
Q  357 atacttatcattagaggtaaatt 379  Q
    ||| ||||||||| | |||||||    
T  973214 atatttatcattaaaagtaaatt 973236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 395 - 505
Target Start/End: Complemental strand, 2243425 - 2243310
Alignment:
Q  395 ggggtaatgtaggccccacggatagagtt---ttttc--cttataatcatttaccattttcatctcaagaacaacaaacatcttcatatccttcattcaa 489  Q
    ||||||||||||||| |||  ||||||||   |||||  |||| ||| | ||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  2243425 ggggtaatgtaggcctcacctatagagttgttttttcttcttacaattagttaccattttcatctcaagaacatcaaacttcttcatatccttcattcaa 2243326  T
Q  490 catgtgatctccatct 505  Q
    ||||||||||||||||    
T  2243325 catgtgatctccatct 2243310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 224 - 370
Target Start/End: Complemental strand, 39808337 - 39808191
Alignment:
Q  224 tatcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatg 323  Q
    ||||||||||||||| |||||| ||||| |||||||||| ||  ||||| |||||||  || |||| |||||||||| ||||||||||||||| |||||     
T  39808337 tatcaaagaaaaattctcttttattcatatttattcttaaaacaagttatcattttcaccttaagaccatcaaactttttcatctccttcatttaacata 39808238  T
Q  324 tgatctccttctcattcgttccagaatcgaatcatacttatcattag 370  Q
    ||||||   |||| ||| ||| |||||||||||| |||| |||||||    
T  39808237 tgatctatgtctctttcattctagaatcgaatcacacttgtcattag 39808191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 225 - 500
Target Start/End: Complemental strand, 22780448 - 22780174
Alignment:
Q  225 atcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgt 324  Q
    ||||||||||||  |  ||||||| ||||||| | || |||| ||| ||||||||| |||||| ||||  |||||||||||| |||||||||||||||||    
T  22780448 atcaaagaaaaaactcattttcttaatctttactatttcaatgagtcaccattttcatctcaaaaacaataaacttcttcatatccttcattcaacatgt 22780349  T
Q  325 gatctccttctcattcgttccagaatcgaatcatacttatcattagaggtaaattaac-ccaattcatcaaggggtaatgtaggccccacggatagagtt 423  Q
    ||||| | || | ||||||  |||||| ||||||| || ||||||| | ||||||| | ||||||||||   |||||||| | ||  ||  | ||| |||    
T  22780348 gatcttcatccctttcgttttagaatcaaatcatagttgtcattagggataaattacctccaattcatcgttgggtaatgcatgcttcattggtag-gtt 22780250  T
Q  424 ttttccttataatcatttaccattttcatctcaagaacaacaaacatcttcatatccttcattcaacatgtgatctc 500  Q
    ||||  ||| ||||| |||||||||| || |||| |||| ||||| | ||||| | | |||||||||||||||||||    
T  22780249 tttt-attacaatcagttaccatttttatttcaataacatcaaactttttcatctacgtcattcaacatgtgatctc 22780174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 226 - 376
Target Start/End: Complemental strand, 17737001 - 17736852
Alignment:
Q  226 tcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtg 325  Q
    |||||||||||| || |||| ||||||||||| ||||||||   ||||||||||  ||| ||||| |||||| ||||| | || |||| |||||||| ||    
T  17737001 tcaaagaaaaatcttatttttttcatctttat-cttacaatcgattaccatttttatcttaagaatatcaaatttctttaccttcttccttcaacatatg 17736903  T
Q  326 atctccttctcattcgttccagaatcgaatcatacttatcattagaggtaa 376  Q
     | |||||||||||||||| | ||| ||||||||||| |||||||||||||    
T  17736902 gtttccttctcattcgttctacaatagaatcatacttgtcattagaggtaa 17736852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 295 - 405
Target Start/End: Original strand, 17739907 - 17740018
Alignment:
Q  295 aaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattagaggt-aaattaacccaattcatca 393  Q
    |||||||||||||| ||||||| |||||||||| | | |||| ||||||||||||||||||| ||||||| ||||| | | || || || ||||||||||    
T  17739907 aaacttcttcatcttcttcatttaacatgtgattttcatctccttcgttccagaatcgaatcctacttattattagggatgaatttcactcaattcatca 17740006  T
Q  394 aggggtaatgta 405  Q
    ||||||||||||    
T  17740007 aggggtaatgta 17740018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 257 - 370
Target Start/End: Complemental strand, 17736826 - 17736713
Alignment:
Q  257 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatc 356  Q
    |||||||||  | ||||||||||| |||||| || || |||||||||||||| ||||| |||||||||||||||  |||  ||||||| |||||||||||    
T  17736826 ttcttacaaccaattaccattttcatctcaataatattaaacttcttcatcttcttcactcaacatgtgatctctatcttcttcgttctagaatcgaatc 17736727  T
Q  357 atacttatcattag 370  Q
     ||||| |||||||    
T  17736726 gtacttgtcattag 17736713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 247 - 383
Target Start/End: Original strand, 41264366 - 41264503
Alignment:
Q  247 ttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgtt-cc 345  Q
    |||||||||||| | | ||| ||||  ||||||| |||||||||||| |||||| ||||| |  ||||||||||||||||||| | |||| ||||||  |    
T  41264366 ttcatctttattatgataatgagttgtcattttcatctcaagaacattaaactttttcatattgttcattcaacatgtgatcttcatctctttcgttatc 41264465  T
Q  346 agaatcgaatcatacttatcattagaggtaaattaacc 383  Q
    | |||||||||||| || | ||||||||||||||||||    
T  41264466 ataatcgaatcataattgttattagaggtaaattaacc 41264503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 268 - 380
Target Start/End: Complemental strand, 7215529 - 7215417
Alignment:
Q  268 agttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcat 367  Q
    |||||| |||||| | |||||||||| |||||| ||||| | |||||||||||||||||||| | |||| |||||||||||| || |||||| || | ||    
T  7215529 agttactattttcatatcaagaacattaaactttttcatattcttcattcaacatgtgatcttcatctctttcgttccagaaccgcatcatagttgttat 7215430  T
Q  368 tagaggtaaatta 380  Q
    |||| ||||||||    
T  7215429 tagatgtaaatta 7215417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 226 - 308
Target Start/End: Original strand, 972801 - 972883
Alignment:
Q  226 tcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatct 308  Q
    ||||||||||| ||  |||| ||| |||||||| ||| ||||||||| ||||||| |||||||||||||||||||||||||||    
T  972801 tcaaagaaaaaattcatttttttcctctttatttttaaaattagttatcattttcatctcaagaacatcaaacttcttcatct 972883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 442 - 504
Target Start/End: Complemental strand, 22780401 - 22780339
Alignment:
Q  442 accattttcatctcaagaacaacaaacatcttcatatccttcattcaacatgtgatctccatc 504  Q
    |||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||| ||||    
T  22780401 accattttcatctcaaaaacaataaacttcttcatatccttcattcaacatgtgatcttcatc 22780339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 257 - 401
Target Start/End: Complemental strand, 7215368 - 7215224
Alignment:
Q  257 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatc 356  Q
    |||||||||| |  |||||||||| ||||||||||||||||||||||  ||| ||||||| || ||||||||||| |||  ||| ||| | ||| |||||    
T  7215368 ttcttacaatcaactaccattttcatctcaagaacatcaaacttctt-ttcttcttcattgaatatgtgatctccatctttttcattctaaaattgaatc 7215270  T
Q  357 atacttatcattagaggtaaattaaccc-aattcatcaaggggtaa 401  Q
    ||| |||||||||  ||||||||| ||| |||||| |||| |||||    
T  7215269 atatttatcattaacggtaaattaccccgaattcaacaagaggtaa 7215224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 261 - 378
Target Start/End: Original strand, 41264536 - 41264653
Alignment:
Q  261 tacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatac 360  Q
    |||||| |||||| |||||| | |||||||||||||| ||||||||||| |||||| ||| || ||| ||| | |  || |||| | ||||||||||||     
T  41264536 tacaatcagttacaattttcatatcaagaacatcaaatttcttcatctctttcatttaacttgagatttccatattttttgttctaaaatcgaatcatat 41264635  T
Q  361 ttatcattagaggtaaat 378  Q
    ||||||||||||||||||    
T  41264636 ttatcattagaggtaaat 41264653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 271 - 355
Target Start/End: Complemental strand, 2822681 - 2822597
Alignment:
Q  271 taccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaat 355  Q
    |||||||||| | |||| ||||| ||| ||||||||||||||| || ||| |||||||||| |||||||| || |||||||||||    
T  2822681 taccattttcatttcaaaaacattaaatttcttcatctccttcctttaacgtgtgatctccatctcattcatttcagaatcgaat 2822597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 253 - 329
Target Start/End: Original strand, 14138544 - 14138620
Alignment:
Q  253 tttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatct 329  Q
    |||||||||||||| | ||||||||||| ||| ||||| |||||||||  ||||||| |||||||||||||| ||||    
T  14138544 tttattcttacaatcaattaccattttcatcttaagaatatcaaactttctcatctctttcattcaacatgtaatct 14138620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 284 - 344
Target Start/End: Original strand, 40483880 - 40483940
Alignment:
Q  284 tcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttc 344  Q
    ||||||||||| ||||||||||||| ||| | |||||||||||||||| ||||||||||||    
T  40483880 tcaagaacatccaacttcttcatcttctttactcaacatgtgatctccatctcattcgttc 40483940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 242 - 309
Target Start/End: Original strand, 37077641 - 37077707
Alignment:
Q  242 ttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctc 309  Q
    |||||| |||||||||||||| ||| ||||| ||||||| |||||||||||| |||||||||||||||    
T  37077641 ttttctccatctttattctta-aatcagttatcattttcatctcaagaacattaaacttcttcatctc 37077707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 244 - 329
Target Start/End: Original strand, 972874 - 972959
Alignment:
Q  244 ttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatct 329  Q
    ||||||||||||||| ||  ||| |||| |||||||| || |||||| |||||| ||||||||||| |||||| ||||||| ||||    
T  972874 ttcttcatctttatttttgaaatcagttgccattttcatcacaagaaaatcaaatttcttcatctctttcatttaacatgttatct 972959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 257 - 369
Target Start/End: Complemental strand, 7982327 - 7982214
Alignment:
Q  257 ttcttacaattagttaccattttcctctcaagaacatcaaactt-cttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaat 355  Q
    |||| ||||||||||| ||||||  |||||| |||||  || || ||||||||||||||||||||||||||| ||  |||| ||| || |||||| ||||    
T  7982327 ttctcacaattagttatcatttttatctcaaaaacatttaagtttcttcatctccttcattcaacatgtgatttctatctccttcatttcagaattgaat 7982228  T
Q  356 catacttatcatta 369  Q
     ||| |||||||||    
T  7982227 aatatttatcatta 7982214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 257 - 330
Target Start/End: Original strand, 37077763 - 37077836
Alignment:
Q  257 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctc 330  Q
    |||||||||| ||||| ||||||| |||||| ||||||||| ||||| || |  ||||||||||||||||||||    
T  37077763 ttcttacaatcagttagcattttcatctcaaaaacatcaaatttcttaatttttttcattcaacatgtgatctc 37077836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 282 - 397
Target Start/End: Complemental strand, 5205585 - 5205469
Alignment:
Q  282 tctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattagaggtaaatta- 380  Q
    |||||| |||||||||||| || |||||||| ||| |||||||||||||| |||  ||||||  | |||||||||||  || ||||||  |||||| ||     
T  5205585 tctcaaaaacatcaaacttttttatctcctttattaaacatgtgatctccatctatttcgttttataatcgaatcatgattgtcattaagggtaaaatac 5205486  T
Q  381 acccaattcatcaaggg 397  Q
     ||||||||||||||||    
T  5205485 ccccaattcatcaaggg 5205469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 397 - 505
Target Start/End: Complemental strand, 17736856 - 17736748
Alignment:
Q  397 ggtaatgtaggccccacggatagagttttttccttataatcatttaccattttcatctcaagaacaacaaacatcttcatatccttcattcaacatgtga 496  Q
    |||||| ||| || ||| |||||| |||||| |||| || || |||||||||||||||||| || |  |||| ||||||| | ||||| |||||||||||    
T  17736856 ggtaatatagacctcactgatagaatttttttcttacaaccaattaccattttcatctcaataatattaaacttcttcatcttcttcactcaacatgtga 17736757  T
Q  497 tctccatct 505  Q
    |||| ||||    
T  17736756 tctctatct 17736748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 272 - 323
Target Start/End: Complemental strand, 39730363 - 39730312
Alignment:
Q  272 accattttcctctcaagaacatcaaacttcttcatctccttcattcaacatg 323  Q
    ||||||||| ||||||||||||||||||| |||||||| |||||| ||||||    
T  39730363 accattttcatctcaagaacatcaaactttttcatctctttcatttaacatg 39730312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 285 - 402
Target Start/End: Complemental strand, 26105383 - 26105266
Alignment:
Q  285 caagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattagaggtaaattaaccc 384  Q
    ||||||| |||||||||||||||| |||| || ||||| |||||  | |||| ||||||| ||||| |||||  |||| ||||||  | ||||||| |||    
T  26105383 caagaacgtcaaacttcttcatcttcttcgttgaacatatgatcctcatctc-ttcgttcaagaattgaatcccacttgtcattatggataaattacccc 26105285  T
Q  385 -aattcatcaaggggtaat 402  Q
     ||||||||||||||||||    
T  26105284 aaattcatcaaggggtaat 26105266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 274 - 327
Target Start/End: Complemental strand, 7113669 - 7113616
Alignment:
Q  274 cattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgat 327  Q
    ||||||| ||||||||| || ||||||||||||||| |||||||||| ||||||    
T  7113669 cattttcatctcaagaatattaaacttcttcatctcattcattcaacgtgtgat 7113616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 440 - 505
Target Start/End: Complemental strand, 7215527 - 7215462
Alignment:
Q  440 ttaccattttcatctcaagaacaacaaacatcttcatatccttcattcaacatgtgatctccatct 505  Q
    |||| |||||||| |||||||||  |||| | ||||||| |||||||||||||||||||| |||||    
T  7215527 ttactattttcatatcaagaacattaaactttttcatattcttcattcaacatgtgatcttcatct 7215462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 286 - 331
Target Start/End: Complemental strand, 26105538 - 26105493
Alignment:
Q  286 aagaacatcaaacttcttcatctccttcattcaacatgtgatctcc 331  Q
    ||||||||||||||||| |||||||||||||  |||||||||||||    
T  26105538 aagaacatcaaacttctccatctccttcatttcacatgtgatctcc 26105493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 444 - 505
Target Start/End: Original strand, 41264393 - 41264454
Alignment:
Q  444 cattttcatctcaagaacaacaaacatcttcatatccttcattcaacatgtgatctccatct 505  Q
    |||||||||||||||||||  |||| | |||||||  ||||||||||||||||||| |||||    
T  41264393 cattttcatctcaagaacattaaactttttcatattgttcattcaacatgtgatcttcatct 41264454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 327
Target Start/End: Complemental strand, 7982497 - 7982382
Alignment:
Q  212 gtaatttgcccctatcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctcct 311  Q
    ||||||| ||||| |||||||||| |||    || || ||||||||| ||| ||| ||||||||||||| |||  ||||||||||| ||||||  ||| |    
T  7982497 gtaatttacccctttcaaagaaaattttcacctttttaatctttattgttaaaatcagttaccattttcatcttgagaacatcaaatttcttcgactctt 7982398  T
Q  312 tcattcaacatgtgat 327  Q
    || || ||||||||||    
T  7982397 tcttttaacatgtgat 7982382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 505
Target Start/End: Complemental strand, 7215354 - 7215291
Alignment:
Q  441 taccattttcatctcaagaacaacaaacatcttcatatccttcattcaacatgtgatctccatct 505  Q
    |||||||||||||||||||||| ||||| ||||  | | ||||||| || |||||||||||||||    
T  7215354 taccattttcatctcaagaacatcaaacttctt-ttcttcttcattgaatatgtgatctccatct 7215291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 429 - 505
Target Start/End: Original strand, 14138550 - 14138626
Alignment:
Q  429 cttataatcatttaccattttcatctcaagaacaacaaacatcttcatatccttcattcaacatgtgatctccatct 505  Q
    |||| ||||| ||||||||||||||| ||||| | ||||| |  |||| || |||||||||||||| |||| |||||    
T  14138550 cttacaatcaattaccattttcatcttaagaatatcaaactttctcatctctttcattcaacatgtaatcttcatct 14138626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 424 - 500
Target Start/End: Original strand, 37077760 - 37077836
Alignment:
Q  424 ttttccttataatcatttaccattttcatctcaagaacaacaaacatcttcatatccttcattcaacatgtgatctc 500  Q
    |||| |||| ||||| ||| |||||||||||||| |||| ||||  |||| || |  ||||||||||||||||||||    
T  37077760 tttttcttacaatcagttagcattttcatctcaaaaacatcaaatttcttaatttttttcattcaacatgtgatctc 37077836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 1e-42; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 221 - 460
Target Start/End: Complemental strand, 27651616 - 27651379
Alignment:
Q  221 ccctatcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaac 320  Q
    ||||||||||||||||||   ||||||||||||||||| ||||||| ||| ||||||||| |||||||||||||||||  || |||||||||||||||||    
T  27651616 ccctatcaaagaaaaattcatttttcttcatctttatttttacaat-agtaaccattttcatctcaagaacatcaaacaact-catctccttcattcaac 27651519  T
Q  321 atgtgatctccttctcattcgttccagaatcgaatcatacttatcattagaggtaaa-ttaacccaattcatcaaggggtaatgtaggccccacggatag 419  Q
    ||||||| ||| |||| | || || ||||| ||||||||||| |||| || |||||| |   |||||||||||||  |||||||||| || ||| |||||    
T  27651518 atgtgatatccatctcctccggtctagaattgaatcatacttttcataaggggtaaactccccccaattcatcaaaaggtaatgtagacctcaccgatag 27651419  T
Q  420 agttttttccttataatcatttaccattttcatctcaagaa 460  Q
     ||||||| |||| ||||| ||| |||||||||||||||||    
T  27651418 ggtttttt-cttacaatcaattatcattttcatctcaagaa 27651379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 257 - 409
Target Start/End: Original strand, 23944079 - 23944231
Alignment:
Q  257 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatc 356  Q
    ||||||||||||||| |||||||| ||| ||||||||||||||||||| |||| ||||||||||||||||| ||| |||| ||  |||||||||||||||    
T  23944079 ttcttacaattagttgccattttcatcttaagaacatcaaacttcttcttctctttcattcaacatgtgatttccatctcctttattccagaatcgaatc 23944178  T
Q  357 atacttatcattagaggtaaattaaccc-aattcatcaaggggtaatgtaggcc 409  Q
    ||||||||||| || ||| ||| | ||| ||||||||||||| |||||||||||    
T  23944179 atacttatcatcaggggt-aatcatcccaaattcatcaagggataatgtaggcc 23944231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 260 - 503
Target Start/End: Original strand, 34891371 - 34891612
Alignment:
Q  260 ttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcata 359  Q
    ||||||||  ||| ||||||| | | |||||||||||||||||| |||| ||||||| ||||||||||||   |||| ||| ||||  ||||||||  ||    
T  34891371 ttacaattcattatcattttcatattaagaacatcaaacttctttatcttcttcatttaacatgtgatctagatctctttcattcccaaatcgaattgta 34891470  T
Q  360 cttatcattagaggtaaattaacccaattcatcaaggggtaatgtaggccccacggatagagttttttccttataatcatttaccattttcatctcaaga 459  Q
     || |||| || ||||||||| |||| ||||||||||   ||| |||| | ||| ||||  ||||||| ||||  || | ||| |||||| |||||||||    
T  34891471 tttgtcatgaggggtaaattaccccagttcatcaaggaagaatatagg-ctcaccgatatggtttttt-cttactattagttatcattttgatctcaaga 34891568  T
Q  460 acaacaaacatcttcatatccttcattcaacatgtgatctccat 503  Q
    ||| ||||  ||||||| ||||||||||||||||||||||||||    
T  34891569 acatcaaatttcttcatctccttcattcaacatgtgatctccat 34891612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 257 - 331
Target Start/End: Original strand, 34891536 - 34891610
Alignment:
Q  257 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctcc 331  Q
    ||||||| |||||||| ||||||  |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  34891536 ttcttactattagttatcattttgatctcaagaacatcaaatttcttcatctccttcattcaacatgtgatctcc 34891610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 257 - 361
Target Start/End: Complemental strand, 32138958 - 32138854
Alignment:
Q  257 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatc 356  Q
    |||||| ||| | ||||||||||| ||| |||||||||||| ||||||||||||||| |||||||||| |||||| |||  ||||||| |||| ||||||    
T  32138958 ttcttaaaatcaattaccattttcatcttaagaacatcaaaattcttcatctccttcgttcaacatgtaatctccatcttcttcgttctagaagcgaatc 32138859  T
Q  357 atact 361  Q
    |||||    
T  32138858 atact 32138854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 183 - 331
Target Start/End: Original strand, 43208674 - 43208823
Alignment:
Q  183 ttttctacattacctctagatgaattg-gcgtaatttgcccctatcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcc 281  Q
    |||||||||||| | || ||||||||| | |||||||  ||||||| || ||||| ||  ||||||||||||||||||||||||| | ||||||||||      
T  43208674 ttttctacattatcccttgatgaattgagggtaatttatccctatcgaataaaaagttatttttcttcatctttattcttacaatcaattaccattttta 43208773  T
Q  282 tctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctcc 331  Q
    | | ||||| |||||| | |||||| |||||| |||||| ||| ||||||    
T  43208774 ttttaagaatatcaaattccttcatttccttcgttcaacgtgtaatctcc 43208823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 363 - 505
Target Start/End: Complemental strand, 32139024 - 32138880
Alignment:
Q  363 atcattagaggtaaattaa-cccaattcatcaaggggtaatgtaggccccacggatagagttttttc-cttataatcatttaccattttcatctcaagaa 460  Q
    |||||||| |||||||||  ||| ||||||||| |||||||||||| | ||||  |   |||||||  |||| ||||| ||||||||||||||| |||||    
T  32139024 atcattaggggtaaattactcccgattcatcaaagggtaatgtaggtctcacgattttggttttttttcttaaaatcaattaccattttcatcttaagaa 32138925  T
Q  461 caacaaacatcttcatatccttcattcaacatgtgatctccatct 505  Q
    || ||||  ||||||| |||||| |||||||||| ||||||||||    
T  32138924 catcaaaattcttcatctccttcgttcaacatgtaatctccatct 32138880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 286 - 407
Target Start/End: Complemental strand, 32962434 - 32962311
Alignment:
Q  286 aagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattagag-gtaaattaac-c 383  Q
    ||||| ||||||||| ||||||||||| ||||||||| |||||| | | |  || ||| || |||||||||||| ||||||||| ||  ||||||| | |    
T  32962434 aagaaaatcaaactttttcatctcctttattcaacatatgatctacatattttttgtttcaaaatcgaatcatatttatcattatagaataaattacctc 32962335  T
Q  384 caattcatcaaggggtaatgtagg 407  Q
    ||||||||||||||||||||||||    
T  32962334 caattcatcaaggggtaatgtagg 32962311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 222 - 312
Target Start/End: Original strand, 4674876 - 4674966
Alignment:
Q  222 cctatcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctcctt 312  Q
    ||||||||| ||||| |  |||||||| ||||||||| ||  ||||||||||||||||| ||||||||| ||||||||| || ||||||||    
T  4674876 cctatcaaacaaaaactcccttttctttatctttatttttgaaattagttaccattttcatctcaagaaaatcaaacttatttatctcctt 4674966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 250 - 328
Target Start/End: Complemental strand, 33192414 - 33192336
Alignment:
Q  250 atctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatc 328  Q
    ||||||||| |||||| |||||||||||||| ||||||||| || ||| ||||| ||||| ||||||||||| ||||||    
T  33192414 atctttatttttacaagtagttaccattttcttctcaagaatattaaatttctttatctctttcattcaacaagtgatc 33192336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 384 - 505
Target Start/End: Original strand, 23944037 - 23944157
Alignment:
Q  384 caattcatcaaggggtaatgtaggccccacggatagagttttttccttataatcatttaccattttcatctcaagaacaacaaacatcttcatatccttc 483  Q
    |||||||||||||||||||||||| | |||   |  ||||||||| ||| ||| | || |||||||||||| ||||||| ||||| ||||| | || |||    
T  23944037 caattcatcaaggggtaatgtaggtctcaccatttaagttttttc-ttacaattagttgccattttcatcttaagaacatcaaacttcttcttctctttc 23944135  T
Q  484 attcaacatgtgatctccatct 505  Q
    |||||||||||||| |||||||    
T  23944136 attcaacatgtgatttccatct 23944157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 311 - 406
Target Start/End: Complemental strand, 31152919 - 31152823
Alignment:
Q  311 ttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattagaggtaaatta-acccaattcatcaaggggtaatgtag 406  Q
    ||||||||| ||||||||||| |||| |||||| || ||||||||| ||||| | |||| ||||||||||  |||||||||||||| | ||||||||    
T  31152919 ttcattcaaaatgtgatctccatctctttcgtttcataatcgaatcctacttgttattataggtaaattacccccaattcatcaagtgataatgtag 31152823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 212 - 394
Target Start/End: Complemental strand, 758062 - 757877
Alignment:
Q  212 gtaatttgcccctatcaaagaaaaattt--tcttttcttcatctttattcttacaa-ttagttaccattttcctctcaagaacatcaaacttcttcatct 308  Q
    ||||||| |||||||||||||||||| |  | |||| ||| |||||||| ||  || ||||||| ||||||| |||||| ||  | ||| || || ||||    
T  758062 gtaatttacccctatcaaagaaaaatctcatttttttttcttctttatttttttaaattagttatcattttcatctcaaaaatcttaaatttatttatct 757963  T
Q  309 ccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattagaggtaaattaaccc-aattcatcaa 394  Q
    ||||||||||||||||||||| | |||| ||| ||| | ||| ||||| ||||||| |||| | |||||||| ||| ||||||||||    
T  757962 ccttcattcaacatgtgatcttcatctccttcattctataattgaatcctacttattatta-atgtaaattatcccaaattcatcaa 757877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 442 - 505
Target Start/End: Complemental strand, 27651566 - 27651504
Alignment:
Q  442 accattttcatctcaagaacaacaaacatcttcatatccttcattcaacatgtgatctccatct 505  Q
    ||||||||||||||||||||| |||||| || ||| |||||||||||||||||||| |||||||    
T  27651566 accattttcatctcaagaacatcaaacaact-catctccttcattcaacatgtgatatccatct 27651504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 257 - 406
Target Start/End: Complemental strand, 31171535 - 31171384
Alignment:
Q  257 ttcttacaattagttaccattttcctctcaagaa-catcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaat 355  Q
    ||||| ||||||  |||||||||| |||  |||| | |||| ||||| |||||  ||||||||| ||||||| ||| |||| |||||| || ||||||||    
T  31171535 ttcttgcaattaaataccattttcatctttagaaacttcaatcttctacatctgtttcattcaaaatgtgatttccatctctttcgtttcataatcgaat 31171436  T
Q  356 catacttatcattagaggtaaattaaccc-aattcatcaaggggtaatgtag 406  Q
    | ||||| | |||| |||||||||| ||| ||||||||||| | ||||||||    
T  31171435 cctacttgttattataggtaaattacccccaattcatcaagtgataatgtag 31171384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 257 - 380
Target Start/End: Original strand, 42012804 - 42012926
Alignment:
Q  257 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatc 356  Q
    |||||| ||| |||||||| |||  || |||||||||||||||| |||||||  || |||||||||||||||||| | |  ||||||| |||||  ||||    
T  42012804 ttcttagaatcagttaccacttttatcacaagaacatcaaactttttcatctattt-attcaacatgtgatctccatttacttcgttcaagaattaaatc 42012902  T
Q  357 atacttatcattagaggtaaatta 380  Q
     || ||||||||||| ||||||||    
T  42012903 ttatttatcattagaagtaaatta 42012926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 276 - 329
Target Start/End: Complemental strand, 3191620 - 3191567
Alignment:
Q  276 ttttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatct 329  Q
    ||||| |||||| ||||||||| |||||||||||||| ||||||||||||||||    
T  3191620 ttttcatctcaaaaacatcaaagttcttcatctcctttattcaacatgtgatct 3191567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 287 - 372
Target Start/End: Complemental strand, 33362454 - 33362369
Alignment:
Q  287 agaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattagag 372  Q
    |||||||||||||| || ||||||||||||||||||||||| | |  ||| || |||| | |||||||||||| ||| ||||||||    
T  33362454 agaacatcaaactttttaatctccttcattcaacatgtgatttacaactcttttgttctaaaatcgaatcatatttaccattagag 33362369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 271 - 407
Target Start/End: Original strand, 44754928 - 44755065
Alignment:
Q  271 taccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattag 370  Q
    |||||||||| | || |||||||||||||||||| | |  ||||||||||||||||||| | |||| || | |||| ||||||||    ||||| |||||    
T  44754928 taccattttcatttctagaacatcaaacttcttcctttatttcattcaacatgtgatcttcatctcctttgatccataatcgaattcggcttattattag 44755027  T
Q  371 aggtaaattaac-ccaattcatcaaggggtaatgtagg 407  Q
     ||||||||  | | ||||||||||||| |||||||||    
T  44755028 gggtaaattgcctcgaattcatcaagggataatgtagg 44755065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 274 - 391
Target Start/End: Complemental strand, 22593624 - 22593510
Alignment:
Q  274 cattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattagagg 373  Q
    ||||||| ||||||||||||||||||||   ||||  ||||||||||||||||| ||  |||| ||||||| | ||||||||| |  || ||||||| |     
T  22593624 cattttcatctcaagaacatcaaacttc---atctatttcattcaacatgtgatatctatctccttcgttctaaaatcgaatcgtttttgtcattaggga 22593528  T
Q  374 taaattaacccaattcat 391  Q
    ||||||  ||||||||||    
T  22593527 taaattgccccaattcat 22593510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 447 - 497
Target Start/End: Complemental strand, 8354444 - 8354394
Alignment:
Q  447 tttcatctcaagaacaacaaacatcttcatatccttcattcaacatgtgat 497  Q
    ||||||||||||||||  |||| ||| ||||||||||||||||||||||||    
T  8354444 tttcatctcaagaacattaaacttctacatatccttcattcaacatgtgat 8354394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 277 - 327
Target Start/End: Complemental strand, 8354444 - 8354394
Alignment:
Q  277 tttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgat 327  Q
    |||| |||||||||||| |||||||| ||| ||||||||||||||||||||    
T  8354444 tttcatctcaagaacattaaacttctacatatccttcattcaacatgtgat 8354394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 183 - 280
Target Start/End: Complemental strand, 32988665 - 32988567
Alignment:
Q  183 ttttctacattacctctagatgaattggcg-taatttgcccctatcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttc 280  Q
    |||| ||||||| | || |||||||||| | |||||| | | ||||||||||||||  | ||||||||||||||||||||||||| || || |||||||    
T  32988665 ttttatacattatccctcgatgaattgggggtaatttacacatatcaaagaaaaatcatattttcttcatctttattcttacaatcagctatcattttc 32988567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 257 - 306
Target Start/End: Complemental strand, 29152399 - 29152350
Alignment:
Q  257 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcat 306  Q
    |||||||||| |||||| |||||| |||||| ||||||||||||||||||    
T  29152399 ttcttacaatcagttactattttcatctcaataacatcaaacttcttcat 29152350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 309
Target Start/End: Complemental strand, 8900722 - 8900670
Alignment:
Q  257 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctc 309  Q
    |||||||||| | ||||||||||  ||||||||||| ||||||||||||||||    
T  8900722 ttcttacaataaattaccatttttatctcaagaacaacaaacttcttcatctc 8900670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 476
Target Start/End: Complemental strand, 8900892 - 8900673
Alignment:
Q  257 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctcc-ttctcattcgttccagaatcgaat 355  Q
    |||||||||| |  ||| |||||| |||| ||||||| ||| ||||||||||   | || ||||||||||||| | || |  || ||| || ||||||||    
T  8900892 ttcttacaatcaaatactattttcatctctagaacattaaatttcttcatctgtcttatacaacatgtgatctacatttttttttgtttcataatcgaat 8900793  T
Q  356 catacttatcattagaggtaaattaacccaattcatcaaggggtaatgtaggccccacggatagagttttttccttataatcatttaccattttcatctc 455  Q
      ||||| | ||||| | ||||||| ||||||||||||| || ||||||||||  ||    |   |||||||| ||| ||| | |||||||||| |||||    
T  8900792 tctacttgttattagggataaattaccccaattcatcaatggataatgtaggcttcaacatttttgttttttc-ttacaataaattaccatttttatctc 8900694  T
Q  456 aagaacaacaaacatcttcat 476  Q
    ||||||||||||| |||||||    
T  8900693 aagaacaacaaacttcttcat 8900673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 227 - 324
Target Start/End: Complemental strand, 29152587 - 29152493
Alignment:
Q  227 caaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgt 324  Q
    ||||||||||| | ||||||||||||||||||||   |||||| | | |||||  |||||| ||||| ||| || ||||||| |||||||||||||||    
T  29152587 caaagaaaaatctccttttcttcatctttattct--gaattagctgcgatttttatctcaaaaacattaaa-tttttcatctacttcattcaacatgt 29152493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 446 - 499
Target Start/End: Complemental strand, 3191620 - 3191567
Alignment:
Q  446 ttttcatctcaagaacaacaaacatcttcatatccttcattcaacatgtgatct 499  Q
    |||||||||||| |||| ||||  ||||||| ||||| ||||||||||||||||    
T  3191620 ttttcatctcaaaaacatcaaagttcttcatctcctttattcaacatgtgatct 3191567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 270 - 322
Target Start/End: Complemental strand, 31152790 - 31152738
Alignment:
Q  270 ttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacat 322  Q
    ||||||||||| ||| || |||||||| ||||||||| || ||||||||||||    
T  31152790 ttaccattttcatcttaaaaacatcaatcttcttcatttctttcattcaacat 31152738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 289 - 396
Target Start/End: Original strand, 42012670 - 42012775
Alignment:
Q  289 aacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattagaggtaaattaacccaatt 388  Q
    ||||||||||||||| ||||  |||||| || ||||||| | | |||  ||||||||| ||||||||||||  | |||| || | ||||||| |||||||    
T  42012670 aacatcaaacttcttaatct--ttcatttaagatgtgatttacatctttttcgttccaaaatcgaatcatatatgtcatgagggataaattaccccaatt 42012767  T
Q  389 catcaagg 396  Q
     |||||||    
T  42012768 aatcaagg 42012775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 505
Target Start/End: Original strand, 44754928 - 44754992
Alignment:
Q  441 taccattttcatctcaagaacaacaaacatcttcatatccttcattcaacatgtgatctccatct 505  Q
    |||||||||||| || |||||| ||||| ||||| | |  ||||||||||||||||||| |||||    
T  44754928 taccattttcatttctagaacatcaaacttcttcctttatttcattcaacatgtgatcttcatct 44754992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 1e-36; HSPs: 40)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 223 - 407
Target Start/End: Complemental strand, 38839765 - 38839582
Alignment:
Q  223 ctatcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacat 322  Q
    ||||||||||||||| |  |||| ||||||||||||||||||||||||||  |||||| ||||||||||||||||| ||||||||| |||||||| ||||    
T  38839765 ctatcaaagaaaaatctaatttttttcatctttattcttacaattagtta--attttcatctcaagaacatcaaacctcttcatcttcttcattcgacat 38839668  T
Q  323 gtgatctccttctcattcgttccagaatcgaatcatacttatcattagaggtaaattaac-ccaattcatcaaggggtaatgtagg 407  Q
    |||||||   |||  ||||||||| ||||||||| ||||| |||||||  || ||||| |  || |||||||||||||||||||||    
T  38839667 gtgatcttgatcttcttcgttccacaatcgaatcctacttttcattaggagttaattaccgtcagttcatcaaggggtaatgtagg 38839582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 223 - 505
Target Start/End: Complemental strand, 34601715 - 34601435
Alignment:
Q  223 ctatcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacat 322  Q
    |||| |||||||||| |  |||||||||||||||||||||| ||||||||  |||||| |||||| |||||||||| | ||||||| ||| |||||||||    
T  34601715 ctataaaagaaaaatctcattttcttcatctttattcttacgattagttattattttcatctcaaaaacatcaaacgttttcatctactt-attcaacat 34601617  T
Q  323 gtgatctccttctcattcgttccagaatcgaatcatacttatcattagaggtaaattaac-ccaattcatcaaggggtaatgtaggccccacggatagag 421  Q
    ||||| | | |||| ||| ||  | |||||||||||| || |||||||||  |||||| | | |||| |||||||||| ||||||| | ||| ||||  |    
T  34601616 gtgatattcatctccttccttataaaatcgaatcatagttgtcattagagacaaattacctctaatttatcaaggggt-atgtaggtctcactgataagg 34601518  T
Q  422 ttttttccttataatcatttaccattttcatctcaagaacaacaaacatcttcatatccttcattcaacatgtgatctccatct 505  Q
    |||||||| || ||||| |||| | ||| |||| ||||||| ||||| || |||| ||||| |||||||||||||| |||||||    
T  34601517 ttttttcc-tacaatcaattacaacttttatcttaagaacatcaaacttcctcatctcctttattcaacatgtgatttccatct 34601435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 257 - 413
Target Start/End: Original strand, 49897873 - 49898030
Alignment:
Q  257 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatc 356  Q
    ||||||| |||| ||||||||||   ||||||||| || ||||||||| |||||||||||||||||||||||||| |||| || |||| |||||||||||    
T  49897873 ttcttacgattaattaccatttttagctcaagaacgtcgaacttcttcttctccttcattcaacatgtgatctccatctcctttgttctagaatcgaatc 49897972  T
Q  357 atacttatcattagaggtaaattaac-ccaattcatcaaggggtaatgtaggccccac 413  Q
    ||| || ||||||||||||||||| | |  ||||| ||| |||||||||| |||||||    
T  49897973 ataattgtcattagaggtaaattaccactgattcaacaaagggtaatgtacgccccac 49898030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 257 - 398
Target Start/End: Original strand, 3232131 - 3232273
Alignment:
Q  257 ttcttacaattagttaccattttcctc-tcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaat 355  Q
    ||||||||||||||||||||||||  | ||||||||||| | ||||||||||| ||||||||||||||| |||||| |||| ||  ||| || |||||||    
T  3232131 ttcttacaattagttaccattttcaacctcaagaacatcca-cttcttcatcttcttcattcaacatgtaatctccatctctttacttctagtatcgaat 3232229  T
Q  356 catacttatcattagaggtaaattaaccc-aattcatcaagggg 398  Q
    ||||||||||||||||||||||||  ||| ||||||||||||||    
T  3232230 catacttatcattagaggtaaattgcccctaattcatcaagggg 3232273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 295 - 505
Target Start/End: Original strand, 67967 - 68178
Alignment:
Q  295 aaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattagaggtaaattaacccaat---tcat 391  Q
    |||||||||||| |||||||||| ||||||||||| | |||| ||| ||||| ||||| |||||| || ||||||||||||||||| | || |   ||||    
T  67967 aaacttcttcatatccttcattctacatgtgatcttcatctctttcattccaaaatcggatcataattgtcattagaggtaaattaccacatttcatcat 68066  T
Q  392 caaggggtaatgtaggccccacggatagagttttttccttataatcatttaccattttcatctcaagaacaacaaacatcttcatatccttcattcaaca 491  Q
    ||   ||||||| ||||| ||  ||||| ||||||| |||| ||| | |||||||||| || ||||||||| | ||| ||||||| ||||||||| ||||    
T  68067 cattaggtaatgcaggcctcattgatag-gtttttt-cttacaatgagttaccatttttatttcaagaacatctaacttcttcatctccttcatttaaca 68164  T
Q  492 tgtgatctccatct 505  Q
    ||||||||||||||    
T  68165 tgtgatctccatct 68178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 183 - 380
Target Start/End: Original strand, 52432590 - 52432786
Alignment:
Q  183 ttttctacattacctctagatgaatt-ggcgtaatttgcccctatcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcc 281  Q
    ||||||||||||||||| |||||||| || ||||||| ||  ||||||| || ||  |  | || |||||||||||||||| ||| | |||||||||||     
T  52432590 ttttctacattacctcttgatgaatttggggtaatttaccattatcaaataataaaatcatatt-ttcatctttattcttataatcaattaccattttca 52432688  T
Q  282 tctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattagaggtaaatta 380  Q
    |||||||||||| |||||||||||||||||||||| |||| ||||||||| ||| ||| |||| | |||||||| ||| ||| ||| || |||||||||    
T  52432689 tctcaagaacattaaacttcttcatctccttcatttaacaagtgatctccatctaatttgttctataatcgaattatatttaccatcag-ggtaaatta 52432786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 257 - 365
Target Start/End: Original strand, 68100 - 68208
Alignment:
Q  257 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatc 356  Q
    |||||||||| ||||||||||||  | ||||||||||| ||||||||||||||||||||| |||||||||||||| |||  ||||||||| ||||||||     
T  68100 ttcttacaatgagttaccatttttatttcaagaacatctaacttcttcatctccttcatttaacatgtgatctccatctttttcgttccaaaatcgaatg 68199  T
Q  357 atacttatc 365  Q
    ||| |||||    
T  68200 atatttatc 68208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 282 - 380
Target Start/End: Original strand, 3367810 - 3367908
Alignment:
Q  282 tctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattagaggtaaatta 380  Q
    |||||||||||||||| || |||||||| ||||||||||||||||||||| |||| |||||||||||||   |||||| ||||||||| | ||||||||    
T  3367810 tctcaagaacatcaaattttttcatctcattcattcaacatgtgatctccatctctttcgttccagaattatatcatatttatcattaaaagtaaatta 3367908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 268 - 407
Target Start/End: Complemental strand, 5500878 - 5500739
Alignment:
Q  268 agttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcat 367  Q
    ||||||||||||  |||||| ||||||||| |||||||| || || |||||||||||||||||| ||| ||||||| ||||||| ||| ||||  || ||    
T  5500878 agttaccatttttatctcaaaaacatcaaatttcttcatttcatt-attcaacatgtgatctccatcttattcgtttcagaatcaaataatacagattat 5500780  T
Q  368 tagaggtaaattaac-ccaattcatcaaggggtaatgtagg 407  Q
    ||||| ||||||| |  |||||||||||| |||||||||||    
T  5500779 tagagataaattatcttcaattcatcaagaggtaatgtagg 5500739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 257 - 331
Target Start/End: Original strand, 46080974 - 46081048
Alignment:
Q  257 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctcc 331  Q
    |||||||||| | ||||||||||| |||||||||||| |||||||||||||||||||| ||||||||| ||||||    
T  46080974 ttcttacaatcaattaccattttcatctcaagaacattaaacttcttcatctccttcactcaacatgtaatctcc 46081048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 284 - 376
Target Start/End: Original strand, 7104295 - 7104387
Alignment:
Q  284 tcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattagaggtaa 376  Q
    ||||||| || ||| |||||||||||||||||||||||||| || | | |||| |||||| |||||||||||||||||| |||||||| ||||    
T  7104295 tcaagaatattaaatttcttcatctccttcattcaacatgtaatattcatctctttcgtttcagaatcgaatcatacttgtcattagaagtaa 7104387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 429 - 505
Target Start/End: Original strand, 52432666 - 52432742
Alignment:
Q  429 cttataatcatttaccattttcatctcaagaacaacaaacatcttcatatccttcattcaacatgtgatctccatct 505  Q
    |||||||||| |||||||||||||||||||||||  |||| ||||||| ||||||||| |||| |||||||||||||    
T  52432666 cttataatcaattaccattttcatctcaagaacattaaacttcttcatctccttcatttaacaagtgatctccatct 52432742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 257 - 372
Target Start/End: Original strand, 52432836 - 52432951
Alignment:
Q  257 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatc 356  Q
    |||||||||||||||| ||||||| |||||| |||||||||||||||||| | |||||||| |||||| || |   |||| |||||| || |||| ||||    
T  52432836 ttcttacaattagttatcattttcttctcaaaaacatcaaacttcttcattttcttcattcgacatgtaatttttatctctttcgtttcataatcaaatc 52432935  T
Q  357 atacttatcattagag 372  Q
    ||| || |||||||||    
T  52432936 atatttgtcattagag 52432951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 242 - 505
Target Start/End: Original strand, 3231946 - 3232209
Alignment:
Q  242 ttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcg 341  Q
    |||||||||| |||||  ||||||| |||| | |||||| ||||||||||| ||||||||||||| || ||||||||||||||||| | |  ||| ||||    
T  3231946 ttttcttcatgtttatctttacaatcagttgctattttcatctcaagaacaacaaacttcttcatgtcattcattcaacatgtgatattcacctccttcg 3232045  T
Q  342 ttccagaatcgaatcatactta-tcattagaggtaaatta-acccaattcatcaaggggtaatgtaggccccacggatagagttttttccttataatcat 439  Q
    ||| | ||| ||||  |||||| |||| |  |||||||||  | ||| || ||||||| || |||| ||| ||| ||||  ||||||| |||| ||| |     
T  3232046 ttctataattgaatactacttagtcatcaatggtaaattactctcaactcgtcaagggatagtgtatgcctcaccgata-tgtttttt-cttacaattag 3232143  T
Q  440 ttaccattttc-atctcaagaacaacaaacatcttcatatccttcattcaacatgtgatctccatct 505  Q
    ||||||||||| | |||||||||| |  || ||||||| | ||||||||||||||| ||||||||||    
T  3232144 ttaccattttcaacctcaagaacatc-cacttcttcatcttcttcattcaacatgtaatctccatct 3232209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 422 - 507
Target Start/End: Original strand, 46080969 - 46081054
Alignment:
Q  422 ttttttccttataatcatttaccattttcatctcaagaacaacaaacatcttcatatccttcattcaacatgtgatctccatctga 507  Q
    |||||| |||| ||||| |||||||||||||||||||||||  |||| ||||||| ||||||| ||||||||| ||||||| ||||    
T  46080969 tttttttcttacaatcaattaccattttcatctcaagaacattaaacttcttcatctccttcactcaacatgtaatctccacctga 46081054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 242 - 369
Target Start/End: Original strand, 15321029 - 15321156
Alignment:
Q  242 ttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcg 341  Q
    ||||||||||||| ||| ||||||  ||||  ||||||| |||||| ||||| ||| || ||||| ||||||||||||||||| |||| | |||| |||     
T  15321029 ttttcttcatcttaattattacaacgagttgtcattttcttctcaaaaacattaaattttttcatatccttcattcaacatgtaatcttcatctctttca 15321128  T
Q  342 ttccagaatcgaatcatacttatcatta 369  Q
    || ||||||| ||||||| || ||||||    
T  15321129 tttcagaatcaaatcataattgtcatta 15321156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 314 - 397
Target Start/End: Complemental strand, 41148651 - 41148568
Alignment:
Q  314 attcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattagaggtaaattaacccaattcatcaaggg 397  Q
    |||||||||||||| ||| |||| ||||||| ||||||||||  ||||| ||||||| | ||||||| ||||||||||||||||    
T  41148651 attcaacatgtgatatccatctccttcgttctagaatcgaattctacttttcattagggataaattaccccaattcatcaaggg 41148568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 242 - 312
Target Start/End: Complemental strand, 2534503 - 2534433
Alignment:
Q  242 ttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctcctt 312  Q
    ||||||||||||||||| ||| ||| | |||||| |||| |||||| ||||||||||||||||||||||||    
T  2534503 ttttcttcatctttatttttaaaataatttaccactttcatctcaaaaacatcaaacttcttcatctcctt 2534433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 286 - 403
Target Start/End: Complemental strand, 34601484 - 34601366
Alignment:
Q  286 aagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattagaggtaaattaac-cc 384  Q
    |||||||||||||||| |||||||||| |||||||||||||| ||| |||   || ||| |  ||| ||||||| || |||| |||||||||||| | ||    
T  34601484 aagaacatcaaacttcctcatctcctttattcaacatgtgatttccatcttcatcattctatgatcaaatcataattgtcataagaggtaaattaccacc 34601385  T
Q  385 aattcatcaaggggtaatg 403  Q
    ||||||| |||||||||||    
T  34601384 aattcattaaggggtaatg 34601366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 257 - 369
Target Start/End: Original strand, 44330466 - 44330578
Alignment:
Q  257 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatc 356  Q
    |||||||||  | ||||||||||| | |||| ||||||| |||||||||| ||| | |||| ||||||||||||  |||||||  ||| ||||| |||||    
T  44330466 ttcttacaaccatttaccattttcatatcaaaaacatcacacttcttcatttccattattctacatgtgatctctatctcatttattcaagaattgaatc 44330565  T
Q  357 atacttatcatta 369  Q
    |||||||| ||||    
T  44330566 atacttattatta 44330578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 214 - 290
Target Start/End: Complemental strand, 45136833 - 45136757
Alignment:
Q  214 aatttgcccctatcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaa 290  Q
    ||||| |||||||||||||||||| |  ||||||||||||||||||||||||| |||||  |||||| || ||||||    
T  45136833 aatttacccctatcaaagaaaaatctcattttcttcatctttattcttacaatcagttattattttcatcgcaagaa 45136757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 257 - 370
Target Start/End: Original strand, 24874601 - 24874715
Alignment:
Q  257 ttcttacaattagttaccattttcctctcaagaacatcaaacttctt-catctccttcattcaacatgtgatctccttctcattcgttccagaatcgaat 355  Q
    |||||||||| | ||||||||||| | | ||||| ||||||||| || ||||||| | |||||||||||||||||  ||| |||| ||| ||||||||||    
T  24874601 ttcttacaatcaattaccattttcattttaagaagatcaaacttttttcatctccataattcaacatgtgatctctgtcttattcattctagaatcgaat 24874700  T
Q  356 catacttatcattag 370  Q
      ||||| |||||||    
T  24874701 gctacttgtcattag 24874715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 257 - 322
Target Start/End: Original strand, 10775166 - 10775231
Alignment:
Q  257 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacat 322  Q
    |||||| ||| | ||||||||||| ||| |||||||||||||||||||||||| ||| ||||||||    
T  10775166 ttcttagaatcaattaccattttcatcttaagaacatcaaacttcttcatctctttcgttcaacat 10775231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 253 - 354
Target Start/End: Original strand, 35956982 - 35957083
Alignment:
Q  253 tttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcg 352  Q
    |||||||||||||||| ||||||||||  |||||| |||||||||||| | ||| || || ||| || ||||||||||| |||  ||||||| | |||||    
T  35956982 tttattcttacaattaattaccatttttatctcaaaaacatcaaacttttccatttcttttatttaatatgtgatctccatctatttcgttcaaaaatcg 35957081  T
Q  353 aa 354  Q
    ||    
T  35957082 aa 35957083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 226 - 279
Target Start/End: Original strand, 42819471 - 42819524
Alignment:
Q  226 tcaaagaaaaattttcttttcttcatctttattcttacaattagttaccatttt 279  Q
    ||||||||||||  |||||||||||| |||||||||| ||||||||||||||||    
T  42819471 tcaaagaaaaatcctcttttcttcatatttattcttaaaattagttaccatttt 42819524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 362
Target Start/End: Original strand, 10775037 - 10775125
Alignment:
Q  274 cattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatactt 362  Q
    ||||||| |||| ||||||||||| |||||| |||  ||||||||||||||||||| | | |  ||||||||| ||||||||| |||||    
T  10775037 cattttcatctccagaacatcaaatttcttcgtctgtttcattcaacatgtgatcttcattttcttcgttccataatcgaatcctactt 10775125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 292 - 380
Target Start/End: Original strand, 12145005 - 12145093
Alignment:
Q  292 atcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattagaggtaaatta 380  Q
    |||||||||||||||||| ||||||||||||||||| | | ||||  ||  || | |||| |||| ||||||||| |||||||||||||    
T  12145005 atcaaacttcttcatctcattcattcaacatgtgattttcatctctgtcactctaaaatcaaatcctacttatcaatagaggtaaatta 12145093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 257 - 355
Target Start/End: Original strand, 24873768 - 24873867
Alignment:
Q  257 ttcttacaattagttaccattttcctctcaagaacatcaaacttctt-catctccttcattcaacatgtgatctccttctcattcgttccagaatcgaat 355  Q
    |||||||||| | ||||||||||| | | ||||| ||||||||| || ||||||| | |||||||||||||||||  ||| |||| ||| ||||||||||    
T  24873768 ttcttacaatcaattaccattttcattttaagaagatcaaacttttttcatctccataattcaacatgtgatctctgtcttattcattctagaatcgaat 24873867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 431 - 505
Target Start/End: Complemental strand, 5500885 - 5500812
Alignment:
Q  431 tataatcatttaccattttcatctcaagaacaacaaacatcttcatatccttcattcaacatgtgatctccatct 505  Q
    |||||||| |||||||||| ||||||| |||| ||||  ||||||| || || ||||||||||||||||||||||    
T  5500885 tataatcagttaccatttttatctcaaaaacatcaaatttcttcatttcatt-attcaacatgtgatctccatct 5500812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 445 - 499
Target Start/End: Complemental strand, 38839715 - 38839661
Alignment:
Q  445 attttcatctcaagaacaacaaacatcttcatatccttcattcaacatgtgatct 499  Q
    |||||||||||||||||| ||||| ||||||| | |||||||| |||||||||||    
T  38839715 attttcatctcaagaacatcaaacctcttcatcttcttcattcgacatgtgatct 38839661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 257 - 335
Target Start/End: Original strand, 42819624 - 42819702
Alignment:
Q  257 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttct 335  Q
    |||||||||| | ||| ||||||| |||||||||||| |||||| ||||||   ||| |||||||| ||||||||||||    
T  42819624 ttcttacaatcaattatcattttcatctcaagaacataaaacttattcatcattttctttcaacatatgatctccttct 42819702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 448 - 505
Target Start/End: Original strand, 3367806 - 3367863
Alignment:
Q  448 ttcatctcaagaacaacaaacatcttcatatccttcattcaacatgtgatctccatct 505  Q
    ||||||||||||||| ||||  | ||||| || |||||||||||||||||||||||||    
T  3367806 ttcatctcaagaacatcaaattttttcatctcattcattcaacatgtgatctccatct 3367863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 423 - 492
Target Start/End: Original strand, 10775162 - 10775231
Alignment:
Q  423 tttttccttataatcatttaccattttcatctcaagaacaacaaacatcttcatatccttcattcaacat 492  Q
    ||||| |||| ||||| ||||||||||||||| ||||||| ||||| ||||||| || ||| ||||||||    
T  10775162 ttttttcttagaatcaattaccattttcatcttaagaacatcaaacttcttcatctctttcgttcaacat 10775231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 440 - 505
Target Start/End: Original strand, 49897886 - 49897951
Alignment:
Q  440 ttaccattttcatctcaagaacaacaaacatcttcatatccttcattcaacatgtgatctccatct 505  Q
    |||||||||| | |||||||||  | ||| ||||| | ||||||||||||||||||||||||||||    
T  49897886 ttaccatttttagctcaagaacgtcgaacttcttcttctccttcattcaacatgtgatctccatct 49897951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 423 - 505
Target Start/End: Original strand, 44330462 - 44330544
Alignment:
Q  423 tttttccttataatcatttaccattttcatctcaagaacaacaaacatcttcatatccttcattcaacatgtgatctccatct 505  Q
    ||||| |||| || |||||||||||||||| |||| |||| || || ||||||| ||| | |||| |||||||||||| ||||    
T  44330462 ttttttcttacaaccatttaccattttcatatcaaaaacatcacacttcttcatttccattattctacatgtgatctctatct 44330544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 226 - 316
Target Start/End: Original strand, 46080821 - 46080910
Alignment:
Q  226 tcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcatt 316  Q
    |||||||||||| |  |||||||||| |||||||| | |||   ||||||||||  ||| |||||||||||| ||||||||||| ||||||    
T  46080821 tcaaagaaaaatctcattttcttcatttttattctcagaatcgattaccatttttatcttaagaacatcaaa-ttcttcatctctttcatt 46080910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 336
Target Start/End: Original strand, 7749024 - 7749085
Alignment:
Q  275 attttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctc 336  Q
    |||||| |||||||||||||||| |||||||| | |||  || |||||||||||||| ||||    
T  7749024 attttcatctcaagaacatcaaatttcttcattttctttgtttaacatgtgatctccatctc 7749085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 242 - 290
Target Start/End: Original strand, 3367746 - 3367794
Alignment:
Q  242 ttttcttcatctttattcttacaattagttaccattttcctctcaagaa 290  Q
    |||||||||||||||||||||| || ||||| | ||||| |||||||||    
T  3367746 ttttcttcatctttattcttacgatcagttatcgttttcatctcaagaa 3367794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 299 - 355
Target Start/End: Original strand, 7104215 - 7104271
Alignment:
Q  299 ttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaat 355  Q
    ||||||||||||||||| |||||||| || | | |||| |||||| |||||||||||    
T  7104215 ttcttcatctccttcatgcaacatgtaatattcatctctttcgtttcagaatcgaat 7104271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 445 - 505
Target Start/End: Original strand, 7749024 - 7749084
Alignment:
Q  445 attttcatctcaagaacaacaaacatcttcatatccttcattcaacatgtgatctccatct 505  Q
    |||||||||||||||||| ||||  ||||||| | |||  || ||||||||||||||||||    
T  7749024 attttcatctcaagaacatcaaatttcttcattttctttgtttaacatgtgatctccatct 7749084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 2e-32; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 270 - 404
Target Start/End: Original strand, 32047190 - 32047325
Alignment:
Q  270 ttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcatta 369  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||| | | |||  ||| ||||| ||| ||||| ||||||||||||    
T  32047190 ttaccattttcatctcaagaacatcaaacttcttcatctcattcattcaacatatgatattcgtcttcttcattccataattgaatcctacttatcatta 32047289  T
Q  370 gaggtaaattaacc-caattcatcaaggggtaatgt 404  Q
    ||||||||||| || |||||||||||||| ||||||    
T  32047290 gaggtaaattatcctcaattcatcaagggataatgt 32047325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 257 - 407
Target Start/End: Original strand, 32342603 - 32342753
Alignment:
Q  257 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatc 356  Q
    |||||||||| | ||| ||||||| |||||| |||||||||||| |||||||| ||||||||||||| ||||||  | |  |||||||||||||| ||||    
T  32342603 ttcttacaatcaattatcattttcatctcaaaaacatcaaactttttcatctcattcattcaacatgcgatctctatttttttcgttccagaatcaaatc 32342702  T
Q  357 atacttatcattagaggtaaattaacccaattcatcaaggggtaatgtagg 407  Q
    ||| |||||||||  | ||||||| |||||||||| || ||| ||||||||    
T  32342703 atatttatcattaaggataaattaccccaattcataaaagggcaatgtagg 32342753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 242 - 499
Target Start/End: Original strand, 20067904 - 20068160
Alignment:
Q  242 ttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcg 341  Q
    |||||||||| |||||||||| ||| ||||| ||||||| |||||| ||||| | |||||||| ||  |||| ||||||||||||||| |  ||||||||    
T  20067904 ttttcttcatttttattcttagaatcagttatcattttcatctcaataacattatacttcttcttcatcttccttcaacatgtgatcttcccctcattcg 20068003  T
Q  342 ttccagaatcgaatcatacttatcattagaggtaaattaac-ccaattcatcaaggggtaatgtaggccccacggatagagttttttccttataatcatt 440  Q
    ||||| ||||||||| ||||| || |||  ||||||||| |  ||||||||||| ||  |||||| ||| ||   |||| | ||||| |||| |||||      
T  20068004 ttccataatcgaatcctacttgtctttaagggtaaattaccttcaattcatcaaaggaaaatgtaagcctcatccatagtgcttttt-cttacaatca-g 20068101  T
Q  441 taccattttcatctcaagaacaacaaacatcttcatatccttcattcaacatgtgatct 499  Q
    |||||||||||| |  |||||| ||||| || |||| || |||||||||||||| ||||    
T  20068102 taccattttcatgtagagaacatcaaacttcctcatctctttcattcaacatgtcatct 20068160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 303 - 407
Target Start/End: Original strand, 32047039 - 32047144
Alignment:
Q  303 tcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattagaggtaaattaac-ccaattcatcaaggggtaa 401  Q
    |||||| |||||||||||||||||||||||| |  ||||||||||||| ||||| || || ||| |||| |||||||| |  |||||||||||| |||||    
T  32047039 tcatcttcttcattcaacatgtgatctcctttttcttcgttccagaattgaatcctatttgtcaatagaagtaaattaccatcaattcatcaagaggtaa 32047138  T
Q  402 tgtagg 407  Q
    ||||||    
T  32047139 tgtagg 32047144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 348 - 500
Target Start/End: Original strand, 32342523 - 32342676
Alignment:
Q  348 aatcgaatcatacttatcattagaggtaaattaacccaat--tcatcaaggggtaatgtaggccccacggatagagttttttccttataatcatttacca 445  Q
    |||||||||||| || ||||||| | ||||||| ||||||  |||||||||| | ||||||||| |||   |  ||||||||| ||| ||||| ||| ||    
T  32342523 aatcgaatcatatttgtcattagcgataaattaccccaatgttcatcaagggatgatgtaggcctcaccattttagttttttc-ttacaatcaattatca 32342621  T
Q  446 ttttcatctcaagaacaacaaacatcttcatatccttcattcaacatgtgatctc 500  Q
    |||||||||||| |||| ||||| | ||||| || ||||||||||||| ||||||    
T  32342622 ttttcatctcaaaaacatcaaactttttcatctcattcattcaacatgcgatctc 32342676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 436 - 497
Target Start/End: Original strand, 32047186 - 32047247
Alignment:
Q  436 tcatttaccattttcatctcaagaacaacaaacatcttcatatccttcattcaacatgtgat 497  Q
    ||||||||||||||||||||||||||| ||||| ||||||| || |||||||||||| ||||    
T  32047186 tcatttaccattttcatctcaagaacatcaaacttcttcatctcattcattcaacatatgat 32047247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 268 - 327
Target Start/End: Original strand, 23577165 - 23577224
Alignment:
Q  268 agttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgat 327  Q
    ||||||||||||| |||||| ||||||| |||||| ||||||||||||||||||| ||||    
T  23577165 agttaccattttcatctcaaaaacatcatacttctccatctccttcattcaacatctgat 23577224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 274 - 403
Target Start/End: Complemental strand, 7556171 - 7556040
Alignment:
Q  274 cattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgtt-ccagaatcgaatcatacttatcattagag 372  Q
    ||||||| |||||||||||| ||| || ||||| || ||||||||||||||||||| | | || ||||||  || |||||||||||| || | ||||| |    
T  7556171 cattttcatctcaagaacattaaatttattcatatcattcattcaacatgtgatcttcctatctttcgttatcataatcgaatcatagttgttattaggg 7556072  T
Q  373 gtaaattaacc-caattcatcaaggggtaatg 403  Q
     ||||||| || ||||||||||| || |||||    
T  7556071 ataaattaccctcaattcatcaatggataatg 7556040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 243 - 303
Target Start/End: Complemental strand, 20206541 - 20206481
Alignment:
Q  243 tttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttctt 303  Q
    ||||||| | |||||||||||||| | ||| ||||||| |||||| |||||||||||||||    
T  20206541 tttcttcttatttattcttacaatcaattatcattttcatctcaataacatcaaacttctt 20206481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 243 - 303
Target Start/End: Complemental strand, 22100564 - 22100504
Alignment:
Q  243 tttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttctt 303  Q
    ||||||| | |||||||||||||| | ||| ||||||| |||||| |||||||||||||||    
T  22100564 tttcttcttatttattcttacaatcaattatcattttcatctcaataacatcaaacttctt 22100504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 346 - 457
Target Start/End: Complemental strand, 26236799 - 26236689
Alignment:
Q  346 agaatcgaatcatacttatcattagaggtaaatta-acccaattcatcaaggggtaatgtaggccccacggatagagttttttccttataatcatttacc 444  Q
    ||||||||||||||||||| |||||||||||||||  ||||||| ||||  || ||||| | |||  |  |||| |||||||| |||||||| | |||||    
T  26236799 agaatcgaatcatacttattattagaggtaaattacccccaatttatcattggataatgcatgccttattgata-agtttttt-cttataatgagttacc 26236702  T
Q  445 attttcatctcaa 457  Q
    |||||||||||||    
T  26236701 attttcatctcaa 26236689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 444 - 499
Target Start/End: Complemental strand, 7556171 - 7556116
Alignment:
Q  444 cattttcatctcaagaacaacaaacatcttcatatccttcattcaacatgtgatct 499  Q
    |||||||||||||||||||  |||  | |||||||| |||||||||||||||||||    
T  7556171 cattttcatctcaagaacattaaatttattcatatcattcattcaacatgtgatct 7556116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 497
Target Start/End: Original strand, 23577167 - 23577224
Alignment:
Q  440 ttaccattttcatctcaagaacaacaaacatcttcatatccttcattcaacatgtgat 497  Q
    |||||||||||||||||| |||| || || ||| ||| ||||||||||||||| ||||    
T  23577167 ttaccattttcatctcaaaaacatcatacttctccatctccttcattcaacatctgat 23577224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 279
Target Start/End: Original strand, 32046954 - 32047010
Alignment:
Q  223 ctatcaaagaaaaattttcttttcttcatctttattcttacaattagttaccatttt 279  Q
    |||||||||||||||| | ||||||  ||||||||||||||||| | ||| ||||||    
T  32046954 ctatcaaagaaaaattctattttctctatctttattcttacaatcaattatcatttt 32047010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 3e-31; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 287 - 499
Target Start/End: Original strand, 25062352 - 25062565
Alignment:
Q  287 agaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattagaggtaaattaacc-ca 385  Q
    |||||||||||||||||||||| ||||||| |||||||||||| | |||| || |||||| |||| |||| ||||| | ||||| ||||||||| || ||    
T  25062352 agaacatcaaacttcttcatctgcttcattaaacatgtgatcttcatctcctttgttccataatcaaatcctacttgttattaggggtaaattaccctca 25062451  T
Q  386 attcatcaaggggtaatgtaggccccacggatagagttttttccttataatcatttaccattttcatctcaagaacaacaaacatcttcatatccttcat 485  Q
    |||||||||||  ||||||||||  |||  ||   ||||||| |||| ||||| ||||| ||||||||||||||| | ||||| ||||||| | |||| |    
T  25062452 attcatcaaggaataatgtaggcttcaccaatttggtttttttcttacaatcaattaccgttttcatctcaagaatatcaaacttcttcatcttcttcgt 25062551  T
Q  486 tcaacatgtgatct 499  Q
    ||||| ||| ||||    
T  25062552 tcaacttgtaatct 25062565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 257 - 406
Target Start/End: Original strand, 22050855 - 22051005
Alignment:
Q  257 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatc 356  Q
    |||||||||||||||| ||||||  ||| || ||||  ||  ||||||||||||||||||||||||||||||| | |||||||| || ||||||||||||    
T  22050855 ttcttacaattagttatcatttttatcttaaaaacaataagtttcttcatctccttcattcaacatgtgatcttcatctcattcctttcagaatcgaatc 22050954  T
Q  357 atacttatcattagaggtaaatta-acccaattcatcaaggggtaatgtag 406  Q
    ||| |||||||||  |||||||||  |||||||||| |||||||| |||||    
T  22050955 atatttatcattaagggtaaattacccccaattcataaaggggtattgtag 22051005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 257 - 330
Target Start/End: Complemental strand, 15131647 - 15131574
Alignment:
Q  257 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctc 330  Q
    ||||||| || ||||||||||||  |||||||||||||||| |||||||||||||||||||| |||||||||||    
T  15131647 ttcttactatcagttaccatttttatctcaagaacatcaaatttcttcatctccttcattcagcatgtgatctc 15131574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 233 - 359
Target Start/End: Complemental strand, 20512923 - 20512797
Alignment:
Q  233 aaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctcct 332  Q
    |||||||  ||||||||||||||||| ||| ||| | ||  ||||||| ||| |  |||||||||||||||||||| ||||||| ||||||| ||||||     
T  20512923 aaaatttcattttcttcatctttatttttaaaatcaattgtcattttcatcttataaacatcaaacttcttcatcttcttcatttaacatgtaatctcca 20512824  T
Q  333 tctcattcgttccagaatcgaatcata 359  Q
    | || |||||| || ||||||||||||    
T  20512823 tatccttcgtttcataatcgaatcata 20512797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 257 - 380
Target Start/End: Original strand, 25062493 - 25062616
Alignment:
Q  257 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatc 356  Q
    |||||||||| | ||||| ||||| ||||||||| ||||||||||||||||| |||| |||||| ||| ||||  ||||  |||  |||||||| |||||    
T  25062493 ttcttacaatcaattaccgttttcatctcaagaatatcaaacttcttcatcttcttcgttcaacttgtaatctttttcttcttcaatccagaattgaatc 25062592  T
Q  357 atacttatcattagaggtaaatta 380  Q
    |||||| |||| ||  ||||||||    
T  25062593 atacttgtcatgagttgtaaatta 25062616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 435 - 500
Target Start/End: Complemental strand, 15131639 - 15131574
Alignment:
Q  435 atcatttaccattttcatctcaagaacaacaaacatcttcatatccttcattcaacatgtgatctc 500  Q
    |||| |||||||||| |||||||||||| ||||  ||||||| ||||||||||| |||||||||||    
T  15131639 atcagttaccatttttatctcaagaacatcaaatttcttcatctccttcattcagcatgtgatctc 15131574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 282 - 331
Target Start/End: Original strand, 22050725 - 22050774
Alignment:
Q  282 tctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctcc 331  Q
    |||||| |||||||||||||||||| ||||||||| ||||||||||||||    
T  22050725 tctcaacaacatcaaacttcttcatttccttcatttaacatgtgatctcc 22050774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 329
Target Start/End: Complemental strand, 20512740 - 20512668
Alignment:
Q  257 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatct 329  Q
    |||||||||||||||| | ||||| |||||| ||||| ||  |||||||| | ||||||| ||||||||||||    
T  20512740 ttcttacaattagttatctttttcatctcaaaaacattaagtttcttcatattcttcattgaacatgtgatct 20512668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 446 - 502
Target Start/End: Original strand, 22050719 - 22050775
Alignment:
Q  446 ttttcatctcaagaacaacaaacatcttcatatccttcattcaacatgtgatctcca 502  Q
    |||| ||||||| |||| ||||| ||||||| ||||||||| |||||||||||||||    
T  22050719 ttttaatctcaacaacatcaaacttcttcatttccttcatttaacatgtgatctcca 22050775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 435 - 503
Target Start/End: Complemental strand, 54000111 - 54000043
Alignment:
Q  435 atcatttaccattttcatctcaagaacaacaaacatcttcatatccttcattcaacatgtgatctccat 503  Q
    |||| ||||||||||||||||||||||| |||| |  |||||  | || ||||||||||||||||||||    
T  54000111 atcaattaccattttcatctcaagaacatcaaaaaaattcatcacatttattcaacatgtgatctccat 54000043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 323
Target Start/End: Complemental strand, 4115452 - 4115389
Alignment:
Q  260 ttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatg 323  Q
    |||| |||| ||||||||||  ||| |||||||| |||||||| |||||| |||||||||||||    
T  4115452 ttactattaattaccatttttatcttaagaacatgaaacttctccatctcattcattcaacatg 4115389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 327
Target Start/End: Complemental strand, 25234261 - 25234202
Alignment:
Q  268 agttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgat 327  Q
    ||||||||||||| |||||||||||||||| ||||| || ||||||  |||| |||||||    
T  25234261 agttaccattttcatctcaagaacatcaaatttcttaatatccttccgtcaatatgtgat 25234202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 435 - 497
Target Start/End: Complemental strand, 25234264 - 25234202
Alignment:
Q  435 atcatttaccattttcatctcaagaacaacaaacatcttcatatccttcattcaacatgtgat 497  Q
    |||| ||||||||||||||||||||||| ||||  |||| |||||||||  |||| |||||||    
T  25234264 atcagttaccattttcatctcaagaacatcaaatttcttaatatccttccgtcaatatgtgat 25234202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 257 - 331
Target Start/End: Complemental strand, 54000119 - 54000045
Alignment:
Q  257 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctcc 331  Q
    ||||||| || | ||||||||||| ||||||||||||||||    |||||| | || ||||||||||||||||||    
T  54000119 ttcttactatcaattaccattttcatctcaagaacatcaaaaaaattcatcacatttattcaacatgtgatctcc 54000045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 246 - 306
Target Start/End: Complemental strand, 44592031 - 44591971
Alignment:
Q  246 cttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcat 306  Q
    ||||||| ||||| ||||||  |||||| |||||| |||||| ||||| ||||||||||||    
T  44592031 cttcatcattattattacaacaagttactattttcatctcaaaaacattaaacttcttcat 44591971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 1e-30; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 257 - 407
Target Start/End: Original strand, 29969101 - 29969252
Alignment:
Q  257 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatc 356  Q
    |||||||||| ||||||||||||  | ||||||||||||||||||||| || ||||||||||||||||||| | | |||| ||||||||| ||||||||     
T  29969101 ttcttacaatcagttaccattttttt-tcaagaacatcaaacttcttcttccccttcattcaacatgtgatattcatctctttcgttccataatcgaatt 29969199  T
Q  357 atacttatcatt-agaggtaaattaacc-caattcatcaaggggtaatgtagg 407  Q
     ||||| ||||| || ||||||||| || ||||||||||||||||||||||||    
T  29969200 ctacttgtcattaaggggtaaattatccacaattcatcaaggggtaatgtagg 29969252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 226 - 413
Target Start/End: Complemental strand, 7405661 - 7405477
Alignment:
Q  226 tcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtg 325  Q
    |||||||||||||   ||| ||| ||||||||||||| ||||||||   |||||  | ||||| ||||||||| |||||||||||| |||||||||||||    
T  7405661 tcaaagaaaaattccatttactttatctttattcttaaaattagttgttatttttatgtcaagcacatcaaacgtcttcatctcctacattcaacatgtg 7405562  T
Q  326 atctccttctcattcgttccagaatcgaatcatacttatcattagaggtaaatta-acccaattcatcaaggggtaatgtaggccccac 413  Q
    |||| | |||| ||||||||| |||||| |    ||||| ||||| |||||||||  ||||| |||||||||||||||||| |||||||    
T  7405561 atcttcatctcgttcgttccataatcgagt----cttatgattaggggtaaattatccccaactcatcaaggggtaatgtatgccccac 7405477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 226 - 329
Target Start/End: Original strand, 34695801 - 34695904
Alignment:
Q  226 tcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtg 325  Q
    ||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||| | |||| |  |||||| ||||||| |||||||||||||||||||    
T  34695801 tcaaagaaaaattctcttttcttcatctttattcttacaatcagttatcattttcttttcaaaattatcaaatttcttcacctccttcattcaacatgtg 34695900  T
Q  326 atct 329  Q
    ||||    
T  34695901 atct 34695904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 257 - 359
Target Start/End: Complemental strand, 35574712 - 35574610
Alignment:
Q  257 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatc 356  Q
    ||||||||||||||||| |||||| ||| |||||||||||| || |||||||| |||||||||||||| |||||| |||  ||||||||| |||||||||    
T  35574712 ttcttacaattagttacgattttcatcttaagaacatcaaattttttcatctcattcattcaacatgtcatctccatctttttcgttccaaaatcgaatc 35574613  T
Q  357 ata 359  Q
    |||    
T  35574612 ata 35574610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 229 - 359
Target Start/End: Complemental strand, 37010445 - 37010315
Alignment:
Q  229 aagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatc 328  Q
    |||||||| ||  |||| |||||||||||| | | ||||||||||||||||| |||||| |||||||||||| ||||| || |||||| |||||||||||    
T  37010445 aagaaaaaattcatttttttcatctttattttaaaaattagttaccattttcatctcaaaaacatcaaacttattcatttctttcatttaacatgtgatc 37010346  T
Q  329 tccttctcattcgttccagaatcgaatcata 359  Q
    ||  |||| ||| ||||| ||||||||||||    
T  37010345 tctatctccttcattccataatcgaatcata 37010315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 254 - 505
Target Start/End: Complemental strand, 35574884 - 35574634
Alignment:
Q  254 ttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcga 353  Q
    ||||| ||||||  |||||| |||||| |||||||||||| ||  || ||||| || |||||| ||||| |||| |   |||| ||||||||| ||||||    
T  35574884 ttattattacaacgagttactattttcatctcaagaacattaatttttttcatatctttcattgaacatatgattttaatctctttcgttccaaaatcga 35574785  T
Q  354 atcatacttatcattagaggtaaattaacc-caattcatcaaggggtaatgtaggccccacggatagagttttttccttataatcatttaccattttcat 452  Q
    |||||| || ||||||| ||||||||| || ||||||||||| |  ||||| || || ||  ||||| ||||||  |||| ||| | |||| ||||||||    
T  35574784 atcatagttgtcattagcggtaaattaccctcaattcatcaatgaataatggagacctcattgatagggttttt--cttacaattagttacgattttcat 35574687  T
Q  453 ctcaagaacaacaaacatcttcatatccttcattcaacatgtgatctccatct 505  Q
    || ||||||| ||||  | ||||| || |||||||||||||| ||||||||||    
T  35574686 cttaagaacatcaaattttttcatctcattcattcaacatgtcatctccatct 35574634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 305 - 505
Target Start/End: Complemental strand, 32166825 - 32166629
Alignment:
Q  305 atctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattagaggtaaatta-acccaattcatcaaggggtaatg 403  Q
    |||| ||||||| |||||||||| | | |||| ||||||||| ||||||||| ||||| ||||||||||||||||| |||||||||||||| |   ||||    
T  32166825 atcttcttcatttaacatgtgatttacatctctttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacacccaattcatcaaagaaaaatg 32166726  T
Q  404 taggccccacggatagagttttttccttataatcatttaccattttcatctcaagaacaacaaacatcttcatatccttcattcaacatgtgatctccat 503  Q
    || | | ||  |||||    |||| ||||  |||| ||| ||||||||||||||||||| ||||| ||||||| ||||| ||||||||||| |||| |||    
T  32166725 tatg-ctcatcgatag----tttttcttactatcaattatcattttcatctcaagaacatcaaacttcttcatctcctttattcaacatgtaatcttcat 32166631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 202 - 364
Target Start/End: Complemental strand, 7590442 - 7590280
Alignment:
Q  202 atgaattggcgtaatttgcccctatcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttc 301  Q
    ||||||||  ||||||| ||||||| | ||||||| |   |||||||| ||||||||||||||||  ||||||| |||| | |||||||||||||| |||    
T  7590442 atgaattgaggtaatttacccctattatagaaaaactcatttttcttcgtctttattcttacaatcggttaccaatttcatttcaagaacatcaaatttc 7590343  T
Q  302 ttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttat 364  Q
    ||||||| |||||||||  ||||| ||| | |||  |||||| |||||||| ||| |||||||    
T  7590342 ttcatcttcttcattcactatgtggtcttcatcttcttcgtttcagaatcgtatcttacttat 7590280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 240 - 344
Target Start/End: Complemental strand, 6630628 - 6630524
Alignment:
Q  240 tcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcatt 339  Q
    |||||||||| |||||||||||  ||| | ||||||||||| ||| |||| ||| ||| |||||||||||||||||| |||| ||||||||| |||||||    
T  6630628 tcttttcttcgtctttattcttcaaatcaattaccattttcatcttaagatcattaaatttcttcatctccttcatttaacaagtgatctccatctcatt 6630529  T
Q  340 cgttc 344  Q
    |||||    
T  6630528 cgttc 6630524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 257 - 371
Target Start/End: Complemental strand, 32166707 - 32166593
Alignment:
Q  257 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatc 356  Q
    ||||||| || | ||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||| | |||| ||||||  ||||| |||||    
T  32166707 ttcttactatcaattatcattttcatctcaagaacatcaaacttcttcatctcctttattcaacatgtaatcttcatctctttcgttttagaattgaatc 32166608  T
Q  357 atacttatcattaga 371  Q
     |  |||||||||||    
T  32166607 ttttttatcattaga 32166593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 259 - 336
Target Start/End: Original strand, 12736059 - 12736136
Alignment:
Q  259 cttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctc 336  Q
    |||||||||||||||||||| | ||| || ||||||||||||||||||||||||| ||||||||||||| ||| ||||    
T  12736059 cttacaattagttaccatttccatcttaataacatcaaacttcttcatctccttcgttcaacatgtgatgtccatctc 12736136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 299 - 362
Target Start/End: Original strand, 29093581 - 29093644
Alignment:
Q  299 ttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatactt 362  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||| |||| ||||||||||    
T  29093581 ttcttcatctccttcattcaacatgtgatctccatctctttcgttccataatcaaatcatactt 29093644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 282 - 402
Target Start/End: Complemental strand, 6630429 - 6630308
Alignment:
Q  282 tctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattagaggtaaatta- 380  Q
    ||||||||||||||||||| |||||||  ||||||||||||||| | ||| |||| ||| || || |||| |||| ||||| ||||||| |||||||||     
T  6630429 tctcaagaacatcaaactttttcatctttttcattcaacatgtgttatccatctccttcatttcaaaatcaaatcctacttgtcattaggggtaaattac 6630330  T
Q  381 acccaattcatcaaggggtaat 402  Q
     | ||||||||||| |||||||    
T  6630329 tctcaattcatcaaagggtaat 6630308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 213 - 285
Target Start/End: Original strand, 39280912 - 39280984
Alignment:
Q  213 taatttgcccctatcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctc 285  Q
    |||||| ||||||||||||||||||   |||||||||||||||||||||| ||| ||||||||||||| ||||    
T  39280912 taatttacccctatcaaagaaaaatccccttttcttcatctttattcttaaaatcagttaccattttcatctc 39280984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 183 - 404
Target Start/End: Original strand, 12782311 - 12782527
Alignment:
Q  183 ttttctacattacctctagatgaat-tggcgtaatttgcccctatcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcc 281  Q
    ||||||||||||||||| ||||||| ||| ||||||| ||  |||||||||||| |  |||||| |||||||||||||||||||| | |||| ||||||     
T  12782311 ttttctacattacctcttgatgaatgtggagtaatttacca-tatcaaagaaaagtcctctttt-ttcatctttattcttacaatcaattactattttca 12782408  T
Q  282 tctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattagaggtaaattaa 381  Q
     ||||     | ||||||| | ||| || |||||||||  |||| | ||| |||| | |||| |||||||||||  ||||| ||||||||||||| |||     
T  12782409 actca-----aacaaacttatacatttctttcattcaatgtgtgttatccatctcctacgtttcagaatcgaattctacttgtcattagaggtaatttat 12782503  T
Q  382 cc-caattcatcaaggggtaatgt 404  Q
    || ||||||||  |||||||||||    
T  12782504 cctcaattcattgaggggtaatgt 12782527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 282 - 402
Target Start/End: Complemental strand, 6803989 - 6803868
Alignment:
Q  282 tctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattagaggtaaatta- 380  Q
    |||||| ||||||||||||||| ||||  |||||||| |||||| | ||| |||| ||| || || |||| |||| ||||| ||||||| |||||||||     
T  6803989 tctcaaaaacatcaaacttctttatctttttcattcaccatgtgttatccatctccttcatttcaaaatcaaatcctacttgtcattaggggtaaattac 6803890  T
Q  381 acccaattcatcaaggggtaat 402  Q
     ||||||||||||| |||||||    
T  6803889 tcccaattcatcaaagggtaat 6803868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 422 - 505
Target Start/End: Original strand, 12736052 - 12736135
Alignment:
Q  422 ttttttccttataatcatttaccattttcatctcaagaacaacaaacatcttcatatccttcattcaacatgtgatctccatct 505  Q
    ||||||||||| ||| | ||||||||| ||||| || |||| ||||| ||||||| |||||| ||||||||||||| |||||||    
T  12736052 ttttttccttacaattagttaccatttccatcttaataacatcaaacttcttcatctccttcgttcaacatgtgatgtccatct 12736135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 242 - 315
Target Start/End: Complemental strand, 30547409 - 30547336
Alignment:
Q  242 ttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcat 315  Q
    |||||||||| ||||||||| ||| || |||| |||||  |||||| |||| ||||||||||||||||||||||    
T  30547409 ttttcttcatttttattcttccaaatatttactatttttatctcaaaaacaacaaacttcttcatctccttcat 30547336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 440 - 505
Target Start/End: Complemental strand, 37010404 - 37010339
Alignment:
Q  440 ttaccattttcatctcaagaacaacaaacatcttcatatccttcattcaacatgtgatctccatct 505  Q
    |||||||||||||||||| |||| ||||| | ||||| || |||||| ||||||||||||| ||||    
T  37010404 ttaccattttcatctcaaaaacatcaaacttattcatttctttcatttaacatgtgatctctatct 37010339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 417 - 497
Target Start/End: Original strand, 29969091 - 29969170
Alignment:
Q  417 tagagttttttccttataatcatttaccattttcatctcaagaacaacaaacatcttcatatccttcattcaacatgtgat 497  Q
    ||||||||||| |||| ||||| ||||||||||  | ||||||||| ||||| ||||| |  |||||||||||||||||||    
T  29969091 tagagtttttttcttacaatcagttaccattttttt-tcaagaacatcaaacttcttcttccccttcattcaacatgtgat 29969170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 327
Target Start/End: Original strand, 31475009 - 31475111
Alignment:
Q  223 ctatcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacat 322  Q
    |||||||||||||||  | |||||||| |||| ||| ||  ||| |||||| |||||  ||||||||||||||||||||||||||| ||| |||||  ||    
T  31475009 ctatcaaagaaaaatcatattttcttcctctt-atttttg-aatcagttactatttttatctcaagaacatcaaacttcttcatcttcttgattcacaat 31475106  T
Q  323 gtgat 327  Q
    |||||    
T  31475107 gtgat 31475111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 434 - 505
Target Start/End: Complemental strand, 6630604 - 6630533
Alignment:
Q  434 aatcatttaccattttcatctcaagaacaacaaacatcttcatatccttcattcaacatgtgatctccatct 505  Q
    ||||| ||||||||||||||| |||| ||  |||  ||||||| ||||||||| |||| |||||||||||||    
T  6630604 aatcaattaccattttcatcttaagatcattaaatttcttcatctccttcatttaacaagtgatctccatct 6630533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 470 - 505
Target Start/End: Original strand, 29093582 - 29093617
Alignment:
Q  470 tcttcatatccttcattcaacatgtgatctccatct 505  Q
    ||||||| ||||||||||||||||||||||||||||    
T  29093582 tcttcatctccttcattcaacatgtgatctccatct 29093617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 270 - 324
Target Start/End: Original strand, 33897753 - 33897807
Alignment:
Q  270 ttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgt 324  Q
    |||| |||||| |||||| ||||||||| ||||| || |||||||||||||||||    
T  33897753 ttactattttcatctcaaaaacatcaaaattcttaatttccttcattcaacatgt 33897807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 503
Target Start/End: Original strand, 33897539 - 33897816
Alignment:
Q  224 tatcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatg 323  Q
    ||||||||||||||  | |||||||||| ||| |||||| |||  |||| ||||||| ||| || ||||| |||     | |||||||||||| ||||||    
T  33897539 tatcaaagaaaaatcatattttcttcatttttcttcttataatcggttatcattttcatcttaaaaacattaaaaaaaattatctccttcatttaacatg 33897638  T
Q  324 tgatctccttctcattcgttccagaatcgaatcatacttatcattagaggtaaattaacc-caattcatcaaggggtaatgtaggccccacggatagagt 422  Q
    |||| | | |||  ||||||| | |||| |||| |  ||||||| ||| ||||||||  | ||||| |||||||   ||||||||| |  || ||| |      
T  33897639 tgatttacatctttttcgttctaaaatctaatcgtgtttatcatcagatgtaaattactctcaattaatcaaggaaaaatgtaggctcgtcg-atata-- 33897735  T
Q  423 tttttccttataatcatttaccattttcatctcaagaacaacaaacatcttcatatccttcattcaacatgtgatctccat 503  Q
    |||||| |||  |||| |||| ||||||||||||| |||| ||||  |||| || ||||||||||||||||| | ||||||    
T  33897736 tttttctttactatcaattactattttcatctcaaaaacatcaaaattcttaatttccttcattcaacatgtaacctccat 33897816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 445 - 505
Target Start/End: Complemental strand, 7405612 - 7405552
Alignment:
Q  445 attttcatctcaagaacaacaaacatcttcatatccttcattcaacatgtgatctccatct 505  Q
    ||||| || ||||| ||| ||||| ||||||| |||| ||||||||||||||||| |||||    
T  7405612 atttttatgtcaagcacatcaaacgtcttcatctcctacattcaacatgtgatcttcatct 7405552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 304 - 380
Target Start/End: Original strand, 26086801 - 26086876
Alignment:
Q  304 catctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattagaggtaaatta 380  Q
    ||||||||| ||||||||| ||||||   |||| ||||||||| ||| ||||| || || |||||||||||||||||    
T  26086801 catctcctttattcaacatatgatctttgtctctttcgttccataattgaatccta-ttgtcattagaggtaaatta 26086876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 6e-29; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 257 - 401
Target Start/End: Original strand, 39341202 - 39341347
Alignment:
Q  257 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatc 356  Q
    ||||||| || ||||||||||||| ||| ||||| ||||||||| |||||||||||||||||||||| ||||||| | |  ||||||| | ||| |||||    
T  39341202 ttcttactatgagttaccattttcatcttaagaatatcaaactttttcatctccttcattcaacatgagatctccatttacttcgttctaaaattgaatc 39341301  T
Q  357 atacttatcattagaggtaaattaaccc-aattcatcaaggggtaa 401  Q
     || |||||||||||||||||||| ||| |||||||||| ||||||    
T  39341302 ttatttatcattagaggtaaattacccctaattcatcaaagggtaa 39341347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 302 - 449
Target Start/End: Original strand, 2562969 - 2563115
Alignment:
Q  302 ttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattagaggtaaattaacccaattcatcaaggggtaa 401  Q
    |||||||| ||||||||||||||||||||  | ||||| ||| |||||||||||||||||||||||| | ||||||||| ||  ||||||||||||||||    
T  2562969 ttcatctctttcattcaacatgtgatctctatatcatttgtttcagaatcgaatcatacttatcatttg-ggtaaattacccatattcatcaaggggtaa 2563067  T
Q  402 tgtaggccccacggatagagttttttccttataatcatttaccatttt 449  Q
    |||||| | ||  ||||||| ||||| |||| || || ||| ||||||    
T  2563068 tgtaggtctcattgatagagattttttcttacaagcagttatcatttt 2563115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 223 - 407
Target Start/End: Original strand, 7938035 - 7938220
Alignment:
Q  223 ctatcaaagaaaaattttcttttcttcatctttattcttacaattagttacca--ttttcctctcaagaacatcaaacttcttcatctccttcattcaac 320  Q
    |||||||||||||||| | |||||||||||||||||||||| ||  ||| | |  ||||| |||||| ||||||||| || || ||||||||||||||||    
T  7938035 ctatcaaagaaaaattatattttcttcatctttattcttacgatccgttgctattttttcatctcaaaaacatcaaa-ttttttatctccttcattcaac 7938133  T
Q  321 atgtgatctccttctcattcgttccagaatcgaatcatacttatcattagaggtaaatta-acccaattcatcaaggggtaatgtagg 407  Q
    ||| ||||||| | |  || | || ||||||||||| || |||||||||  ||||||||| || ||||||||||| ||||||||||||    
T  7938134 atgcgatctccgttttctttgctctagaatcgaatcttatttatcattaagggtaaattacacgcaattcatcaa-gggtaatgtagg 7938220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 257 - 408
Target Start/End: Original strand, 54437809 - 54437961
Alignment:
Q  257 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatc 356  Q
    |||||||||| ||||||||||||  |||||| |||||||||||||||||||| | ||||| |||| ||| | ||| |||  ||| ||  | |||| ||||    
T  54437809 ttcttacaatcagttaccattttaatctcaaaaacatcaaacttcttcatcttcctcatttaacacgtggtttccatctttttcattttaaaatcaaatc 54437908  T
Q  357 atacttatcattagaggtaaattaaccc-aattcatcaaggggtaatgtaggc 408  Q
    ||| |||||||||||||||||||| ||| |||||| |||||||||| ||||||    
T  54437909 atatttatcattagaggtaaattacccctaattcaacaaggggtaacgtaggc 54437961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 228 - 505
Target Start/End: Complemental strand, 34762222 - 34761947
Alignment:
Q  228 aaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgat 327  Q
    ||||||||||| | |||| || |||||||||||||||||| ||||| |||||  | | || ||||||||| || |||||||| ||||||||||| |||||    
T  34762222 aaagaaaaattctatttttttaatctttattcttacaattggttactatttta-tatgaaaaacatcaaatttattcatctcattcattcaacacgtgat 34762124  T
Q  328 ctccttctcattcgttccagaatcgaatcatacttatcattagaggtaaattaacc-caattcatcaaggggtaatgtaggccccacggatagagttttt 426  Q
    |||  |||| ||||||  |||||| || |||||||   ||||| | ||| ||| || |||||||||||| | | |||||| || ||  ||||| ||||||    
T  34762123 ctctatctctttcgttggagaatcaaaccatacttgcaattagggataacttaccctcaattcatcaagagatgatgtagacctcattgatag-gttttt 34762025  T
Q  427 tccttataatcatttaccattttcatctcaagaacaacaaacatcttcatatccttcattcaacatgtgatctccatct 505  Q
    | |||  ||||| ||| |||||||||||| |||| | ||||| | || || ||||||| |||||||||||||| |||||    
T  34762024 t-ctttcaatcaattatcattttcatctcgagaatatcaaacctttttatctccttcactcaacatgtgatcttcatct 34761947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 221 - 505
Target Start/End: Original strand, 54437604 - 54437887
Alignment:
Q  221 ccctatcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaac 320  Q
    ||||||||||| ||||  |  ||||| ||||||||||| ||||||  | ||||||||||| |||||| ||||| |||||||||||| ||||||||| |||    
T  54437604 ccctatcaaaggaaaaactcattttcctcatctttattattacaacaaattaccattttcatctcaataacattaaacttcttcatatccttcatttaac 54437703  T
Q  321 atgtgatctccttctcattcgttccagaatcgaatcatacttatcattagaggtaaattaaccc-aattcatcaaggggtaatgtaggccccacggatag 419  Q
    |||| | || | |||| |||||||||||||  ||||||  || |||| |   |||||||  ||| |||| ||||| |||||||| | ||| ||   ||||    
T  54437704 atgtaaacttcatctctttcgttccagaatttaatcatggttgtcatcatgcgtaaatttccccaaattaatcaatgggtaatgcatgcctcattaatag 54437803  T
Q  420 agttttttccttataatcatttaccattttcatctcaagaacaacaaacatcttcatatccttcattcaacatgtgatctccatct 505  Q
    |  ||||| |||| ||||| |||||||||| ||||||| |||| ||||| ||||||| | | ||||| |||| ||| | |||||||    
T  54437804 a--ttttttcttacaatcagttaccattttaatctcaaaaacatcaaacttcttcatcttcctcatttaacacgtggtttccatct 54437887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 242 - 363
Target Start/End: Complemental strand, 13283927 - 13283806
Alignment:
Q  242 ttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcg 341  Q
    |||||||||||||||||||| |||| | || | |||||| || |||||||||||||||| |||| ||| |||||||||| |||||||||| || | || |    
T  13283927 ttttcttcatctttattctttcaatcaattgctattttcatcacaagaacatcaaacttattcaactcattcattcaacgtgtgatctccatcacttttg 13283828  T
Q  342 ttccagaatcgaatcatactta 363  Q
    ||| ||||||||||| ||||||    
T  13283827 ttctagaatcgaatcctactta 13283806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 272 - 380
Target Start/End: Complemental strand, 20519353 - 20519245
Alignment:
Q  272 accattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattaga 371  Q
    ||||||||| |||||||||| ||||| ||||||||||| |||||| |||||||||||||| |||| || |||||| |||  ||||  ||||||||||| |    
T  20519353 accattttcatctcaagaacgtcaaatttcttcatctctttcattaaacatgtgatctccatctcctttgttccaaaatttaatccaacttatcattata 20519254  T
Q  372 ggtaaatta 380  Q
    | |||||||    
T  20519253 gttaaatta 20519245  T

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Target: chr3; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 212 - 306
Target Start/End: Original strand, 7641806 - 7641900
Alignment:
Q  212 gtaatttgcccctatcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcat 306  Q
    ||||||| |||||||||||||||| |||  ||||||||| ||||||||||| ||| ||||| ||||||  | ||||||||||||||||| |||||    
T  7641806 gtaatttacccctatcaaagaaaattttcattttcttcaactttattcttaaaatcagttatcatttttatatcaagaacatcaaactttttcat 7641900  T

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Target: chr3; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 253 - 369
Target Start/End: Original strand, 48646411 - 48646526
Alignment:
Q  253 tttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcg 352  Q
    |||||||||| ||| | | ||||||||| ||| ||||||||||||||| ||||| | ||||||||||||| || ||||  ||||||||||| || |||||    
T  48646411 tttattcttataatcaatgaccattttcatcttaagaacatcaaactt-ttcatattcttcattcaacatatggtctctatctcattcgtttcataatcg 48646509  T
Q  353 aatcatacttatcatta 369  Q
    |||| | ||||||||||    
T  48646510 aatcctgcttatcatta 48646526  T

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Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 300 - 402
Target Start/End: Complemental strand, 51260654 - 51260553
Alignment:
Q  300 tcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattagaggtaaattaacccaattcatcaaggggt 399  Q
    |||||||||| ||||||||||||||||| ||| | || ||| ||  ||||||||||| |||||||||| | |||||||| | |||||||||||||| |||    
T  51260654 tcttcatctcattcattcaacatgtgatttccatatctttcattttagaatcgaatcctacttatcatga-aggtaaatcaccccaattcatcaagaggt 51260556  T
Q  400 aat 402  Q
    |||    
T  51260555 aat 51260553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 183 - 331
Target Start/End: Original strand, 46303299 - 46303447
Alignment:
Q  183 ttttctacattacctctagatgaattggc-gtaatttgcccctatcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcc 281  Q
    ||||||||||||   || ||||||||||  ||||||| | |||||||||||||||| |  |||| |||||| || |||||||||| |  || ||||||      
T  46303299 ttttctacattattccttgatgaattgggagtaatttactcctatcaaagaaaaatctattttttttcatcatt-ttcttacaatcaaatatcattttta 46303397  T
Q  282 tctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctcc 331  Q
    |||  ||| |||||||||||||||||| ||| ||||||||||||||||||    
T  46303398 tctatagagcatcaaacttcttcatcttctttattcaacatgtgatctcc 46303447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 242 - 322
Target Start/End: Original strand, 21570356 - 21570436
Alignment:
Q  242 ttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacat 322  Q
    ||||||| ||||||||||||||||||  |||| |||||| || |||||||||||||||| |||||||  ||| ||||||||    
T  21570356 ttttctttatctttattcttacaattgattactattttcatcacaagaacatcaaactttttcatctaattcgttcaacat 21570436  T

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Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 259 - 327
Target Start/End: Complemental strand, 42091861 - 42091793
Alignment:
Q  259 cttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgat 327  Q
    |||||||||| ||| ||||||| |||||| |||||||||||| |||||||| |||||| ||||||||||    
T  42091861 cttacaattaattatcattttcatctcaaaaacatcaaactttttcatctctttcatttaacatgtgat 42091793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 242 - 505
Target Start/End: Complemental strand, 20519556 - 20519290
Alignment:
Q  242 ttttcttcatctttattcttacaattagttaccattttcctctcaagaa-----catcaaacttcttcatctccttcattcaacatgtgatctccttctc 336  Q
    |||||||||||||| |||||||||| ||||||||||||  | | || ||     |||||||||| ||||| | ||||||||||| |||||| ||| |||     
T  20519556 ttttcttcatctttcttcttacaatcagttaccattttaatataaaaaaaaaaacatcaaactttttcattttcttcattcaacgtgtgatatccatctt 20519457  T
Q  337 attcgttccagaatcgaatcatacttatcattagaggtaaattaaccc-aattcatcaaggggtaatgtaggccccacggatagagttttttccttataa 435  Q
     ||||||||| ||| |||||||| || |  |||   |||||||| ||| ||||| ||||  | | ||||||||| ||  | |||  ||||||  ||| ||    
T  20519456 tttcgttccaaaattgaatcatatttgt--ttacgagtaaattacccccaattcttcaacag-tgatgtaggcctcattgttaggttttttttattacaa 20519360  T
Q  436 tcatttaccattttcatctcaagaacaacaaacatcttcatatccttcattcaacatgtgatctccatct 505  Q
    ||  | ||||||||||||||||||||  ||||  ||||||| || |||||| ||||||||||||||||||    
T  20519359 tccgtaaccattttcatctcaagaacgtcaaatttcttcatctctttcattaaacatgtgatctccatct 20519290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 242 - 321
Target Start/End: Original strand, 6138487 - 6138566
Alignment:
Q  242 ttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaaca 321  Q
    |||||||||||||||||||| |||| | || | |||||| || |||||||||||| ||| |||| ||| |||||||||||    
T  6138487 ttttcttcatctttattctttcaatcaattgctattttcatcacaagaacatcaaccttattcaactcattcattcaaca 6138566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 440 - 503
Target Start/End: Original strand, 39341215 - 39341278
Alignment:
Q  440 ttaccattttcatctcaagaacaacaaacatcttcatatccttcattcaacatgtgatctccat 503  Q
    ||||||||||||||| ||||| | ||||| | ||||| |||||||||||||||| |||||||||    
T  39341215 ttaccattttcatcttaagaatatcaaactttttcatctccttcattcaacatgagatctccat 39341278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 379
Target Start/End: Complemental strand, 45228378 - 45228277
Alignment:
Q  275 attttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattagaggt 374  Q
    |||||| |||||||||||| |||||| |||||   || ||||||| ||||||| |||  |||||| |||||| |||||||| |||||||||| |||  ||    
T  45228378 attttcatctcaagaacattaaactttttcat---ctgcattcaatatgtgatatccaactcatttgttccaaaatcgaattatacttatcaataggtgt 45228282  T
Q  375 aaatt 379  Q
    |||||    
T  45228281 aaatt 45228277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 429 - 505
Target Start/End: Original strand, 48646417 - 48646492
Alignment:
Q  429 cttataatcatttaccattttcatctcaagaacaacaaacatcttcatatccttcattcaacatgtgatctccatct 505  Q
    |||||||||| | ||||||||||||| ||||||| ||||| | ||||||| ||||||||||||| || |||| ||||    
T  48646417 cttataatcaatgaccattttcatcttaagaacatcaaac-ttttcatattcttcattcaacatatggtctctatct 48646492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 333 - 497
Target Start/End: Complemental strand, 42091955 - 42091793
Alignment:
Q  333 tctcattcgttccagaatcgaatcatacttatcattagaggtaaattaaccc-aattcatcaaggggtaatgtaggccccacggatagagttttttcctt 431  Q
    |||| ||||||||| |||| | || ||||| | ||||| ||||||||| ||| ||||| |||||||||| |||| | | |||  ||   | |||||||||    
T  42091955 tctctttcgttccataatcaagtcttacttgtgattaggggtaaattacccccaattcgtcaaggggtattgtatgtctcaccaat---gctttttcctt 42091859  T
Q  432 ataatcatttaccattttcatctcaagaacaacaaacatcttcatatccttcattcaacatgtgat 497  Q
    | ||| | ||| |||||||||||||| |||| ||||| | ||||| || |||||| ||||||||||    
T  42091858 acaattaattatcattttcatctcaaaaacatcaaactttttcatctctttcatttaacatgtgat 42091793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 257 - 339
Target Start/End: Complemental strand, 34762025 - 34761943
Alignment:
Q  257 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcatt 339  Q
    ||||| |||| | ||| ||||||| |||| |||| ||||||| | || |||||||||| |||||||||||||| | |||||||    
T  34762025 ttctttcaatcaattatcattttcatctcgagaatatcaaacctttttatctccttcactcaacatgtgatcttcatctcatt 34761943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 290 - 394
Target Start/End: Complemental strand, 37012 - 36907
Alignment:
Q  290 acatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattagaggtaaattaac-ccaatt 388  Q
    |||||||| ||||||||||| || |||||||||||||||| | ||||||| ||| || ||||||||| ||||||| ||||   |||||||| | ||||||    
T  37012 acatcaaatttcttcatctcgtttattcaacatgtgatcttcatctcatttgtttcataatcgaatcctacttattattatgtgtaaattacctccaatt 36913  T
Q  389 catcaa 394  Q
    ||||||    
T  36912 catcaa 36907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1743 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold1743
Description:

Target: scaffold1743; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 242 - 324
Target Start/End: Original strand, 772 - 853
Alignment:
Q  242 ttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgt 324  Q
    |||||||||| |||||| ||||| | | ||| ||||||||| ||||| | ||||||||||||||||||||| |||||||||||    
T  772 ttttcttcatttttatttttaca-tcatttatcattttcctttcaagtatatcaaacttcttcatctccttgattcaacatgt 853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 183 - 308
Target Start/End: Complemental strand, 5582 - 5456
Alignment:
Q  183 ttttctacattacctctagatgaattggcg-taatttgcccctatcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcc 281  Q
    |||||||||||||||||  | ||||||  | |||||| ||| ||||||| ||||||    |||||||||||||||| |||| ||| || ||| ||||||     
T  5582 ttttctacattacctcttaacgaattgaaggtaatttacccatatcaaataaaaataactttttcttcatctttatccttaaaatcaggtacaattttca 5483  T
Q  282 tctcaagaacatcaaacttcttcatct 308  Q
    |||||| || |||||||||||||||||    
T  5482 tctcaaaaagatcaaacttcttcatct 5456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 505
Target Start/End: Complemental strand, 5334 - 5293
Alignment:
Q  464 caaacatcttcatatccttcattcaacatgtgatctccatct 505  Q
    |||||||||| || ||||||||||||||||||||||| ||||    
T  5334 caaacatctttatctccttcattcaacatgtgatctctatct 5293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 330
Target Start/End: Complemental strand, 5335 - 5298
Alignment:
Q  293 tcaaacttcttcatctccttcattcaacatgtgatctc 330  Q
    |||||| |||| ||||||||||||||||||||||||||    
T  5335 tcaaacatctttatctccttcattcaacatgtgatctc 5298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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